RNA–Protein interactions for RNA: ENST00000555934.1

LINC00643-204, long intergenic non-protein coding RNA 643, humanhuman

TSL 2

Gene LINC00643, Length 1,184 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-204ENST00000555934 LINC00269Q8N2A0 174 aa2.09□□□□□ -2.07
LINC00643-204ENST00000555934 DYNLRB2Q8TF09 96 aa2.09□□□□□ -2.07
LINC00643-204ENST00000555934 PMCHL2Q9BQD1 86 aa2.09□□□□□ -2.07
LINC00643-204ENST00000555934 PARP14Q460N5 1801 aa2.09□□□□□ -2.08
LINC00643-204ENST00000555934 KIF20BQ96Q89 1820 aa2.09□□□□□ -2.08
LINC00643-204ENST00000555934 ITSN1Q15811 1721 aa2.08□□□□□ -2.08
LINC00643-204ENST00000555934 MON2Q7Z3U7 1717 aa2.08□□□□□ -2.08
LINC00643-204ENST00000555934 MARF1Q9Y4F3 1742 aaKnown RBP2.08□□□□□ -2.08
LINC00643-204ENST00000555934 PSME4Q14997 1843 aa2.08□□□□□ -2.08
LINC00643-204ENST00000555934 IGHV3-64A0A075B6Q5 118 aa2.08□□□□□ -2.08
LINC00643-204ENST00000555934 PIGBOS1A0A0B4J2F0 54 aa2.08□□□□□ -2.08
LINC00643-204ENST00000555934 SFT2D2O95562 160 aa2.08□□□□□ -2.08
LINC00643-204ENST00000555934 BAALC-AS2P0C853 105 aa2.08□□□□□ -2.08
LINC00643-204ENST00000555934 ADCYAP1P18509 176 aa2.08□□□□□ -2.08
LINC00643-204ENST00000555934 SSR2P43308 183 aa2.08□□□□□ -2.08
LINC00643-204ENST00000555934 DSCR4P56555 118 aaPredicted RBP2.08□□□□□ -2.08
LINC00643-204ENST00000555934 RBM3P98179 157 aaKnown RBP2.08□□□□□ -2.08
LINC00643-204ENST00000555934 ZNF345Q14585 488 aa2.08□□□□□ -2.08
LINC00643-204ENST00000555934 S100A7L2Q5SY68 101 aa2.08□□□□□ -2.08
LINC00643-204ENST00000555934 CASC2Q6XLA1 102 aa2.08□□□□□ -2.08
LINC00643-204ENST00000555934 Q6ZTI0 123 aa2.08□□□□□ -2.08
LINC00643-204ENST00000555934 REG4Q9BYZ8 158 aa2.08□□□□□ -2.08
LINC00643-204ENST00000555934 UQCR10Q9UDW1 63 aa2.08□□□□□ -2.08
LINC00643-204ENST00000555934 ALKQ9UM73 1620 aa2.08□□□□□ -2.08
LINC00643-204ENST00000555934 C3P01024 1663 aa2.08□□□□□ -2.08
LINC00643-204ENST00000555934 PREX1Q8TCU6 1659 aa2.08□□□□□ -2.08
LINC00643-204ENST00000555934 RGPD1P0DJD0 1748 aa2.08□□□□□ -2.08
LINC00643-204ENST00000555934 SBF2Q86WG5 1849 aa2.07□□□□□ -2.08
LINC00643-204ENST00000555934 CEP170BQ9Y4F5 1589 aaPredicted RBP2.07□□□□□ -2.08
LINC00643-204ENST00000555934 TOPAZ1Q8N9V7 1692 aa2.07□□□□□ -2.08
LINC00643-204ENST00000555934 IGLC7A0M8Q6 106 aa2.07□□□□□ -2.08
LINC00643-204ENST00000555934 E7EUB6 86 aa2.07□□□□□ -2.08
LINC00643-204ENST00000555934 IGKCP01834 107 aa2.07□□□□□ -2.08
LINC00643-204ENST00000555934 APOC3P02656 99 aa2.07□□□□□ -2.08
LINC00643-204ENST00000555934 CBLN1P23435 193 aa2.07□□□□□ -2.08
LINC00643-204ENST00000555934 KIAA2026Q5HYC2 2103 aa2.07□□□□□ -2.08
LINC00643-204ENST00000555934 COMMD6Q7Z4G1 85 aa2.07□□□□□ -2.08
LINC00643-204ENST00000555934 C15orf53Q8NAA6 179 aa2.07□□□□□ -2.08
LINC00643-204ENST00000555934 TMEM141Q96I45 108 aa2.07□□□□□ -2.08
LINC00643-204ENST00000555934 NDUFA12Q9UI09 145 aa2.07□□□□□ -2.08
LINC00643-204ENST00000555934 RICTORQ6R327 1708 aa2.07□□□□□ -2.08
LINC00643-204ENST00000555934 TNRC6AQ8NDV7 1962 aaKnown RBP2.07□□□□□ -2.08
LINC00643-204ENST00000555934 SLIT1O75093 1534 aa2.07□□□□□ -2.08
LINC00643-204ENST00000555934 ABCC6O95255 1503 aa2.07□□□□□ -2.08
LINC00643-204ENST00000555934 MUC6Q6W4X9 2439 aa2.06□□□□□ -2.08
LINC00643-204ENST00000555934 A0A087WSZ3 146 aa2.06□□□□□ -2.08
LINC00643-204ENST00000555934 TRAV2A0A0B4J234 112 aa2.06□□□□□ -2.08
LINC00643-204ENST00000555934 TRBV7-7A0A0K0K1E9 115 aa2.06□□□□□ -2.08
LINC00643-204ENST00000555934 hADV29S1A0JD25 119 aa2.06□□□□□ -2.08
LINC00643-204ENST00000555934 HMSDA8MTL9 139 aa2.06□□□□□ -2.08
LINC00643-204ENST00000555934 IBA57-AS1B1ANH7 110 aa2.06□□□□□ -2.08
LINC00643-204ENST00000555934 ATOX1O00244 68 aa2.06□□□□□ -2.08
LINC00643-204ENST00000555934 CCKP06307 115 aa2.06□□□□□ -2.08
LINC00643-204ENST00000555934 MIFP14174 115 aa2.06□□□□□ -2.08
LINC00643-204ENST00000555934 DEFA5Q01523 94 aa2.06□□□□□ -2.08
LINC00643-204ENST00000555934 RHOHQ15669 191 aa2.06□□□□□ -2.08
LINC00643-204ENST00000555934 ZNF791Q3KP31 576 aaPredicted RBP2.06□□□□□ -2.08
LINC00643-204ENST00000555934 Q5BKY6 102 aa2.06□□□□□ -2.08
LINC00643-204ENST00000555934 OR8B3Q8NGG8 313 aa2.06□□□□□ -2.08
LINC00643-204ENST00000555934 TMEM254Q8TBM7 123 aa2.06□□□□□ -2.08
LINC00643-204ENST00000555934 SPACA4Q8TDM5 124 aa2.06□□□□□ -2.08
LINC00643-204ENST00000555934 TSLPQ969D9 159 aa2.06□□□□□ -2.08
LINC00643-204ENST00000555934 S100A16Q96FQ6 103 aaKnown RBP2.06□□□□□ -2.08
LINC00643-204ENST00000555934 C20orf78Q9BR46 151 aa2.06□□□□□ -2.08
LINC00643-204ENST00000555934 SMCO4Q9NRQ5 59 aa2.06□□□□□ -2.08
LINC00643-204ENST00000555934 MYLKQ15746 1914 aa2.06□□□□□ -2.08
LINC00643-204ENST00000555934 MRC1P22897 1456 aa2.06□□□□□ -2.08
LINC00643-204ENST00000555934 PHRF1Q9P1Y6 1649 aaKnown RBP2.06□□□□□ -2.08
LINC00643-204ENST00000555934 NRXN3Q9Y4C0 1643 aa2.06□□□□□ -2.08
LINC00643-204ENST00000555934 FAM208AQ9UK61 1670 aaKnown RBP2.06□□□□□ -2.08
LINC00643-204ENST00000555934 SIPA1L2Q9P2F8 1722 aaPredicted RBP2.05□□□□□ -2.08
LINC00643-204ENST00000555934 CHD3Q12873 2000 aaKnown RBP2.05□□□□□ -2.08
LINC00643-204ENST00000555934 PDCD5O14737 125 aa2.05□□□□□ -2.08
LINC00643-204ENST00000555934 NUPR1O60356 82 aa2.05□□□□□ -2.08
LINC00643-204ENST00000555934 ERC2-IT1O76042 136 aa2.05□□□□□ -2.08
LINC00643-204ENST00000555934 FAUP35544 74 aaKnown RBP2.05□□□□□ -2.08
LINC00643-204ENST00000555934 POLR2JP52435 117 aaKnown RBP2.05□□□□□ -2.08
LINC00643-204ENST00000555934 KRTDAPP60985 99 aa2.05□□□□□ -2.08
LINC00643-204ENST00000555934 Q1T7F1 81 aa2.05□□□□□ -2.08
LINC00643-204ENST00000555934 DEFB113Q30KQ7 82 aa2.05□□□□□ -2.08
LINC00643-204ENST00000555934 RPL7L1Q6DKI1 246 aaKnown RBP2.05□□□□□ -2.08
LINC00643-204ENST00000555934 ZCCHC23Q6ZST2 131 aa2.05□□□□□ -2.08
LINC00643-204ENST00000555934 ANKARQ7Z5J8 1434 aa2.05□□□□□ -2.08
LINC00643-204ENST00000555934 DOCK1Q14185 1865 aa2.05□□□□□ -2.08
LINC00643-204ENST00000555934 CR1P17927 2039 aa2.05□□□□□ -2.08
LINC00643-204ENST00000555934 MALRD1Q5VYJ5 2156 aa2.05□□□□□ -2.08
LINC00643-204ENST00000555934 TRAV10A0A0B4J240 114 aa2.04□□□□□ -2.08
LINC00643-204ENST00000555934 TRAV17A0A0B4J275 112 aa2.04□□□□□ -2.08
LINC00643-204ENST00000555934 A6NIN4 97 aa2.04□□□□□ -2.08
LINC00643-204ENST00000555934 ASAH2BP0C7U1 165 aa2.04□□□□□ -2.08
LINC00643-204ENST00000555934 UBE2G1P62253 170 aa2.04□□□□□ -2.08
LINC00643-204ENST00000555934 SLC48A1Q6P1K1 146 aa2.04□□□□□ -2.08
LINC00643-204ENST00000555934 LINC00299Q6ZSB3 139 aa2.04□□□□□ -2.08
LINC00643-204ENST00000555934 XRN1Q8IZH2 1706 aaKnown RBP2.04□□□□□ -2.08
LINC00643-204ENST00000555934 FAM213BQ8TBF2 198 aa2.04□□□□□ -2.08
LINC00643-204ENST00000555934 PLIN4Q96Q06 1357 aa2.04□□□□□ -2.08
LINC00643-204ENST00000555934 MRPL35Q9NZE8 188 aaKnown RBP2.04□□□□□ -2.08
LINC00643-204ENST00000555934 RABAC1Q9UI14 185 aa2.04□□□□□ -2.08
LINC00643-204ENST00000555934 NUMA1Q14980 2115 aa2.03□□□□□ -2.08
LINC00643-204ENST00000555934 CCDC88CQ9P219 2028 aa2.03□□□□□ -2.08
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms