RNA–Protein interactions for RNA: ENST00000557439.5

XRCC3-218, Transcript of X-ray repair cross complementing 3, humanhuman

TSL 5

Gene XRCC3, Length 2,599 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
XRCC3-218ENST00000557439 HOXA3O43365 443 aaPredicted RBP13.07□□□□□ -0.32
XRCC3-218ENST00000557439 PGPEP1Q9NXJ5 209 aa13.07□□□□□ -0.32
XRCC3-218ENST00000557439 Q9UF83 564 aa13.07□□□□□ -0.32
XRCC3-218ENST00000557439 USP24Q9UPU5 2620 aa13.07□□□□□ -0.32
XRCC3-218ENST00000557439 TRBV27A0A0K0K1C4 114 aa13.07□□□□□ -0.32
XRCC3-218ENST00000557439 ZNF702PQ9H963 129 aa13.07□□□□□ -0.32
XRCC3-218ENST00000557439 WNK1Q9H4A3 2382 aa13.06□□□□□ -0.32
XRCC3-218ENST00000557439 APOMO95445 188 aa13.06□□□□□ -0.32
XRCC3-218ENST00000557439 TCTEX1D4Q5JR98 221 aa13.06□□□□□ -0.32
XRCC3-218ENST00000557439 LINC01549A6NIU2 74 aa13.06□□□□□ -0.32
XRCC3-218ENST00000557439 GATA3P23771 443 aa13.06□□□□□ -0.32
XRCC3-218ENST00000557439 VPREB3Q9UKI3 123 aa13.06□□□□□ -0.32
XRCC3-218ENST00000557439 ETDBQ3ZM63 59 aa13.05□□□□□ -0.32
XRCC3-218ENST00000557439 EPG5Q9HCE0 2579 aa13.05□□□□□ -0.32
XRCC3-218ENST00000557439 CR1P17927 2039 aa13.05□□□□□ -0.32
XRCC3-218ENST00000557439 RPL32P62910 135 aaKnown RBP13.04□□□□□ -0.32
XRCC3-218ENST00000557439 SYT8Q8NBV8 401 aa13.04□□□□□ -0.32
XRCC3-218ENST00000557439 CHD6Q8TD26 2715 aa13.04□□□□□ -0.32
XRCC3-218ENST00000557439 DEFB131AP59861 70 aa13.04□□□□□ -0.32
XRCC3-218ENST00000557439 MRPL16Q9NX20 251 aaKnown RBP13.04□□□□□ -0.32
XRCC3-218ENST00000557439 NACAE9PAV3 2078 aa13.04□□□□□ -0.32
XRCC3-218ENST00000557439 NF1P21359 2839 aa13.04□□□□□ -0.32
XRCC3-218ENST00000557439 A0A0J9YY99 117 aa13.03□□□□□ -0.32
XRCC3-218ENST00000557439 A0A1B0GWB2 263 aa13.03□□□□□ -0.32
XRCC3-218ENST00000557439 NBPF19A0A087WUL8 3843 aa13.03□□□□□ -0.32
XRCC3-218ENST00000557439 CEMP1Q6PRD7 247 aaPredicted RBP13.03□□□□□ -0.32
XRCC3-218ENST00000557439 TIMM17AQ99595 171 aa13.03□□□□□ -0.32
XRCC3-218ENST00000557439 PRRC2AP48634 2157 aaKnown RBP13.03□□□□□ -0.32
XRCC3-218ENST00000557439 TRBV6-5A0A0K0K1A5 114 aa13.02□□□□□ -0.32
XRCC3-218ENST00000557439 RNASE13Q5GAN3 156 aaKnown RBP13.02□□□□□ -0.32
XRCC3-218ENST00000557439 AKAP9Q99996 3911 aa13.02□□□□□ -0.33
XRCC3-218ENST00000557439 NOTCH3Q9UM47 2321 aa13.02□□□□□ -0.33
XRCC3-218ENST00000557439 RBMY1BA6NDE4 496 aaKnown RBP13.02□□□□□ -0.33
XRCC3-218ENST00000557439 RBMY1EA6NEQ0 496 aaKnown RBP13.02□□□□□ -0.33
XRCC3-218ENST00000557439 RBMY1DP0C7P1 496 aaKnown RBP13.02□□□□□ -0.33
XRCC3-218ENST00000557439 INSL3P51460 131 aa13.02□□□□□ -0.33
XRCC3-218ENST00000557439 KHDC1LQ5JSQ8 128 aa13.02□□□□□ -0.33
XRCC3-218ENST00000557439 SAMD13Q5VXD3 122 aa13.02□□□□□ -0.33
XRCC3-218ENST00000557439 TMEM141Q96I45 108 aa13.02□□□□□ -0.33
XRCC3-218ENST00000557439 ODF3Q96PU9 254 aa13.02□□□□□ -0.33
XRCC3-218ENST00000557439 SPANXB1Q9NS25 103 aaPredicted RBP13.02□□□□□ -0.33
XRCC3-218ENST00000557439 SETD2Q9BYW2 2564 aaPredicted RBP13.02□□□□□ -0.33
XRCC3-218ENST00000557439 LINC01619G3V211 115 aa13.01□□□□□ -0.33
XRCC3-218ENST00000557439 DSCR9P59020 149 aa13.01□□□□□ -0.33
XRCC3-218ENST00000557439 HERVK_113P61574 105 aa13.01□□□□□ -0.33
XRCC3-218ENST00000557439 Q6YL49 198 aa13.01□□□□□ -0.33
XRCC3-218ENST00000557439 BBC3Q96PG8 261 aaPredicted RBP13.01□□□□□ -0.33
XRCC3-218ENST00000557439 LOC107984156A0A0G2JMH3 177 aa13□□□□□ -0.33
XRCC3-218ENST00000557439 IGHV4-31P0DP07 118 aa13□□□□□ -0.33
XRCC3-218ENST00000557439 ARL17AQ8IVW1 177 aa13□□□□□ -0.33
XRCC3-218ENST00000557439 A0A0J9YXV3 536 aa13□□□□□ -0.33
XRCC3-218ENST00000557439 TSPAN13O95857 204 aa13□□□□□ -0.33
XRCC3-218ENST00000557439 TRPT1Q86TN4 253 aaKnown RBP13□□□□□ -0.33
XRCC3-218ENST00000557439 UBE2E2Q96LR5 201 aa13□□□□□ -0.33
XRCC3-218ENST00000557439 GAGE13Q4V321 117 aa12.99□□□□□ -0.33
XRCC3-218ENST00000557439 AMELXQ99217 191 aa12.99□□□□□ -0.33
XRCC3-218ENST00000557439 PRO0461Q9UI25 63 aa12.99□□□□□ -0.33
XRCC3-218ENST00000557439 J3QQQ9 107 aa12.99□□□□□ -0.33
XRCC3-218ENST00000557439 ELANEP08246 267 aa12.99□□□□□ -0.33
XRCC3-218ENST00000557439 UBE2D1P51668 147 aa12.99□□□□□ -0.33
XRCC3-218ENST00000557439 TMEM61Q8N0U2 210 aa12.98□□□□□ -0.33
XRCC3-218ENST00000557439 C20orf203Q8NBC4 194 aa12.98□□□□□ -0.33
XRCC3-218ENST00000557439 F8W1H4 67 aa12.98□□□□□ -0.33
XRCC3-218ENST00000557439 Q6ZSN1 163 aa12.98□□□□□ -0.33
XRCC3-218ENST00000557439 NIPBLQ6KC79 2804 aaeCLIP12.98□□□□□ -0.33
XRCC3-218ENST00000557439 TMEM89A2RUT3 159 aa12.97□□□□□ -0.33
XRCC3-218ENST00000557439 ADARB2-AS1A8MUL3 147 aa12.97□□□□□ -0.33
XRCC3-218ENST00000557439 NSUN5P1Q3KNT7 163 aa12.97□□□□□ -0.33
XRCC3-218ENST00000557439 PAPPA-AS1Q5QFB9 102 aa12.97□□□□□ -0.33
XRCC3-218ENST00000557439 SPAG8Q99932 426 aaPredicted RBP12.97□□□□□ -0.33
XRCC3-218ENST00000557439 CCDC168Q8NDH2 2452 aa12.97□□□□□ -0.33
XRCC3-218ENST00000557439 I3L3M4 83 aa12.97□□□□□ -0.33
XRCC3-218ENST00000557439 PSMB2P49721 201 aa12.97□□□□□ -0.33
XRCC3-218ENST00000557439 IGLV4-3A0A075B6K6 122 aa12.96□□□□□ -0.33
XRCC3-218ENST00000557439 C11orf44Q8N8P7 122 aa12.96□□□□□ -0.33
XRCC3-218ENST00000557439 TSSC4Q9Y5U2 329 aaPredicted RBP12.96□□□□□ -0.33
XRCC3-218ENST00000557439 J3QLI3 93 aa12.96□□□□□ -0.34
XRCC3-218ENST00000557439 IGHV3-30P01768 117 aa12.96□□□□□ -0.34
XRCC3-218ENST00000557439 IGHV3-30-5P0DP03 117 aa12.96□□□□□ -0.34
XRCC3-218ENST00000557439 TRGV11A0A075B6L2 103 aa12.95□□□□□ -0.34
XRCC3-218ENST00000557439 H3BMM0 161 aa12.95□□□□□ -0.34
XRCC3-218ENST00000557439 FSHBP01225 129 aa12.95□□□□□ -0.34
XRCC3-218ENST00000557439 ZNF22P17026 224 aaPredicted RBP12.95□□□□□ -0.34
XRCC3-218ENST00000557439 LGALS3P17931 250 aaKnown RBP12.95□□□□□ -0.34
XRCC3-218ENST00000557439 NDUFA11Q86Y39 141 aa12.95□□□□□ -0.34
XRCC3-218ENST00000557439 UBR5O95071 2799 aaPredicted RBP12.95□□□□□ -0.34
XRCC3-218ENST00000557439 CFC1BP0CG36 223 aa12.95□□□□□ -0.34
XRCC3-218ENST00000557439 CFC1P0CG37 223 aa12.95□□□□□ -0.34
XRCC3-218ENST00000557439 RHOHQ15669 191 aa12.95□□□□□ -0.34
XRCC3-218ENST00000557439 GTSF1LQ9H1H1 148 aa12.95□□□□□ -0.34
XRCC3-218ENST00000557439 APCP25054 2843 aa12.94□□□□□ -0.34
XRCC3-218ENST00000557439 SMCPP49901 116 aaPredicted RBP12.94□□□□□ -0.34
XRCC3-218ENST00000557439 SLC25A29Q8N8R3 303 aa12.94□□□□□ -0.34
XRCC3-218ENST00000557439 ZNF418Q8TF45 676 aaPredicted RBP12.94□□□□□ -0.34
XRCC3-218ENST00000557439 FAM104AQ969W3 186 aa12.94□□□□□ -0.34
XRCC3-218ENST00000557439 IGHV3-38A0A0C4DH36 116 aa12.94□□□□□ -0.34
XRCC3-218ENST00000557439 TMEM223A0PJW6 202 aa12.94□□□□□ -0.34
XRCC3-218ENST00000557439 DLX4Q92988 240 aaPredicted RBP12.94□□□□□ -0.34
XRCC3-218ENST00000557439 PTH2Q96A98 100 aa12.94□□□□□ -0.34
XRCC3-218ENST00000557439 SPXQ9BT56 116 aa12.94□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 64.5 ms