RNA–Protein interactions for RNA: ENST00000561505.2

CLN3-208, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-208ENST00000561505 CLRN3Q8NCR9 226 aa10.5□□□□□ -0.73
CLN3-208ENST00000561505 OR10AG1Q8NH19 301 aa10.5□□□□□ -0.73
CLN3-208ENST00000561505 RBX1P62877 108 aa10.49□□□□□ -0.73
CLN3-208ENST00000561505 INO80EQ8NBZ0 244 aaPredicted RBP10.49□□□□□ -0.73
CLN3-208ENST00000561505 MED28Q9H204 178 aa10.49□□□□□ -0.73
CLN3-208ENST00000561505 MAP1LC3B2A6NCE7 125 aa10.48□□□□□ -0.73
CLN3-208ENST00000561505 IQCJQ1A5X6 159 aa10.48□□□□□ -0.73
CLN3-208ENST00000561505 CHCHD5Q9BSY4 110 aa10.48□□□□□ -0.73
CLN3-208ENST00000561505 ZNF471Q9BX82 626 aaPredicted RBP10.48□□□□□ -0.73
CLN3-208ENST00000561505 MAP1LC3BQ9GZQ8 125 aa10.48□□□□□ -0.73
CLN3-208ENST00000561505 HLA-DQA1P01909 254 aa10.47□□□□□ -0.73
CLN3-208ENST00000561505 S100A9P06702 114 aaKnown RBP10.47□□□□□ -0.73
CLN3-208ENST00000561505 AKR1C8PQ5T2L2 129 aa10.47□□□□□ -0.73
CLN3-208ENST00000561505 CYTL1Q9NRR1 136 aa10.47□□□□□ -0.73
CLN3-208ENST00000561505 G3V3Q6 166 aa10.46□□□□□ -0.73
CLN3-208ENST00000561505 ZNF56Q15929 161 aa10.46□□□□□ -0.73
CLN3-208ENST00000561505 LINC00269Q8N2A0 174 aa10.46□□□□□ -0.73
CLN3-208ENST00000561505 SREK1IP1Q8N9Q2 155 aaPredicted RBP10.46□□□□□ -0.73
CLN3-208ENST00000561505 RNF185Q96GF1 192 aa10.46□□□□□ -0.73
CLN3-208ENST00000561505 TNXBP22105 4242 aa10.45□□□□□ -0.74
CLN3-208ENST00000561505 A0A0D9SG52 128 aa10.45□□□□□ -0.74
CLN3-208ENST00000561505 TRAV8-4A0A0B4J246 113 aa10.44□□□□□ -0.74
CLN3-208ENST00000561505 A0A1B0GUV1 79 aa10.44□□□□□ -0.74
CLN3-208ENST00000561505 P01737 135 aa10.44□□□□□ -0.74
CLN3-208ENST00000561505 SLPIP03973 132 aa10.44□□□□□ -0.74
CLN3-208ENST00000561505 AKR1C3P42330 323 aa10.44□□□□□ -0.74
CLN3-208ENST00000561505 MBD3L1Q8WWY6 194 aa10.44□□□□□ -0.74
CLN3-208ENST00000561505 TRBV25-1A0A075B6N4 114 aa10.43□□□□□ -0.74
CLN3-208ENST00000561505 CST9LP1Q5W188 147 aa10.43□□□□□ -0.74
CLN3-208ENST00000561505 C20orf203Q8NBC4 194 aa10.43□□□□□ -0.74
CLN3-208ENST00000561505 STOML3Q8TAV4 291 aa10.43□□□□□ -0.74
CLN3-208ENST00000561505 DERL1Q9BUN8 251 aa10.43□□□□□ -0.74
CLN3-208ENST00000561505 LRP2P98164 4655 aa10.43□□□□□ -0.74
CLN3-208ENST00000561505 FXYD6-FXYD2A0A087WZ82 144 aa10.42□□□□□ -0.74
CLN3-208ENST00000561505 M0QY20 66 aa10.42□□□□□ -0.74
CLN3-208ENST00000561505 PAGE4O60829 102 aa10.42□□□□□ -0.74
CLN3-208ENST00000561505 GZMBP10144 247 aa10.42□□□□□ -0.74
CLN3-208ENST00000561505 REG3AQ06141 175 aa10.42□□□□□ -0.74
CLN3-208ENST00000561505 GAGE6Q13070 117 aa10.42□□□□□ -0.74
CLN3-208ENST00000561505 IGHV1-24A0A0C4DH33 117 aa10.41□□□□□ -0.74
CLN3-208ENST00000561505 SPANXN1Q5VSR9 72 aa10.41□□□□□ -0.74
CLN3-208ENST00000561505 BAGE2Q86Y30 109 aa10.41□□□□□ -0.74
CLN3-208ENST00000561505 SPACA4Q8TDM5 124 aa10.41□□□□□ -0.74
CLN3-208ENST00000561505 PLAC8Q9NZF1 115 aa10.41□□□□□ -0.74
CLN3-208ENST00000561505 A0A087WYN8 130 aa10.4□□□□□ -0.74
CLN3-208ENST00000561505 F5H697 171 aa10.4□□□□□ -0.74
CLN3-208ENST00000561505 CLPSL2Q6UWE3 100 aa10.4□□□□□ -0.74
CLN3-208ENST00000561505 IGHV3-64A0A075B6Q5 118 aa10.39□□□□□ -0.75
CLN3-208ENST00000561505 IGLC6P0CF74 106 aa10.39□□□□□ -0.75
CLN3-208ENST00000561505 AP1S3Q96PC3 154 aa10.39□□□□□ -0.75
CLN3-208ENST00000561505 IGLV4-60A0A075B6I1 120 aa10.38□□□□□ -0.75
CLN3-208ENST00000561505 MUC21A0A0G2JKD1 596 aa10.38□□□□□ -0.75
CLN3-208ENST00000561505 MUC21A0A140T8X8 626 aa10.38□□□□□ -0.75
CLN3-208ENST00000561505 SCO2A0A1W2PP80 73 aa10.38□□□□□ -0.75
CLN3-208ENST00000561505 PGLYRP4Q96LB8 373 aa10.38□□□□□ -0.75
CLN3-208ENST00000561505 GFRA4Q9GZZ7 299 aa10.38□□□□□ -0.75
CLN3-208ENST00000561505 RNF213Q63HN8 5207 aa10.37□□□□□ -0.75
CLN3-208ENST00000561505 IGLV10-54A0A075B6I4 117 aa10.37□□□□□ -0.75
CLN3-208ENST00000561505 TRAV16A0A0A6YYK6 109 aaPredicted RBP10.37□□□□□ -0.75
CLN3-208ENST00000561505 hDV102S1A0JD36 115 aa10.37□□□□□ -0.75
CLN3-208ENST00000561505 TMUB2Q71RG4 321 aa10.37□□□□□ -0.75
CLN3-208ENST00000561505 UMAD1C9J7I0 102 aa10.36□□□□□ -0.75
CLN3-208ENST00000561505 H7C1H1 209 aa10.36□□□□□ -0.75
CLN3-208ENST00000561505 SMIM17P0DL12 118 aa10.36□□□□□ -0.75
CLN3-208ENST00000561505 SFT2D1Q8WV19 159 aa10.36□□□□□ -0.75
CLN3-208ENST00000561505 LINC01600Q96MT4 127 aa10.36□□□□□ -0.75
CLN3-208ENST00000561505 CHTF8P0CG12 524 aa10.35□□□□□ -0.75
CLN3-208ENST00000561505 SUMO4Q6EEV6 95 aa10.35□□□□□ -0.75
CLN3-208ENST00000561505 TMEM243Q9BU79 118 aa10.35□□□□□ -0.75
CLN3-208ENST00000561505 AP5S1Q9NUS5 200 aa10.35□□□□□ -0.75
CLN3-208ENST00000561505 C19orf71A6NCJ1 209 aa10.34□□□□□ -0.75
CLN3-208ENST00000561505 ARPC5O15511 151 aa10.34□□□□□ -0.75
CLN3-208ENST00000561505 C15orf56Q8N910 161 aa10.34□□□□□ -0.75
CLN3-208ENST00000561505 C11orf52Q96A22 123 aa10.34□□□□□ -0.75
CLN3-208ENST00000561505 RPL35P42766 123 aaKnown RBP10.33□□□□□ -0.76
CLN3-208ENST00000561505 ZNF345Q14585 488 aa10.33□□□□□ -0.76
CLN3-208ENST00000561505 RASL11AQ6T310 242 aa10.33□□□□□ -0.76
CLN3-208ENST00000561505 KCNRGQ8N5I3 272 aa10.33□□□□□ -0.76
CLN3-208ENST00000561505 NIT2Q9NQR4 276 aa10.33□□□□□ -0.76
CLN3-208ENST00000561505 PHOX2AO14813 284 aa10.32□□□□□ -0.76
CLN3-208ENST00000561505 PFDN1O60925 122 aa10.32□□□□□ -0.76
CLN3-208ENST00000561505 RPS20P60866 119 aaKnown RBP10.32□□□□□ -0.76
CLN3-208ENST00000561505 CACNG7P62955 275 aa10.32□□□□□ -0.76
CLN3-208ENST00000561505 FER1L6-AS1Q8NA97 138 aa10.32□□□□□ -0.76
CLN3-208ENST00000561505 NKX2-5P52952 324 aaPredicted RBP10.31□□□□□ -0.76
CLN3-208ENST00000561505 SSTP61278 116 aa10.31□□□□□ -0.76
CLN3-208ENST00000561505 FAM213BQ8TBF2 198 aa10.31□□□□□ -0.76
CLN3-208ENST00000561505 SMIM12Q96EX1 92 aa10.31□□□□□ -0.76
CLN3-208ENST00000561505 F2Z2F3 143 aa10.3□□□□□ -0.76
CLN3-208ENST00000561505 RPS10P46783 165 aaKnown RBP10.3□□□□□ -0.76
CLN3-208ENST00000561505 KRTAP10-8P60410 259 aa10.3□□□□□ -0.76
CLN3-208ENST00000561505 WDR73Q6P4I2 378 aa10.3□□□□□ -0.76
CLN3-208ENST00000561505 TRAV1-1A0A0B4J248 108 aa10.29□□□□□ -0.76
CLN3-208ENST00000561505 NDUFS6O75380 124 aaKnown RBP10.29□□□□□ -0.76
CLN3-208ENST00000561505 H2AFB1P0C5Y9 115 aa10.29□□□□□ -0.76
CLN3-208ENST00000561505 COX6A2Q02221 97 aa10.29□□□□□ -0.76
CLN3-208ENST00000561505 CFAP161Q6P656 301 aa10.29□□□□□ -0.76
CLN3-208ENST00000561505 PRSS3P2Q8NHM4 247 aa10.29□□□□□ -0.76
CLN3-208ENST00000561505 C7orf33Q8WU49 177 aa10.29□□□□□ -0.76
CLN3-208ENST00000561505 DPH3Q96FX2 82 aa10.29□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 99.8 ms