RNA–Protein interactions for RNA: ENST00000563692.1

VPS39-207, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 4

Gene VPS39, Length 587 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-207ENST00000563692 TCAPO15273 167 aa6.45□□□□□ -1.38
VPS39-207ENST00000563692 RS1O15537 224 aa6.45□□□□□ -1.38
VPS39-207ENST00000563692 CIDEAO60543 219 aa6.45□□□□□ -1.38
VPS39-207ENST00000563692 GIG44P09565 113 aaPredicted RBP6.45□□□□□ -1.38
VPS39-207ENST00000563692 AZU1P20160 251 aa6.45□□□□□ -1.38
VPS39-207ENST00000563692 DAZ2Q13117 558 aaKnown RBP6.45□□□□□ -1.38
VPS39-207ENST00000563692 PET117Q6UWS5 81 aa6.45□□□□□ -1.38
VPS39-207ENST00000563692 KIR2DL5AQ8N109 375 aa6.45□□□□□ -1.38
VPS39-207ENST00000563692 CSNK1G2-AS1Q8NCQ2 148 aa6.45□□□□□ -1.38
VPS39-207ENST00000563692 KIR2DL5BQ8NHK3 375 aa6.45□□□□□ -1.38
VPS39-207ENST00000563692 SMIM2Q9BVW6 85 aa6.45□□□□□ -1.38
VPS39-207ENST00000563692 IGLV2-18A0A075B6J9 118 aa6.44□□□□□ -1.38
VPS39-207ENST00000563692 TRGV1A0A0A0MS02 117 aa6.44□□□□□ -1.38
VPS39-207ENST00000563692 SYS1-DBNDD2H3BUS1 97 aa6.44□□□□□ -1.38
VPS39-207ENST00000563692 M0QY20 66 aa6.44□□□□□ -1.38
VPS39-207ENST00000563692 NUDT3O95989 172 aa6.44□□□□□ -1.38
VPS39-207ENST00000563692 PRM2P04554 102 aa6.44□□□□□ -1.38
VPS39-207ENST00000563692 CFAP126Q5VTH2 177 aa6.44□□□□□ -1.38
VPS39-207ENST00000563692 ZFP2Q6ZN57 461 aa6.44□□□□□ -1.38
VPS39-207ENST00000563692 ZNF705AQ6ZN79 300 aaPredicted RBP6.44□□□□□ -1.38
VPS39-207ENST00000563692 OR4C5Q8NGB2 326 aa6.44□□□□□ -1.38
VPS39-207ENST00000563692 RNASE8Q8TDE3 154 aaKnown RBP6.44□□□□□ -1.38
VPS39-207ENST00000563692 RPL39LQ96EH5 51 aaKnown RBP6.44□□□□□ -1.38
VPS39-207ENST00000563692 KIR2DL4Q99706 377 aa6.44□□□□□ -1.38
VPS39-207ENST00000563692 SPATA25Q9BR10 227 aa6.44□□□□□ -1.38
VPS39-207ENST00000563692 EDA2RQ9HAV5 297 aa6.44□□□□□ -1.38
VPS39-207ENST00000563692 AGRNO00468 2067 aa6.44□□□□□ -1.38
VPS39-207ENST00000563692 PCP4L1A6NKN8 68 aa6.43□□□□□ -1.38
VPS39-207ENST00000563692 TSTD3H0UI37 97 aa6.43□□□□□ -1.38
VPS39-207ENST00000563692 ATP5LO75964 103 aa6.43□□□□□ -1.38
VPS39-207ENST00000563692 PKIAP61925 76 aa6.43□□□□□ -1.38
VPS39-207ENST00000563692 SPATA12Q7Z6I5 190 aa6.43□□□□□ -1.38
VPS39-207ENST00000563692 IL17DQ8TAD2 202 aa6.43□□□□□ -1.38
VPS39-207ENST00000563692 MUC7Q8TAX7 377 aa6.43□□□□□ -1.38
VPS39-207ENST00000563692 DNAJC30Q96LL9 226 aa6.43□□□□□ -1.38
VPS39-207ENST00000563692 TM2D3Q9BRN9 247 aa6.43□□□□□ -1.38
VPS39-207ENST00000563692 OVOL2Q9BRP0 275 aa6.43□□□□□ -1.38
VPS39-207ENST00000563692 MRPL16Q9NX20 251 aaKnown RBP6.43□□□□□ -1.38
VPS39-207ENST00000563692 TNFRSF18Q9Y5U5 241 aa6.43□□□□□ -1.38
VPS39-207ENST00000563692 IGHV3-73A0A0B4J1V6 119 aa6.42□□□□□ -1.38
VPS39-207ENST00000563692 SDHAF1A6NFY7 115 aa6.42□□□□□ -1.38
VPS39-207ENST00000563692 I3L3M4 83 aa6.42□□□□□ -1.38
VPS39-207ENST00000563692 POLR2KP53803 58 aaKnown RBP6.42□□□□□ -1.38
VPS39-207ENST00000563692 TEX43Q6ZNM6 134 aa6.42□□□□□ -1.38
VPS39-207ENST00000563692 IFI27L1Q96BM0 104 aa6.42□□□□□ -1.38
VPS39-207ENST00000563692 VAMP8Q9BV40 100 aa6.42□□□□□ -1.38
VPS39-207ENST00000563692 NOP10Q9NPE3 64 aaKnown RBP6.42□□□□□ -1.38
VPS39-207ENST00000563692 TENM3Q9P273 2699 aa6.42□□□□□ -1.38
VPS39-207ENST00000563692 A0A096LNJ9 63 aa6.41□□□□□ -1.38
VPS39-207ENST00000563692 TRAV4A0A0B4J268 109 aa6.41□□□□□ -1.38
VPS39-207ENST00000563692 TRBV27A0A0K0K1C4 114 aa6.41□□□□□ -1.38
VPS39-207ENST00000563692 IGHV3-53P01767 116 aa6.41□□□□□ -1.38
VPS39-207ENST00000563692 PRSS1P07477 247 aa6.41□□□□□ -1.38
VPS39-207ENST00000563692 UFSP1Q6NVU6 142 aa6.41□□□□□ -1.38
VPS39-207ENST00000563692 Q8N976 141 aa6.41□□□□□ -1.38
VPS39-207ENST00000563692 STAB2Q8WWQ8 2551 aa6.4□□□□□ -1.38
VPS39-207ENST00000563692 MUC4Q99102 2169 aa6.4□□□□□ -1.38
VPS39-207ENST00000563692 TRGV2A0A075B6R0 118 aa6.4□□□□□ -1.38
VPS39-207ENST00000563692 HSBP1L1C9JCN9 74 aa6.4□□□□□ -1.38
VPS39-207ENST00000563692 H0Y8G0 127 aa6.4□□□□□ -1.38
VPS39-207ENST00000563692 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP6.4□□□□□ -1.38
VPS39-207ENST00000563692 RHOHQ15669 191 aa6.4□□□□□ -1.38
VPS39-207ENST00000563692 CDPF1Q6NVV7 123 aa6.4□□□□□ -1.38
VPS39-207ENST00000563692 Q6ZN92 141 aa6.4□□□□□ -1.38
VPS39-207ENST00000563692 LINC00173Q6ZV60 143 aa6.4□□□□□ -1.38
VPS39-207ENST00000563692 TOMM6Q96B49 74 aa6.4□□□□□ -1.38
VPS39-207ENST00000563692 SCGB3A1Q96QR1 104 aa6.4□□□□□ -1.38
VPS39-207ENST00000563692 CYSLTR1Q9Y271 337 aa6.4□□□□□ -1.38
VPS39-207ENST00000563692 COL7A1Q02388 2944 aa6.4□□□□□ -1.39
VPS39-207ENST00000563692 TRAV9-2A0A087WT02 112 aa6.39□□□□□ -1.39
VPS39-207ENST00000563692 TRBV10-1A0A0K0K1A3 114 aa6.39□□□□□ -1.39
VPS39-207ENST00000563692 LINC01545Q5VT33 79 aa6.39□□□□□ -1.39
VPS39-207ENST00000563692 LGALS9CQ6DKI2 356 aa6.39□□□□□ -1.39
VPS39-207ENST00000563692 Q6ZTI0 123 aa6.39□□□□□ -1.39
VPS39-207ENST00000563692 ZNF664Q8N3J9 261 aa6.39□□□□□ -1.39
VPS39-207ENST00000563692 C18orf15Q96N68 181 aa6.39□□□□□ -1.39
VPS39-207ENST00000563692 GAGE12BA1L429 117 aa6.38□□□□□ -1.39
VPS39-207ENST00000563692 GAGE7O76087 117 aa6.38□□□□□ -1.39
VPS39-207ENST00000563692 GAGE12FP0CL80 117 aa6.38□□□□□ -1.39
VPS39-207ENST00000563692 GAGE12GP0CL81 117 aa6.38□□□□□ -1.39
VPS39-207ENST00000563692 GAGE12IP0CL82 117 aa6.38□□□□□ -1.39
VPS39-207ENST00000563692 EMP1P54849 157 aa6.38□□□□□ -1.39
VPS39-207ENST00000563692 RPL36AP83881 106 aaKnown RBP6.38□□□□□ -1.39
VPS39-207ENST00000563692 CASC10Q5T4H9 136 aa6.38□□□□□ -1.39
VPS39-207ENST00000563692 C2orf66Q6UXQ4 117 aa6.38□□□□□ -1.39
VPS39-207ENST00000563692 ERASQ7Z444 233 aa6.38□□□□□ -1.39
VPS39-207ENST00000563692 RPL36ALQ969Q0 106 aaKnown RBP6.38□□□□□ -1.39
VPS39-207ENST00000563692 TMEM141Q96I45 108 aa6.38□□□□□ -1.39
VPS39-207ENST00000563692 PAM16Q9Y3D7 125 aa6.38□□□□□ -1.39
VPS39-207ENST00000563692 DNAH9Q9NYC9 4486 aa6.38□□□□□ -1.39
VPS39-207ENST00000563692 TRGV4A0A0C4DH28 118 aa6.37□□□□□ -1.39
VPS39-207ENST00000563692 PLAC8L1A1L4L8 177 aa6.37□□□□□ -1.39
VPS39-207ENST00000563692 LYRM9A8MSI8 78 aa6.37□□□□□ -1.39
VPS39-207ENST00000563692 MIFP14174 115 aa6.37□□□□□ -1.39
VPS39-207ENST00000563692 SPATA45Q537H7 98 aa6.37□□□□□ -1.39
VPS39-207ENST00000563692 ZFAND6Q6FIF0 208 aa6.37□□□□□ -1.39
VPS39-207ENST00000563692 Q6ZSN1 163 aa6.37□□□□□ -1.39
VPS39-207ENST00000563692 NEGR1Q7Z3B1 354 aa6.37□□□□□ -1.39
VPS39-207ENST00000563692 OR11H2Q8NH07 326 aa6.37□□□□□ -1.39
VPS39-207ENST00000563692 RNF183Q96D59 192 aa6.37□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 85.6 ms