RNA–Protein interactions for RNA: ENST00000567160.1

CLN3-226, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 616 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-226ENST00000567160 BTF3L4Q96K17 158 aa7.87□□□□□ -1.15
CLN3-226ENST00000567160 CRYGDP07320 174 aa7.86□□□□□ -1.15
CLN3-226ENST00000567160 SMIM17P0DL12 118 aa7.86□□□□□ -1.15
CLN3-226ENST00000567160 TMEM88Q6PEY1 159 aa7.86□□□□□ -1.15
CLN3-226ENST00000567160 SMIM15Q7Z3B0 74 aa7.86□□□□□ -1.15
CLN3-226ENST00000567160 CBLN2Q8IUK8 224 aa7.86□□□□□ -1.15
CLN3-226ENST00000567160 C15orf53Q8NAA6 179 aa7.86□□□□□ -1.15
CLN3-226ENST00000567160 A0A1B0GXF2 115 aa7.85□□□□□ -1.15
CLN3-226ENST00000567160 F5H697 171 aa7.85□□□□□ -1.15
CLN3-226ENST00000567160 RHODO00212 210 aa7.85□□□□□ -1.15
CLN3-226ENST00000567160 SCO1O75880 301 aa7.85□□□□□ -1.15
CLN3-226ENST00000567160 HBBP68871 147 aa7.85□□□□□ -1.15
CLN3-226ENST00000567160 FHL2Q14192 279 aa7.85□□□□□ -1.15
CLN3-226ENST00000567160 ZNF56Q15929 161 aa7.85□□□□□ -1.15
CLN3-226ENST00000567160 UFSP1Q6NVU6 142 aa7.85□□□□□ -1.15
CLN3-226ENST00000567160 ATP5L2Q7Z4Y8 100 aa7.85□□□□□ -1.15
CLN3-226ENST00000567160 DPH3P1Q9H4G8 78 aa7.85□□□□□ -1.15
CLN3-226ENST00000567160 KIF25-AS1Q9Y6Z4 181 aa7.85□□□□□ -1.15
CLN3-226ENST00000567160 TRAV9-1A0A075B6T8 112 aa7.84□□□□□ -1.15
CLN3-226ENST00000567160 TGIF2-C20orf24A0A0A6YYL0 155 aa7.84□□□□□ -1.15
CLN3-226ENST00000567160 A0A0J9YY99 117 aa7.84□□□□□ -1.15
CLN3-226ENST00000567160 A0A1B0GW15 77 aa7.84□□□□□ -1.15
CLN3-226ENST00000567160 S100A8P05109 93 aa7.84□□□□□ -1.15
CLN3-226ENST00000567160 RAB4BP61018 213 aa7.84□□□□□ -1.15
CLN3-226ENST00000567160 ZFP2Q6ZN57 461 aa7.84□□□□□ -1.15
CLN3-226ENST00000567160 Q6ZSN1 163 aa7.84□□□□□ -1.15
CLN3-226ENST00000567160 SMCO4Q9NRQ5 59 aa7.84□□□□□ -1.15
CLN3-226ENST00000567160 TRAV26-1A0A087WT03 109 aa7.83□□□□□ -1.16
CLN3-226ENST00000567160 CIDEAO60543 219 aa7.83□□□□□ -1.16
CLN3-226ENST00000567160 GATA1P15976 413 aaPredicted RBP7.83□□□□□ -1.16
CLN3-226ENST00000567160 LINC00315P59091 139 aa7.83□□□□□ -1.16
CLN3-226ENST00000567160 KRTAP10-2P60368 255 aa7.83□□□□□ -1.16
CLN3-226ENST00000567160 ELOBQ15370 118 aa7.83□□□□□ -1.16
CLN3-226ENST00000567160 AMN1Q8IY45 258 aa7.83□□□□□ -1.16
CLN3-226ENST00000567160 TMEM191AQ9H0A3 160 aa7.83□□□□□ -1.16
CLN3-226ENST00000567160 HHLA3Q9XRX5 114 aa7.83□□□□□ -1.16
CLN3-226ENST00000567160 PAX4O43316 350 aa7.82□□□□□ -1.16
CLN3-226ENST00000567160 BTF3P20290 206 aaKnown RBP7.82□□□□□ -1.16
CLN3-226ENST00000567160 SUMO4Q6EEV6 95 aa7.82□□□□□ -1.16
CLN3-226ENST00000567160 SLC25A29Q8N8R3 303 aa7.82□□□□□ -1.16
CLN3-226ENST00000567160 ZNRF2Q8NHG8 242 aa7.82□□□□□ -1.16
CLN3-226ENST00000567160 PRO0255Q9UI72 69 aa7.82□□□□□ -1.16
CLN3-226ENST00000567160 TRAV26-2A0A0B4J265 109 aa7.81□□□□□ -1.16
CLN3-226ENST00000567160 LOC100131303A0A0U1RQF7 123 aa7.81□□□□□ -1.16
CLN3-226ENST00000567160 K7EQD1 137 aa7.81□□□□□ -1.16
CLN3-226ENST00000567160 CRYBA4P53673 196 aa7.81□□□□□ -1.16
CLN3-226ENST00000567160 RNF185Q96GF1 192 aa7.81□□□□□ -1.16
CLN3-226ENST00000567160 YPEL4Q96NS1 127 aa7.81□□□□□ -1.16
CLN3-226ENST00000567160 TRBV6-4A0A1B0GX49 114 aa7.8□□□□□ -1.16
CLN3-226ENST00000567160 GYPEP15421 78 aa7.8□□□□□ -1.16
CLN3-226ENST00000567160 RAB4AP20338 218 aa7.8□□□□□ -1.16
CLN3-226ENST00000567160 CCL18P55774 89 aa7.8□□□□□ -1.16
CLN3-226ENST00000567160 SLAQ13239 276 aa7.8□□□□□ -1.16
CLN3-226ENST00000567160 RHOHQ15669 191 aa7.8□□□□□ -1.16
CLN3-226ENST00000567160 TTC32Q5I0X7 151 aa7.8□□□□□ -1.16
CLN3-226ENST00000567160 FAM104BQ5XKR9 115 aa7.8□□□□□ -1.16
CLN3-226ENST00000567160 TMEM136Q6ZRR5 245 aa7.8□□□□□ -1.16
CLN3-226ENST00000567160 GATD1Q8NB37 220 aa7.8□□□□□ -1.16
CLN3-226ENST00000567160 VSIG2Q96IQ7 327 aa7.8□□□□□ -1.16
CLN3-226ENST00000567160 PRADC1Q9BSG0 188 aa7.8□□□□□ -1.16
CLN3-226ENST00000567160 Q9UF83 564 aa7.8□□□□□ -1.16
CLN3-226ENST00000567160 TRBV24-1A0A075B6N3 115 aa7.79□□□□□ -1.16
CLN3-226ENST00000567160 SMKR1H3BMG3 65 aa7.79□□□□□ -1.16
CLN3-226ENST00000567160 NCR2O95944 276 aa7.79□□□□□ -1.16
CLN3-226ENST00000567160 NUDT3O95989 172 aa7.79□□□□□ -1.16
CLN3-226ENST00000567160 MRPL51Q4U2R6 128 aaKnown RBP7.79□□□□□ -1.16
CLN3-226ENST00000567160 SERTAD4-AS1Q5TG53 156 aa7.79□□□□□ -1.16
CLN3-226ENST00000567160 RASL11AQ6T310 242 aa7.79□□□□□ -1.16
CLN3-226ENST00000567160 VPS13BQ7Z7G8 4022 aa7.78□□□□□ -1.16
CLN3-226ENST00000567160 FAM229AH3BQW9 127 aa7.78□□□□□ -1.16
CLN3-226ENST00000567160 H7C1H1 209 aa7.78□□□□□ -1.16
CLN3-226ENST00000567160 M0QY20 66 aa7.78□□□□□ -1.16
CLN3-226ENST00000567160 GAS8-AS1O95177 125 aa7.78□□□□□ -1.16
CLN3-226ENST00000567160 RPL39LQ96EH5 51 aaKnown RBP7.78□□□□□ -1.16
CLN3-226ENST00000567160 PGPEP1Q9NXJ5 209 aa7.78□□□□□ -1.16
CLN3-226ENST00000567160 ICOSQ9Y6W8 199 aa7.78□□□□□ -1.16
CLN3-226ENST00000567160 A0A096LPF7 62 aa7.77□□□□□ -1.17
CLN3-226ENST00000567160 GAGE12JA6NER3 117 aa7.77□□□□□ -1.17
CLN3-226ENST00000567160 HLA-DQA1P01909 254 aa7.77□□□□□ -1.17
CLN3-226ENST00000567160 APCSP02743 223 aa7.77□□□□□ -1.17
CLN3-226ENST00000567160 CKS2P33552 79 aa7.77□□□□□ -1.17
CLN3-226ENST00000567160 XGP55808 180 aa7.77□□□□□ -1.17
CLN3-226ENST00000567160 GAGE1Q13065 139 aa7.77□□□□□ -1.17
CLN3-226ENST00000567160 GAGE4Q13068 117 aa7.77□□□□□ -1.17
CLN3-226ENST00000567160 GAGE5Q13069 117 aa7.77□□□□□ -1.17
CLN3-226ENST00000567160 KIAA1644Q3SXP7 199 aa7.77□□□□□ -1.17
CLN3-226ENST00000567160 COX19Q49B96 90 aa7.77□□□□□ -1.17
CLN3-226ENST00000567160 GAGE13Q4V321 117 aa7.77□□□□□ -1.17
CLN3-226ENST00000567160 OR10J3Q5JRS4 329 aa7.77□□□□□ -1.17
CLN3-226ENST00000567160 NEXN-AS1Q8NBZ9 246 aa7.77□□□□□ -1.17
CLN3-226ENST00000567160 MRAP2Q96G30 205 aa7.77□□□□□ -1.17
CLN3-226ENST00000567160 GNB1LQ9BYB4 327 aa7.77□□□□□ -1.17
CLN3-226ENST00000567160 MRPL18Q9H0U6 180 aaKnown RBP7.77□□□□□ -1.17
CLN3-226ENST00000567160 FAT1Q14517 4588 aa7.77□□□□□ -1.17
CLN3-226ENST00000567160 D6R8Y8 96 aa7.76□□□□□ -1.17
CLN3-226ENST00000567160 EREGO14944 169 aa7.76□□□□□ -1.17
CLN3-226ENST00000567160 RPS10P46783 165 aaKnown RBP7.76□□□□□ -1.17
CLN3-226ENST00000567160 RPL36AP83881 106 aaKnown RBP7.76□□□□□ -1.17
CLN3-226ENST00000567160 CDPF1Q6NVV7 123 aa7.76□□□□□ -1.17
CLN3-226ENST00000567160 RPL36ALQ969Q0 106 aaKnown RBP7.76□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms