RNA–Protein interactions for RNA: ENST00000566040.1

CLN3-220, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 544 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-220ENST00000566040 TMEM241Q24JQ0 296 aa6.61□□□□□ -1.35
CLN3-220ENST00000566040 FAM74A3Q4VXF1 159 aa6.61□□□□□ -1.35
CLN3-220ENST00000566040 TTC32Q5I0X7 151 aa6.61□□□□□ -1.35
CLN3-220ENST00000566040 GATD1Q8NB37 220 aa6.61□□□□□ -1.35
CLN3-220ENST00000566040 TSKUQ8WUA8 353 aa6.61□□□□□ -1.35
CLN3-220ENST00000566040 RNF185Q96GF1 192 aa6.61□□□□□ -1.35
CLN3-220ENST00000566040 PGLYRP4Q96LB8 373 aa6.61□□□□□ -1.35
CLN3-220ENST00000566040 TRAV26-2A0A0B4J265 109 aa6.6□□□□□ -1.35
CLN3-220ENST00000566040 IGHV3-38A0A0C4DH36 116 aa6.6□□□□□ -1.35
CLN3-220ENST00000566040 XKRY2A2RUG3 117 aa6.6□□□□□ -1.35
CLN3-220ENST00000566040 HIGD1CA8MV81 97 aa6.6□□□□□ -1.35
CLN3-220ENST00000566040 A8MWL6 223 aa6.6□□□□□ -1.35
CLN3-220ENST00000566040 PEA15Q15121 130 aa6.6□□□□□ -1.35
CLN3-220ENST00000566040 ADIRFQ15847 76 aa6.6□□□□□ -1.35
CLN3-220ENST00000566040 NUP35Q8NFH5 326 aa6.6□□□□□ -1.35
CLN3-220ENST00000566040 GFRA4Q9GZZ7 299 aa6.6□□□□□ -1.35
CLN3-220ENST00000566040 DPH3P1Q9H4G8 78 aa6.6□□□□□ -1.35
CLN3-220ENST00000566040 SMIM27A0A1W2PRY6 76 aa6.59□□□□□ -1.35
CLN3-220ENST00000566040 FAM231BA6NCW3 169 aa6.59□□□□□ -1.35
CLN3-220ENST00000566040 MGPP08493 103 aa6.59□□□□□ -1.35
CLN3-220ENST00000566040 KRTAP10-2P60368 255 aa6.59□□□□□ -1.35
CLN3-220ENST00000566040 SOHLH1Q5JUK2 328 aa6.59□□□□□ -1.35
CLN3-220ENST00000566040 DAZ4Q86SG3 579 aaKnown RBP6.59□□□□□ -1.35
CLN3-220ENST00000566040 NIT1Q86X76 327 aa6.59□□□□□ -1.35
CLN3-220ENST00000566040 RPL39LQ96EH5 51 aaKnown RBP6.59□□□□□ -1.35
CLN3-220ENST00000566040 DAZ3Q9NR90 486 aaKnown RBP6.59□□□□□ -1.35
CLN3-220ENST00000566040 A0A1B0GXF2 115 aa6.58□□□□□ -1.36
CLN3-220ENST00000566040 IBA57-AS1B1ANH7 110 aa6.58□□□□□ -1.36
CLN3-220ENST00000566040 IGHV3-30P01768 117 aa6.58□□□□□ -1.36
CLN3-220ENST00000566040 IGHV3-33P01772 117 aa6.58□□□□□ -1.36
CLN3-220ENST00000566040 TRGC1P0CF51 173 aa6.58□□□□□ -1.36
CLN3-220ENST00000566040 IGHV3-30-3P0DP02 117 aa6.58□□□□□ -1.36
CLN3-220ENST00000566040 IGHV3-30-5P0DP03 117 aa6.58□□□□□ -1.36
CLN3-220ENST00000566040 BTF3P20290 206 aaKnown RBP6.58□□□□□ -1.36
CLN3-220ENST00000566040 RPL36AP83881 106 aaKnown RBP6.58□□□□□ -1.36
CLN3-220ENST00000566040 TWIST1Q15672 202 aa6.58□□□□□ -1.36
CLN3-220ENST00000566040 OR10J3Q5JRS4 329 aa6.58□□□□□ -1.36
CLN3-220ENST00000566040 MAPKAPK5-AS1Q8N8E1 139 aa6.58□□□□□ -1.36
CLN3-220ENST00000566040 RPL36ALQ969Q0 106 aaKnown RBP6.58□□□□□ -1.36
CLN3-220ENST00000566040 TRBV6-8A0A0A6YYG3 113 aa6.57□□□□□ -1.36
CLN3-220ENST00000566040 LRCOL1A6NCL2 159 aa6.57□□□□□ -1.36
CLN3-220ENST00000566040 FUSP35637 526 aaKnown RBP eCLIP6.57□□□□□ -1.36
CLN3-220ENST00000566040 RPS10P46783 165 aaKnown RBP6.57□□□□□ -1.36
CLN3-220ENST00000566040 WFDC2Q14508 124 aa6.57□□□□□ -1.36
CLN3-220ENST00000566040 RASL11AQ6T310 242 aa6.57□□□□□ -1.36
CLN3-220ENST00000566040 DEFB104AQ8WTQ1 72 aa6.57□□□□□ -1.36
CLN3-220ENST00000566040 A0A1B0GUT8 65 aa6.56□□□□□ -1.36
CLN3-220ENST00000566040 F5H697 171 aa6.56□□□□□ -1.36
CLN3-220ENST00000566040 MPV17L2Q567V2 206 aa6.56□□□□□ -1.36
CLN3-220ENST00000566040 TMEM191AQ9H0A3 160 aa6.56□□□□□ -1.36
CLN3-220ENST00000566040 A0A087WWC5 75 aa6.55□□□□□ -1.36
CLN3-220ENST00000566040 TRAV8-6A0A0B4J262 113 aa6.55□□□□□ -1.36
CLN3-220ENST00000566040 LINC00862A6NCI5 91 aa6.55□□□□□ -1.36
CLN3-220ENST00000566040 K7EP13 123 aa6.55□□□□□ -1.36
CLN3-220ENST00000566040 SMIM17P0DL12 118 aa6.55□□□□□ -1.36
CLN3-220ENST00000566040 RAB4AP20338 218 aa6.55□□□□□ -1.36
CLN3-220ENST00000566040 LAGE3Q14657 143 aa6.55□□□□□ -1.36
CLN3-220ENST00000566040 IQCJQ1A5X6 159 aa6.55□□□□□ -1.36
CLN3-220ENST00000566040 KRTAP26-1Q6PEX3 210 aa6.55□□□□□ -1.36
CLN3-220ENST00000566040 AMN1Q8IY45 258 aa6.55□□□□□ -1.36
CLN3-220ENST00000566040 NRACQ8N912 160 aa6.55□□□□□ -1.36
CLN3-220ENST00000566040 NIT2Q9NQR4 276 aa6.55□□□□□ -1.36
CLN3-220ENST00000566040 VPS13BQ7Z7G8 4022 aa6.54□□□□□ -1.36
CLN3-220ENST00000566040 A0A087WTM6 91 aa6.54□□□□□ -1.36
CLN3-220ENST00000566040 TRBV6-5A0A0K0K1A5 114 aa6.54□□□□□ -1.36
CLN3-220ENST00000566040 SMKR1H3BMG3 65 aa6.54□□□□□ -1.36
CLN3-220ENST00000566040 C10orf91Q5T1B1 145 aa6.54□□□□□ -1.36
CLN3-220ENST00000566040 ATRAIDQ6UW56 229 aa6.54□□□□□ -1.36
CLN3-220ENST00000566040 C15orf54Q8N8G6 183 aa6.54□□□□□ -1.36
CLN3-220ENST00000566040 NAT8BQ9UHF3 227 aa6.54□□□□□ -1.36
CLN3-220ENST00000566040 TMEM218A2RU14 115 aa6.53□□□□□ -1.36
CLN3-220ENST00000566040 NCR2O95944 276 aa6.53□□□□□ -1.36
CLN3-220ENST00000566040 POLR2KP53803 58 aaKnown RBP6.53□□□□□ -1.36
CLN3-220ENST00000566040 RAB14P61106 215 aa6.53□□□□□ -1.36
CLN3-220ENST00000566040 ENHOQ6UWT2 76 aa6.53□□□□□ -1.36
CLN3-220ENST00000566040 C10orf126Q8N4M7 172 aa6.53□□□□□ -1.36
CLN3-220ENST00000566040 Q8N976 141 aa6.53□□□□□ -1.36
CLN3-220ENST00000566040 Q9HAA7 133 aa6.53□□□□□ -1.36
CLN3-220ENST00000566040 H7C1H1 209 aa6.52□□□□□ -1.37
CLN3-220ENST00000566040 TSHBP01222 138 aa6.52□□□□□ -1.37
CLN3-220ENST00000566040 MRPL51Q4U2R6 128 aaKnown RBP6.52□□□□□ -1.37
CLN3-220ENST00000566040 FAM104BQ5XKR9 115 aa6.52□□□□□ -1.37
CLN3-220ENST00000566040 UQCC3Q6UW78 93 aa6.52□□□□□ -1.37
CLN3-220ENST00000566040 SPATA12Q7Z6I5 190 aa6.52□□□□□ -1.37
CLN3-220ENST00000566040 COMMD7Q86VX2 200 aa6.52□□□□□ -1.37
CLN3-220ENST00000566040 C20orf203Q8NBC4 194 aa6.52□□□□□ -1.37
CLN3-220ENST00000566040 FRZBQ92765 325 aa6.52□□□□□ -1.37
CLN3-220ENST00000566040 CHCHD7Q9BUK0 85 aa6.52□□□□□ -1.37
CLN3-220ENST00000566040 KLK12Q9UKR0 248 aa6.52□□□□□ -1.37
CLN3-220ENST00000566040 IGLV4-60A0A075B6I1 120 aa6.51□□□□□ -1.37
CLN3-220ENST00000566040 SDHAF1A6NFY7 115 aa6.51□□□□□ -1.37
CLN3-220ENST00000566040 RBX1P62877 108 aa6.51□□□□□ -1.37
CLN3-220ENST00000566040 PNRC1Q12796 327 aaPredicted RBP6.51□□□□□ -1.37
CLN3-220ENST00000566040 GAGE6Q13070 117 aa6.51□□□□□ -1.37
CLN3-220ENST00000566040 MRPL54Q6P161 138 aaKnown RBP6.51□□□□□ -1.37
CLN3-220ENST00000566040 TMEM70Q9BUB7 260 aa6.51□□□□□ -1.37
CLN3-220ENST00000566040 PRR34Q9NV39 138 aa6.51□□□□□ -1.37
CLN3-220ENST00000566040 TRAV9-2A0A087WT02 112 aa6.5□□□□□ -1.37
CLN3-220ENST00000566040 ESDP10768 282 aa6.5□□□□□ -1.37
CLN3-220ENST00000566040 RIGQ13278 110 aa6.5□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 66.6 ms