RNA–Protein interactions for RNA: ENST00000565778.6

CLN3-219, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-219ENST00000565778 LECT2O14960 151 aa13.75□□□□□ -0.21
CLN3-219ENST00000565778 BCL2P10415 239 aa13.75□□□□□ -0.21
CLN3-219ENST00000565778 BAALCQ8WXS3 180 aa13.75□□□□□ -0.21
CLN3-219ENST00000565778 UBE2WQ96B02 151 aa13.75□□□□□ -0.21
CLN3-219ENST00000565778 AP1S3Q96PC3 154 aa13.75□□□□□ -0.21
CLN3-219ENST00000565778 CHCHD7Q9BUK0 85 aa13.75□□□□□ -0.21
CLN3-219ENST00000565778 BIN3Q9NQY0 253 aa13.75□□□□□ -0.21
CLN3-219ENST00000565778 KIF25-AS1Q9Y6Z4 181 aa13.75□□□□□ -0.21
CLN3-219ENST00000565778 hCG_2014768A0A024R1R8 64 aa13.74□□□□□ -0.21
CLN3-219ENST00000565778 IGKV2D-24A0A075B6R9 120 aa13.74□□□□□ -0.21
CLN3-219ENST00000565778 P01737 135 aa13.74□□□□□ -0.21
CLN3-219ENST00000565778 WFDC2Q14508 124 aa13.74□□□□□ -0.21
CLN3-219ENST00000565778 AKAP14Q86UN6 197 aa13.74□□□□□ -0.21
CLN3-219ENST00000565778 DNAJC30Q96LL9 226 aa13.74□□□□□ -0.21
CLN3-219ENST00000565778 IGLC6P0CF74 106 aa13.73□□□□□ -0.21
CLN3-219ENST00000565778 TAGLN2P37802 199 aaKnown RBP13.73□□□□□ -0.21
CLN3-219ENST00000565778 MGPP08493 103 aa13.72□□□□□ -0.21
CLN3-219ENST00000565778 CACNG7P62955 275 aa13.72□□□□□ -0.21
CLN3-219ENST00000565778 CHCHD5Q9BSY4 110 aa13.72□□□□□ -0.21
CLN3-219ENST00000565778 TRBV20OR9-2A0A075B6H5 130 aa13.71□□□□□ -0.21
CLN3-219ENST00000565778 F2Z2F3 143 aa13.71□□□□□ -0.21
CLN3-219ENST00000565778 SMR3BP02814 79 aaPredicted RBP13.71□□□□□ -0.21
CLN3-219ENST00000565778 C9orf62Q8N4C0 152 aa13.71□□□□□ -0.21
CLN3-219ENST00000565778 FRZBQ92765 325 aa13.71□□□□□ -0.21
CLN3-219ENST00000565778 TMEM70Q9BUB7 260 aa13.71□□□□□ -0.21
CLN3-219ENST00000565778 IGLV2-33A0A075B6J2 118 aaPredicted RBP13.7□□□□□ -0.22
CLN3-219ENST00000565778 HAMPP81172 84 aa13.7□□□□□ -0.22
CLN3-219ENST00000565778 Q0VG73 95 aa13.7□□□□□ -0.22
CLN3-219ENST00000565778 TMEM97Q5BJF2 176 aa13.7□□□□□ -0.22
CLN3-219ENST00000565778 LYZL1Q6UWQ5 148 aa13.7□□□□□ -0.22
CLN3-219ENST00000565778 C15orf54Q8N8G6 183 aa13.69□□□□□ -0.22
CLN3-219ENST00000565778 Q8N976 141 aa13.69□□□□□ -0.22
CLN3-219ENST00000565778 NUDT10Q8NFP7 164 aa13.69□□□□□ -0.22
CLN3-219ENST00000565778 NUDT11Q96G61 164 aa13.69□□□□□ -0.22
CLN3-219ENST00000565778 H7C1H1 209 aa13.68□□□□□ -0.22
CLN3-219ENST00000565778 ANGP03950 147 aaKnown RBP13.68□□□□□ -0.22
CLN3-219ENST00000565778 BLOC1S1P78537 153 aa13.68□□□□□ -0.22
CLN3-219ENST00000565778 ALKAL2Q6UX46 152 aa13.68□□□□□ -0.22
CLN3-219ENST00000565778 NTM-AS1Q6ZSK4 140 aa13.68□□□□□ -0.22
CLN3-219ENST00000565778 M0QY20 66 aa13.67□□□□□ -0.22
CLN3-219ENST00000565778 NTF3P20783 257 aa13.67□□□□□ -0.22
CLN3-219ENST00000565778 PKIAP61925 76 aa13.67□□□□□ -0.22
CLN3-219ENST00000565778 MPV17L2Q567V2 206 aa13.67□□□□□ -0.22
CLN3-219ENST00000565778 Q5VSD8 79 aa13.67□□□□□ -0.22
CLN3-219ENST00000565778 OCC1Q8TAD7 63 aa13.67□□□□□ -0.22
CLN3-219ENST00000565778 FAM30AQ9NZY2 134 aa13.67□□□□□ -0.22
CLN3-219ENST00000565778 CRPP02741 224 aa13.66□□□□□ -0.22
CLN3-219ENST00000565778 TRGC1P0CF51 173 aa13.66□□□□□ -0.22
CLN3-219ENST00000565778 SUMO4Q6EEV6 95 aa13.66□□□□□ -0.22
CLN3-219ENST00000565778 ENHOQ6UWT2 76 aa13.66□□□□□ -0.22
CLN3-219ENST00000565778 C1orf43Q9BWL3 253 aa13.66□□□□□ -0.22
CLN3-219ENST00000565778 TRBV25-1A0A075B6N4 114 aa13.65□□□□□ -0.22
CLN3-219ENST00000565778 FAM229AH3BQW9 127 aa13.65□□□□□ -0.22
CLN3-219ENST00000565778 ATRAIDQ6UW56 229 aa13.65□□□□□ -0.22
CLN3-219ENST00000565778 RNASE7Q9H1E1 156 aaKnown RBP13.65□□□□□ -0.22
CLN3-219ENST00000565778 INAFM2P0DMQ5 153 aa13.64□□□□□ -0.23
CLN3-219ENST00000565778 GAGE6Q13070 117 aa13.64□□□□□ -0.23
CLN3-219ENST00000565778 WDR73Q6P4I2 378 aa13.64□□□□□ -0.23
CLN3-219ENST00000565778 DPH3P1Q9H4G8 78 aa13.64□□□□□ -0.23
CLN3-219ENST00000565778 K7EN84 100 aa13.63□□□□□ -0.23
CLN3-219ENST00000565778 NKX2-5P52952 324 aaPredicted RBP13.63□□□□□ -0.23
CLN3-219ENST00000565778 TWIST1Q15672 202 aa13.63□□□□□ -0.23
CLN3-219ENST00000565778 RASL11AQ6T310 242 aa13.63□□□□□ -0.23
CLN3-219ENST00000565778 RPP21Q9H633 154 aaKnown RBP13.63□□□□□ -0.23
CLN3-219ENST00000565778 IGHV1-24A0A0C4DH33 117 aa13.62□□□□□ -0.23
CLN3-219ENST00000565778 CEBPGP53567 150 aa13.61□□□□□ -0.23
CLN3-219ENST00000565778 RBX1P62877 108 aa13.61□□□□□ -0.23
CLN3-219ENST00000565778 IQCJQ1A5X6 159 aa13.61□□□□□ -0.23
CLN3-219ENST00000565778 LINC01620Q4KN68 170 aa13.61□□□□□ -0.23
CLN3-219ENST00000565778 NIT2Q9NQR4 276 aa13.61□□□□□ -0.23
CLN3-219ENST00000565778 TMEM250H0YL14 139 aa13.6□□□□□ -0.23
CLN3-219ENST00000565778 CTRLP40313 264 aa13.6□□□□□ -0.23
CLN3-219ENST00000565778 MIAQ16674 131 aa13.59□□□□□ -0.23
CLN3-219ENST00000565778 C14orf177Q52M58 125 aa13.59□□□□□ -0.23
CLN3-219ENST00000565778 LINC00269Q8N2A0 174 aa13.59□□□□□ -0.23
CLN3-219ENST00000565778 LYPD6BQ8NI32 183 aa13.59□□□□□ -0.23
CLN3-219ENST00000565778 GATCO43716 136 aaKnown RBP13.58□□□□□ -0.24
CLN3-219ENST00000565778 CLPSL2Q6UWE3 100 aa13.58□□□□□ -0.24
CLN3-219ENST00000565778 DEFB104AQ8WTQ1 72 aa13.58□□□□□ -0.24
CLN3-219ENST00000565778 EIF5A2Q9GZV4 153 aaKnown RBP13.58□□□□□ -0.24
CLN3-219ENST00000565778 HLA-DQA1P01909 254 aa13.57□□□□□ -0.24
CLN3-219ENST00000565778 SMIM15Q7Z3B0 74 aa13.57□□□□□ -0.24
CLN3-219ENST00000565778 TMEM243Q9BU79 118 aa13.57□□□□□ -0.24
CLN3-219ENST00000565778 CNFNQ9BYD5 112 aa13.57□□□□□ -0.24
CLN3-219ENST00000565778 Q6ZSA8 131 aa13.56□□□□□ -0.24
CLN3-219ENST00000565778 GTSF1Q8WW33 167 aa13.56□□□□□ -0.24
CLN3-219ENST00000565778 PRR34Q9NV39 138 aa13.56□□□□□ -0.24
CLN3-219ENST00000565778 A8MWL6 223 aa13.55□□□□□ -0.24
CLN3-219ENST00000565778 USP17L23D6RBM5 183 aa13.54□□□□□ -0.24
CLN3-219ENST00000565778 COTL1Q14019 142 aa13.54□□□□□ -0.24
CLN3-219ENST00000565778 FAM231DQ6ZW35 169 aa13.54□□□□□ -0.24
CLN3-219ENST00000565778 GATD1Q8NB37 220 aa13.54□□□□□ -0.24
CLN3-219ENST00000565778 PGLYRP4Q96LB8 373 aa13.54□□□□□ -0.24
CLN3-219ENST00000565778 FAT1Q14517 4588 aa13.54□□□□□ -0.24
CLN3-219ENST00000565778 TRAV26-2A0A0B4J265 109 aa13.53□□□□□ -0.24
CLN3-219ENST00000565778 UBE2L6O14933 153 aa13.53□□□□□ -0.24
CLN3-219ENST00000565778 REG3AQ06141 175 aa13.53□□□□□ -0.24
CLN3-219ENST00000565778 A0A1B0GUV1 79 aa13.52□□□□□ -0.25
CLN3-219ENST00000565778 AMTP48728 403 aa13.52□□□□□ -0.25
CLN3-219ENST00000565778 FOXA3P55318 350 aaPredicted RBP13.52□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms