RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 GATD1Q8NB37 220 aa13.32□□□□□ -0.28
CLN3-225ENST00000566824 RPL36ALQ969Q0 106 aaKnown RBP13.32□□□□□ -0.28
CLN3-225ENST00000566824 GAS8-AS1O95177 125 aa13.31□□□□□ -0.28
CLN3-225ENST00000566824 BORCS7Q96B45 105 aa13.31□□□□□ -0.28
CLN3-225ENST00000566824 LELP1Q5T871 98 aa13.3□□□□□ -0.28
CLN3-225ENST00000566824 Q8N3U1 123 aa13.3□□□□□ -0.28
CLN3-225ENST00000566824 EPPK1P58107 5090 aaKnown RBP13.29□□□□□ -0.28
CLN3-225ENST00000566824 RTL8CO15255 209 aa13.29□□□□□ -0.28
CLN3-225ENST00000566824 RASL11AQ6T310 242 aa13.29□□□□□ -0.28
CLN3-225ENST00000566824 RNF185Q96GF1 192 aa13.29□□□□□ -0.28
CLN3-225ENST00000566824 SEC11CQ9BY50 192 aa13.29□□□□□ -0.28
CLN3-225ENST00000566824 FAT2Q9NYQ8 4349 aa13.28□□□□□ -0.28
CLN3-225ENST00000566824 RIGQ13278 110 aa13.28□□□□□ -0.28
CLN3-225ENST00000566824 OR10J3Q5JRS4 329 aa13.28□□□□□ -0.28
CLN3-225ENST00000566824 C10orf91Q5T1B1 145 aa13.28□□□□□ -0.28
CLN3-225ENST00000566824 RPL39LQ96EH5 51 aaKnown RBP13.28□□□□□ -0.28
CLN3-225ENST00000566824 TMEM191AQ9H0A3 160 aa13.28□□□□□ -0.28
CLN3-225ENST00000566824 PPP1R2P9O14990 202 aa13.27□□□□□ -0.29
CLN3-225ENST00000566824 MT-ND4LP03901 98 aa13.27□□□□□ -0.29
CLN3-225ENST00000566824 MRPL54Q6P161 138 aaKnown RBP13.27□□□□□ -0.29
CLN3-225ENST00000566824 SMIM15Q7Z3B0 74 aa13.27□□□□□ -0.29
CLN3-225ENST00000566824 AMN1Q8IY45 258 aa13.27□□□□□ -0.29
CLN3-225ENST00000566824 DNAH10OSP0CZ25 163 aa13.26□□□□□ -0.29
CLN3-225ENST00000566824 CAMPP49913 170 aa13.26□□□□□ -0.29
CLN3-225ENST00000566824 NTM-AS1Q6ZSK4 140 aa13.26□□□□□ -0.29
CLN3-225ENST00000566824 DEFB104AQ8WTQ1 72 aa13.26□□□□□ -0.29
CLN3-225ENST00000566824 TNFRSF18Q9Y5U5 241 aa13.26□□□□□ -0.29
CLN3-225ENST00000566824 TRAV8-6A0A0B4J262 113 aa13.25□□□□□ -0.29
CLN3-225ENST00000566824 A0A1B0GXF2 115 aa13.25□□□□□ -0.29
CLN3-225ENST00000566824 H7C1H1 209 aa13.25□□□□□ -0.29
CLN3-225ENST00000566824 RAB4AP20338 218 aa13.25□□□□□ -0.29
CLN3-225ENST00000566824 ANAPC16Q96DE5 110 aa13.25□□□□□ -0.29
CLN3-225ENST00000566824 DNAJC30Q96LL9 226 aa13.25□□□□□ -0.29
CLN3-225ENST00000566824 NIT2Q9NQR4 276 aa13.25□□□□□ -0.29
CLN3-225ENST00000566824 SMKR1H3BMG3 65 aa13.24□□□□□ -0.29
CLN3-225ENST00000566824 CARHSP1Q9Y2V2 147 aaKnown RBP13.24□□□□□ -0.29
CLN3-225ENST00000566824 IGHV3-30P01768 117 aa13.23□□□□□ -0.29
CLN3-225ENST00000566824 IGHV3-33P01772 117 aa13.23□□□□□ -0.29
CLN3-225ENST00000566824 IGHV3-30-3P0DP02 117 aa13.23□□□□□ -0.29
CLN3-225ENST00000566824 IGHV3-30-5P0DP03 117 aa13.23□□□□□ -0.29
CLN3-225ENST00000566824 C1orf134Q5TEV5 83 aa13.23□□□□□ -0.29
CLN3-225ENST00000566824 A0A087WWC5 75 aa13.22□□□□□ -0.29
CLN3-225ENST00000566824 NCR2O95944 276 aa13.22□□□□□ -0.29
CLN3-225ENST00000566824 RPS10P46783 165 aaKnown RBP13.22□□□□□ -0.29
CLN3-225ENST00000566824 TTC32Q5I0X7 151 aa13.22□□□□□ -0.29
CLN3-225ENST00000566824 C6orf223Q8N319 242 aa13.22□□□□□ -0.29
CLN3-225ENST00000566824 TRBV6-8A0A0A6YYG3 113 aa13.21□□□□□ -0.29
CLN3-225ENST00000566824 LINC01556Q5JQF7 62 aa13.21□□□□□ -0.29
CLN3-225ENST00000566824 HBBP68871 147 aa13.2□□□□□ -0.3
CLN3-225ENST00000566824 MRPL51Q4U2R6 128 aaKnown RBP13.2□□□□□ -0.3
CLN3-225ENST00000566824 FAM104BQ5XKR9 115 aa13.2□□□□□ -0.3
CLN3-225ENST00000566824 DAZ4Q86SG3 579 aaKnown RBP13.2□□□□□ -0.3
CLN3-225ENST00000566824 DAZ3Q9NR90 486 aaKnown RBP13.2□□□□□ -0.3
CLN3-225ENST00000566824 NIT1Q86X76 327 aa13.19□□□□□ -0.3
CLN3-225ENST00000566824 PKD1P98161 4303 aa13.19□□□□□ -0.3
CLN3-225ENST00000566824 A0A1B0GW15 77 aa13.18□□□□□ -0.3
CLN3-225ENST00000566824 C7orf77A4D0Y5 90 aa13.18□□□□□ -0.3
CLN3-225ENST00000566824 SLC7A5P1Q8MH63 180 aa13.18□□□□□ -0.3
CLN3-225ENST00000566824 CLRN3Q8NCR9 226 aa13.18□□□□□ -0.3
CLN3-225ENST00000566824 NRACQ8N912 160 aa13.17□□□□□ -0.3
CLN3-225ENST00000566824 FRZBQ92765 325 aa13.17□□□□□ -0.3
CLN3-225ENST00000566824 MRAP2Q96G30 205 aa13.17□□□□□ -0.3
CLN3-225ENST00000566824 CTDSP1Q9GZU7 261 aa13.17□□□□□ -0.3
CLN3-225ENST00000566824 DNAH11Q96DT5 4516 aa13.17□□□□□ -0.3
CLN3-225ENST00000566824 TRBV6-5A0A0K0K1A5 114 aa13.16□□□□□ -0.3
CLN3-225ENST00000566824 Q6ZRN7 208 aaPredicted RBP13.16□□□□□ -0.3
CLN3-225ENST00000566824 ATP5L2Q7Z4Y8 100 aa13.16□□□□□ -0.3
CLN3-225ENST00000566824 HECTD4Q9Y4D8 3996 aa13.15□□□□□ -0.3
CLN3-225ENST00000566824 TRAV9-2A0A087WT02 112 aa13.15□□□□□ -0.3
CLN3-225ENST00000566824 SDHAF1A6NFY7 115 aa13.15□□□□□ -0.3
CLN3-225ENST00000566824 APOC3P02656 99 aa13.15□□□□□ -0.3
CLN3-225ENST00000566824 TNP2Q05952 138 aa13.15□□□□□ -0.3
CLN3-225ENST00000566824 PRSS29PA6NIE9 313 aa13.14□□□□□ -0.31
CLN3-225ENST00000566824 IBA57-AS1B1ANH7 110 aa13.14□□□□□ -0.31
CLN3-225ENST00000566824 IQCJQ1A5X6 159 aa13.14□□□□□ -0.31
CLN3-225ENST00000566824 SREK1IP1Q8N9Q2 155 aaPredicted RBP13.14□□□□□ -0.31
CLN3-225ENST00000566824 IMMP2LQ96T52 175 aa13.14□□□□□ -0.31
CLN3-225ENST00000566824 CHCHD5Q9BSY4 110 aa13.14□□□□□ -0.31
CLN3-225ENST00000566824 GAGE6Q13070 117 aa13.13□□□□□ -0.31
CLN3-225ENST00000566824 MPV17L2Q567V2 206 aa13.13□□□□□ -0.31
CLN3-225ENST00000566824 BTF3L4Q96K17 158 aa13.13□□□□□ -0.31
CLN3-225ENST00000566824 RPS10P5Q9NQ39 176 aa13.13□□□□□ -0.31
CLN3-225ENST00000566824 TRBV25-1A0A075B6N4 114 aa13.13□□□□□ -0.31
CLN3-225ENST00000566824 IGHV1-24A0A0C4DH33 117 aa13.13□□□□□ -0.31
CLN3-225ENST00000566824 A0A1B0GVY2 172 aa13.13□□□□□ -0.31
CLN3-225ENST00000566824 TMEM262E9PQX1 116 aa13.13□□□□□ -0.31
CLN3-225ENST00000566824 S100A8P05109 93 aa13.13□□□□□ -0.31
CLN3-225ENST00000566824 POLR2KP53803 58 aaKnown RBP13.13□□□□□ -0.31
CLN3-225ENST00000566824 TMEM97Q5BJF2 176 aa13.13□□□□□ -0.31
CLN3-225ENST00000566824 LINC00336Q6ZUF6 198 aa13.13□□□□□ -0.31
CLN3-225ENST00000566824 TMEM70Q9BUB7 260 aa13.13□□□□□ -0.31
CLN3-225ENST00000566824 Q9HAA7 133 aa13.13□□□□□ -0.31
CLN3-225ENST00000566824 ST20Q9HBF5 79 aa13.13□□□□□ -0.31
CLN3-225ENST00000566824 URGCP-MRPS24S4R325 110 aa13.13□□□□□ -0.31
CLN3-225ENST00000566824 D6R8Y8 96 aa13.12□□□□□ -0.31
CLN3-225ENST00000566824 K7EP13 123 aa13.12□□□□□ -0.31
CLN3-225ENST00000566824 COTL1Q14019 142 aa13.12□□□□□ -0.31
CLN3-225ENST00000566824 RHEBQ15382 184 aa13.12□□□□□ -0.31
CLN3-225ENST00000566824 ATRAIDQ6UW56 229 aa13.12□□□□□ -0.31
CLN3-225ENST00000566824 C10orf126Q8N4M7 172 aa13.12□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 139.3 ms