RNA–Protein interactions for RNA: ENST00000558925.1

USP3-209, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 501 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-209ENST00000558925 UBE2G1P62253 170 aa0.26□□□□□ -2.37
USP3-209ENST00000558925 SPCS2Q15005 226 aa0.26□□□□□ -2.37
USP3-209ENST00000558925 S100A7L2Q5SY68 101 aa0.26□□□□□ -2.37
USP3-209ENST00000558925 SPATA8Q6RVD6 105 aa0.26□□□□□ -2.37
USP3-209ENST00000558925 C20orf197Q8N268 126 aa0.26□□□□□ -2.37
USP3-209ENST00000558925 VSTM2AQ8TAG5 236 aa0.26□□□□□ -2.37
USP3-209ENST00000558925 C10orf82Q8WW14 230 aa0.26□□□□□ -2.37
USP3-209ENST00000558925 VPS25Q9BRG1 176 aa0.26□□□□□ -2.37
USP3-209ENST00000558925 PSMG3Q9BT73 122 aaPredicted RBP0.26□□□□□ -2.37
USP3-209ENST00000558925 KRTAP2-4Q9BYR9 128 aa0.26□□□□□ -2.37
USP3-209ENST00000558925 KRTAP2-1Q9BYU5 128 aa0.26□□□□□ -2.37
USP3-209ENST00000558925 SAR1AQ9NR31 198 aa0.26□□□□□ -2.37
USP3-209ENST00000558925 BICRAQ9NZM4 1560 aa0.26□□□□□ -2.37
USP3-209ENST00000558925 FOCADQ5VW36 1801 aa0.26□□□□□ -2.37
USP3-209ENST00000558925 ARFGEF1Q9Y6D6 1849 aa0.26□□□□□ -2.37
USP3-209ENST00000558925 PLXNA1Q9UIW2 1896 aa0.26□□□□□ -2.37
USP3-209ENST00000558925 TNCP24821 2201 aa0.26□□□□□ -2.37
USP3-209ENST00000558925 CEP290O15078 2479 aa0.26□□□□□ -2.37
USP3-209ENST00000558925 MTORP42345 2549 aa0.26□□□□□ -2.37
USP3-209ENST00000558925 STAB2Q8WWQ8 2551 aa0.26□□□□□ -2.37
USP3-209ENST00000558925 UTP20O75691 2785 aaKnown RBP0.26□□□□□ -2.37
USP3-209ENST00000558925 ZANQ9Y493 2812 aa0.26□□□□□ -2.37
USP3-209ENST00000558925 MDN1Q9NU22 5596 aa0.25□□□□□ -2.37
USP3-209ENST00000558925 ZFHX4Q86UP3 3567 aa0.25□□□□□ -2.37
USP3-209ENST00000558925 AKAP13Q12802 2813 aa0.25□□□□□ -2.37
USP3-209ENST00000558925 UBR5O95071 2799 aaPredicted RBP0.25□□□□□ -2.37
USP3-209ENST00000558925 ACANP16112 2415 aa0.25□□□□□ -2.37
USP3-209ENST00000558925 DMBT1Q9UGM3 2413 aaPredicted RBP0.25□□□□□ -2.37
USP3-209ENST00000558925 MYH7P12883 1935 aa0.25□□□□□ -2.37
USP3-209ENST00000558925 PHIPQ8WWQ0 1821 aa0.25□□□□□ -2.37
USP3-209ENST00000558925 BLMP54132 1417 aaPredicted RBP0.25□□□□□ -2.37
USP3-209ENST00000558925 IBTKQ9P2D0 1353 aaPredicted RBP0.25□□□□□ -2.37
USP3-209ENST00000558925 A0A087WTM6 91 aa0.25□□□□□ -2.37
USP3-209ENST00000558925 NCR2O95944 276 aa0.25□□□□□ -2.37
USP3-209ENST00000558925 PRH1P02810 166 aa0.25□□□□□ -2.37
USP3-209ENST00000558925 HMGN1P05114 100 aa0.25□□□□□ -2.37
USP3-209ENST00000558925 HIST1H1DP16402 221 aaKnown RBP0.25□□□□□ -2.37
USP3-209ENST00000558925 CCL3L1P16619 93 aa0.25□□□□□ -2.37
USP3-209ENST00000558925 S100A12P80511 92 aa0.25□□□□□ -2.37
USP3-209ENST00000558925 EMX2Q04743 252 aa0.25□□□□□ -2.37
USP3-209ENST00000558925 CCDC58Q4VC31 144 aa0.25□□□□□ -2.37
USP3-209ENST00000558925 CYP2G1PQ6ZSU1 146 aa0.25□□□□□ -2.37
USP3-209ENST00000558925 TCEAL4Q96EI5 215 aa0.25□□□□□ -2.37
USP3-209ENST00000558925 DPH3Q96FX2 82 aa0.25□□□□□ -2.37
USP3-209ENST00000558925 TMEM242Q9NWH2 141 aa0.25□□□□□ -2.37
USP3-209ENST00000558925 BET1LQ9NYM9 111 aa0.25□□□□□ -2.37
USP3-209ENST00000558925 DNAH12Q6ZR08 3092 aa0.25□□□□□ -2.37
USP3-209ENST00000558925 IGF2RP11717 2491 aa0.25□□□□□ -2.37
USP3-209ENST00000558925 CADP27708 2225 aa0.25□□□□□ -2.37
USP3-209ENST00000558925 RYR2Q92736 4967 aa0.25□□□□□ -2.37
USP3-209ENST00000558925 PHLPP1O60346 1717 aa0.24□□□□□ -2.37
USP3-209ENST00000558925 TEX15Q9BXT5 2789 aa0.24□□□□□ -2.37
USP3-209ENST00000558925 KMT2CQ8NEZ4 4911 aaKnown RBP0.24□□□□□ -2.37
USP3-209ENST00000558925 ADGRB1O14514 1584 aa0.24□□□□□ -2.37
USP3-209ENST00000558925 CACNA1HO95180 2353 aa0.24□□□□□ -2.37
USP3-209ENST00000558925 RANBP2P49792 3224 aaKnown RBP0.24□□□□□ -2.37
USP3-209ENST00000558925 LOC100130705A0A1B0GUX0 176 aa0.24□□□□□ -2.37
USP3-209ENST00000558925 A0A1B0GV90 55 aa0.24□□□□□ -2.37
USP3-209ENST00000558925 LINC00587B1AMM8 73 aa0.24□□□□□ -2.37
USP3-209ENST00000558925 CCDC179H3BU77 68 aa0.24□□□□□ -2.37
USP3-209ENST00000558925 K7EP13 123 aa0.24□□□□□ -2.37
USP3-209ENST00000558925 GNG7O60262 68 aa0.24□□□□□ -2.37
USP3-209ENST00000558925 IL5P05113 134 aa0.24□□□□□ -2.37
USP3-209ENST00000558925 FXYD6P3P58550 94 aa0.24□□□□□ -2.37
USP3-209ENST00000558925 SARNPP82979 210 aaKnown RBP0.24□□□□□ -2.37
USP3-209ENST00000558925 C9orf116Q5BN46 136 aaPredicted RBP0.24□□□□□ -2.37
USP3-209ENST00000558925 SPANXN1Q5VSR9 72 aa0.24□□□□□ -2.37
USP3-209ENST00000558925 SLC48A1Q6P1K1 146 aa0.24□□□□□ -2.37
USP3-209ENST00000558925 C4orf33Q8N1A6 199 aa0.24□□□□□ -2.37
USP3-209ENST00000558925 KCNRGQ8N5I3 272 aa0.24□□□□□ -2.37
USP3-209ENST00000558925 SPTSSBQ8NFR3 76 aa0.24□□□□□ -2.37
USP3-209ENST00000558925 Q96NJ1 140 aa0.24□□□□□ -2.37
USP3-209ENST00000558925 DSCR8Q96T75 97 aa0.24□□□□□ -2.37
USP3-209ENST00000558925 SEC11CQ9BY50 192 aa0.24□□□□□ -2.37
USP3-209ENST00000558925 COA4Q9NYJ1 87 aa0.24□□□□□ -2.37
USP3-209ENST00000558925 PIEZO2Q9H5I5 2752 aa0.24□□□□□ -2.37
USP3-209ENST00000558925 MAP2P11137 1827 aaKnown RBP0.24□□□□□ -2.37
USP3-209ENST00000558925 EP400Q96L91 3159 aa0.24□□□□□ -2.37
USP3-209ENST00000558925 ZNF142P52746 1687 aaPredicted RBP0.24□□□□□ -2.37
USP3-209ENST00000558925 CACNA1CQ13936 2221 aa0.23□□□□□ -2.37
USP3-209ENST00000558925 MXRA5Q9NR99 2828 aa0.23□□□□□ -2.37
USP3-209ENST00000558925 C5orf42Q9H799 3197 aa0.23□□□□□ -2.37
USP3-209ENST00000558925 NCOA3Q9Y6Q9 1424 aa0.23□□□□□ -2.37
USP3-209ENST00000558925 BOD1L1Q8NFC6 3051 aa0.23□□□□□ -2.37
USP3-209ENST00000558925 SPTA1P02549 2419 aa0.23□□□□□ -2.37
USP3-209ENST00000558925 RYR1P21817 5038 aa0.23□□□□□ -2.37
USP3-209ENST00000558925 SPTBN2O15020 2390 aa0.23□□□□□ -2.37
USP3-209ENST00000558925 PARP14Q460N5 1801 aa0.23□□□□□ -2.37
USP3-209ENST00000558925 SPEF2Q9C093 1822 aa0.23□□□□□ -2.37
USP3-209ENST00000558925 TRAV12-2A0A075B6T6 113 aa0.23□□□□□ -2.37
USP3-209ENST00000558925 SPAARA0A1B0GVQ0 90 aa0.23□□□□□ -2.37
USP3-209ENST00000558925 CLPSL1A2RUU4 121 aa0.23□□□□□ -2.37
USP3-209ENST00000558925 A6NIN4 97 aa0.23□□□□□ -2.37
USP3-209ENST00000558925 SNCGO76070 127 aa0.23□□□□□ -2.37
USP3-209ENST00000558925 GUCA1AP43080 201 aaPredicted RBP0.23□□□□□ -2.37
USP3-209ENST00000558925 RPL7L1Q6DKI1 246 aaKnown RBP0.23□□□□□ -2.37
USP3-209ENST00000558925 NDUFA11Q86Y39 141 aa0.23□□□□□ -2.37
USP3-209ENST00000558925 COX7B2Q8TF08 81 aa0.23□□□□□ -2.37
USP3-209ENST00000558925 SPTSSAQ969W0 71 aa0.23□□□□□ -2.37
USP3-209ENST00000558925 LINC00470Q9BZP3 86 aa0.23□□□□□ -2.37
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms