RNA–Protein interactions for RNA: ENST00000557060.1

SYNE2-225, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 2

Gene SYNE2, Length 3,203 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-225ENST00000557060 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP4.34□□□□□ -1.72
SYNE2-225ENST00000557060 RNASE13Q5GAN3 156 aaKnown RBP4.34□□□□□ -1.72
SYNE2-225ENST00000557060 SLC25A34Q6PIV7 304 aa4.34□□□□□ -1.72
SYNE2-225ENST00000557060 DEFB125Q8N687 156 aa4.34□□□□□ -1.72
SYNE2-225ENST00000557060 INSP01308 110 aa4.33□□□□□ -1.72
SYNE2-225ENST00000557060 CRYGDP07320 174 aa4.33□□□□□ -1.72
SYNE2-225ENST00000557060 LINC00315P59091 139 aa4.33□□□□□ -1.72
SYNE2-225ENST00000557060 FHL3Q13643 280 aa4.33□□□□□ -1.72
SYNE2-225ENST00000557060 KIR2DL4Q99706 377 aa4.33□□□□□ -1.72
SYNE2-225ENST00000557060 TP53TG1Q9Y2A0 90 aa4.33□□□□□ -1.72
SYNE2-225ENST00000557060 TRGV11A0A075B6L2 103 aa4.33□□□□□ -1.72
SYNE2-225ENST00000557060 TRBV7-9A0A0J9YWB2 115 aa4.33□□□□□ -1.72
SYNE2-225ENST00000557060 K7EMI3 77 aa4.33□□□□□ -1.72
SYNE2-225ENST00000557060 CEMP1Q6PRD7 247 aaPredicted RBP4.33□□□□□ -1.72
SYNE2-225ENST00000557060 Q6ZSN1 163 aa4.33□□□□□ -1.72
SYNE2-225ENST00000557060 LINC00482Q8N8I6 264 aa4.33□□□□□ -1.72
SYNE2-225ENST00000557060 C9orf85Q96MD7 179 aa4.33□□□□□ -1.72
SYNE2-225ENST00000557060 KIF25-AS1Q9Y6Z4 181 aa4.33□□□□□ -1.72
SYNE2-225ENST00000557060 IGKV2D-26A0A0A0MRZ7 120 aa4.33□□□□□ -1.72
SYNE2-225ENST00000557060 ZNF25P17030 456 aaPredicted RBP4.33□□□□□ -1.72
SYNE2-225ENST00000557060 ADARB2-AS1A8MUL3 147 aa4.32□□□□□ -1.72
SYNE2-225ENST00000557060 NUTF2P61970 127 aaKnown RBP4.32□□□□□ -1.72
SYNE2-225ENST00000557060 ODF1Q14990 250 aa4.32□□□□□ -1.72
SYNE2-225ENST00000557060 JMJD8Q96S16 334 aa4.32□□□□□ -1.72
SYNE2-225ENST00000557060 NOP10Q9NPE3 64 aaKnown RBP4.32□□□□□ -1.72
SYNE2-225ENST00000557060 IGHV3-64A0A075B6Q5 118 aa4.32□□□□□ -1.72
SYNE2-225ENST00000557060 M0QY20 66 aa4.32□□□□□ -1.72
SYNE2-225ENST00000557060 DEFB4AO15263 64 aa4.32□□□□□ -1.72
SYNE2-225ENST00000557060 ORMDL2Q53FV1 153 aa4.32□□□□□ -1.72
SYNE2-225ENST00000557060 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP4.32□□□□□ -1.72
SYNE2-225ENST00000557060 MGAM2Q2M2H8 2515 aa4.31□□□□□ -1.72
SYNE2-225ENST00000557060 IGKCP01834 107 aa4.31□□□□□ -1.72
SYNE2-225ENST00000557060 SMCPP49901 116 aaPredicted RBP4.31□□□□□ -1.72
SYNE2-225ENST00000557060 ZNF415Q09FC8 603 aa4.31□□□□□ -1.72
SYNE2-225ENST00000557060 ZFP2Q6ZN57 461 aa4.31□□□□□ -1.72
SYNE2-225ENST00000557060 Q6ZTI0 123 aa4.31□□□□□ -1.72
SYNE2-225ENST00000557060 C1orf158Q8N1D5 194 aa4.31□□□□□ -1.72
SYNE2-225ENST00000557060 ODF3Q96PU9 254 aa4.31□□□□□ -1.72
SYNE2-225ENST00000557060 NAA38Q9BRA0 125 aaKnown RBP4.31□□□□□ -1.72
SYNE2-225ENST00000557060 GAGE12BA1L429 117 aa4.31□□□□□ -1.72
SYNE2-225ENST00000557060 PRSS29PA6NIE9 313 aa4.31□□□□□ -1.72
SYNE2-225ENST00000557060 ATP5LO75964 103 aa4.31□□□□□ -1.72
SYNE2-225ENST00000557060 GAGE7O76087 117 aa4.31□□□□□ -1.72
SYNE2-225ENST00000557060 GAGE12FP0CL80 117 aa4.31□□□□□ -1.72
SYNE2-225ENST00000557060 GAGE12GP0CL81 117 aa4.31□□□□□ -1.72
SYNE2-225ENST00000557060 GAGE12IP0CL82 117 aa4.31□□□□□ -1.72
SYNE2-225ENST00000557060 LGALS9BQ3B8N2 356 aa4.31□□□□□ -1.72
SYNE2-225ENST00000557060 LGALS9CQ6DKI2 356 aa4.31□□□□□ -1.72
SYNE2-225ENST00000557060 MORN3Q6PF18 240 aaPredicted RBP4.31□□□□□ -1.72
SYNE2-225ENST00000557060 C20orf78Q9BR46 151 aa4.31□□□□□ -1.72
SYNE2-225ENST00000557060 C16orf95Q9H693 158 aa4.31□□□□□ -1.72
SYNE2-225ENST00000557060 TNFRSF18Q9Y5U5 241 aa4.31□□□□□ -1.72
SYNE2-225ENST00000557060 TRGV2A0A075B6R0 118 aa4.31□□□□□ -1.72
SYNE2-225ENST00000557060 M0R2P5 195 aa4.31□□□□□ -1.72
SYNE2-225ENST00000557060 VCYO14598 125 aa4.31□□□□□ -1.72
SYNE2-225ENST00000557060 DPM2O94777 84 aa4.31□□□□□ -1.72
SYNE2-225ENST00000557060 DEFB130BP0DP73 79 aa4.31□□□□□ -1.72
SYNE2-225ENST00000557060 DEFB130AP0DP74 79 aa4.31□□□□□ -1.72
SYNE2-225ENST00000557060 MED14OSP0DP75 135 aa4.31□□□□□ -1.72
SYNE2-225ENST00000557060 ZNF479Q96JC4 524 aa4.31□□□□□ -1.72
SYNE2-225ENST00000557060 CYSLTR1Q9Y271 337 aa4.31□□□□□ -1.72
SYNE2-225ENST00000557060 K7EP13 123 aa4.3□□□□□ -1.72
SYNE2-225ENST00000557060 IGLV1-51P01701 117 aa4.3□□□□□ -1.72
SYNE2-225ENST00000557060 MDFIQ99750 246 aa4.3□□□□□ -1.72
SYNE2-225ENST00000557060 CHTOPQ9Y3Y2 248 aaKnown RBP4.3□□□□□ -1.72
SYNE2-225ENST00000557060 IGKV2D-29A0A075B6S2 120 aaPredicted RBP4.3□□□□□ -1.72
SYNE2-225ENST00000557060 IGKV2-29A2NJV5 120 aaPredicted RBP4.3□□□□□ -1.72
SYNE2-225ENST00000557060 NXPH4O95158 308 aa4.3□□□□□ -1.72
SYNE2-225ENST00000557060 TMEM170BQ5T4T1 132 aa4.3□□□□□ -1.72
SYNE2-225ENST00000557060 CFAP126Q5VTH2 177 aa4.3□□□□□ -1.72
SYNE2-225ENST00000557060 TRPT1Q86TN4 253 aaKnown RBP4.3□□□□□ -1.72
SYNE2-225ENST00000557060 OR4C5Q8NGB2 326 aa4.3□□□□□ -1.72
SYNE2-225ENST00000557060 BAALCQ8WXS3 180 aa4.3□□□□□ -1.72
SYNE2-225ENST00000557060 RAB37Q96AX2 223 aa4.3□□□□□ -1.72
SYNE2-225ENST00000557060 C2orf88Q9BSF0 95 aa4.3□□□□□ -1.72
SYNE2-225ENST00000557060 COX8AP10176 69 aa4.29□□□□□ -1.72
SYNE2-225ENST00000557060 COL5A1-AS1Q5SY13 56 aa4.29□□□□□ -1.72
SYNE2-225ENST00000557060 C11orf72Q8NBR9 251 aa4.29□□□□□ -1.72
SYNE2-225ENST00000557060 HHLA3Q9XRX5 114 aa4.29□□□□□ -1.72
SYNE2-225ENST00000557060 FAM229AH3BQW9 127 aa4.29□□□□□ -1.72
SYNE2-225ENST00000557060 PPP1R17O96001 155 aa4.29□□□□□ -1.72
SYNE2-225ENST00000557060 POLR2KP53803 58 aaKnown RBP4.29□□□□□ -1.72
SYNE2-225ENST00000557060 RRN3P1Q2M238 152 aa4.29□□□□□ -1.72
SYNE2-225ENST00000557060 ZNRF2Q8NHG8 242 aa4.29□□□□□ -1.72
SYNE2-225ENST00000557060 TOMM6Q96B49 74 aa4.29□□□□□ -1.72
SYNE2-225ENST00000557060 A0A087WX48 190 aa4.29□□□□□ -1.72
SYNE2-225ENST00000557060 CRLF1O75462 422 aa4.29□□□□□ -1.72
SYNE2-225ENST00000557060 GCSHP23434 173 aa4.29□□□□□ -1.72
SYNE2-225ENST00000557060 POM121L12Q8N7R1 296 aa4.29□□□□□ -1.72
SYNE2-225ENST00000557060 TRAV25A0A0B4J276 109 aa4.28□□□□□ -1.72
SYNE2-225ENST00000557060 IGKV3OR2-268A0A0C4DH90 116 aa4.28□□□□□ -1.72
SYNE2-225ENST00000557060 GAGE12JA6NER3 117 aa4.28□□□□□ -1.72
SYNE2-225ENST00000557060 NDUFA7O95182 113 aa4.28□□□□□ -1.72
SYNE2-225ENST00000557060 GIG44P09565 113 aaPredicted RBP4.28□□□□□ -1.72
SYNE2-225ENST00000557060 GAGE1Q13065 139 aa4.28□□□□□ -1.72
SYNE2-225ENST00000557060 GAGE4Q13068 117 aa4.28□□□□□ -1.72
SYNE2-225ENST00000557060 GAGE5Q13069 117 aa4.28□□□□□ -1.72
SYNE2-225ENST00000557060 GAGE13Q4V321 117 aa4.28□□□□□ -1.72
SYNE2-225ENST00000557060 NDUFA11Q86Y39 141 aa4.28□□□□□ -1.72
SYNE2-225ENST00000557060 A0A096LPF7 62 aa4.28□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms