RNA–Protein interactions for RNA: ENST00000555402.1

VRK1-205, Transcript of vaccinia related kinase 1, humanhuman

TSL 3

Gene VRK1, Length 415 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-205ENST00000555402 RREB1Q92766 1687 aa1.84□□□□□ -2.11
VRK1-205ENST00000555402 MT-ATP8P03928 68 aa1.84□□□□□ -2.11
VRK1-205ENST00000555402 LINC00032P0C843 101 aa1.84□□□□□ -2.11
VRK1-205ENST00000555402 IL9P15248 144 aa1.84□□□□□ -2.11
VRK1-205ENST00000555402 PDE6GP18545 87 aa1.84□□□□□ -2.11
VRK1-205ENST00000555402 LINC00322Q6ZN03 302 aaPredicted RBP1.84□□□□□ -2.11
VRK1-205ENST00000555402 SNURFQ9Y675 71 aa1.84□□□□□ -2.11
VRK1-205ENST00000555402 MYOFQ9NZM1 2061 aa1.84□□□□□ -2.12
VRK1-205ENST00000555402 ABCC5O15440 1437 aa1.83□□□□□ -2.12
VRK1-205ENST00000555402 CCDC18Q5T9S5 1454 aa1.83□□□□□ -2.12
VRK1-205ENST00000555402 PLEKHH2Q8IVE3 1493 aa1.83□□□□□ -2.12
VRK1-205ENST00000555402 MAGI1Q96QZ7 1491 aaPredicted RBP1.83□□□□□ -2.12
VRK1-205ENST00000555402 SHANK2Q9UPX8 1470 aa1.83□□□□□ -2.12
VRK1-205ENST00000555402 DLEC1Q9Y238 1755 aa1.83□□□□□ -2.12
VRK1-205ENST00000555402 TNRC6BQ9UPQ9 1833 aaKnown RBP1.83□□□□□ -2.12
VRK1-205ENST00000555402 IGLV3-32A0A0A0MS00 114 aa1.83□□□□□ -2.12
VRK1-205ENST00000555402 H3BQ15 152 aa1.83□□□□□ -2.12
VRK1-205ENST00000555402 HCRTO43612 131 aa1.83□□□□□ -2.12
VRK1-205ENST00000555402 IGHV3-30P01768 117 aa1.83□□□□□ -2.12
VRK1-205ENST00000555402 IGHV3-30-5P0DP03 117 aa1.83□□□□□ -2.12
VRK1-205ENST00000555402 RPL37AP61513 92 aaKnown RBP1.83□□□□□ -2.12
VRK1-205ENST00000555402 CYP2G1PQ6ZSU1 146 aa1.83□□□□□ -2.12
VRK1-205ENST00000555402 KDM5AP29375 1690 aaKnown RBP1.83□□□□□ -2.12
VRK1-205ENST00000555402 NRXN2Q9P2S2 1712 aa1.83□□□□□ -2.12
VRK1-205ENST00000555402 PPIP5K1Q6PFW1 1433 aa1.83□□□□□ -2.12
VRK1-205ENST00000555402 HCG22E2RYF7 251 aa1.82□□□□□ -2.12
VRK1-205ENST00000555402 INE1O15225 51 aa1.82□□□□□ -2.12
VRK1-205ENST00000555402 ANGP03950 147 aaKnown RBP1.82□□□□□ -2.12
VRK1-205ENST00000555402 CCKP06307 115 aa1.82□□□□□ -2.12
VRK1-205ENST00000555402 LYNX1P0DP58 116 aa1.82□□□□□ -2.12
VRK1-205ENST00000555402 LINC00312Q9Y6C7 94 aa1.82□□□□□ -2.12
VRK1-205ENST00000555402 MED14O60244 1454 aa1.82□□□□□ -2.12
VRK1-205ENST00000555402 ADGRB2O60241 1585 aa1.81□□□□□ -2.12
VRK1-205ENST00000555402 MED13Q9UHV7 2174 aa1.81□□□□□ -2.12
VRK1-205ENST00000555402 CCL8P80075 99 aa1.81□□□□□ -2.12
VRK1-205ENST00000555402 C4orf33Q8N1A6 199 aa1.81□□□□□ -2.12
VRK1-205ENST00000555402 MYOZ3Q8TDC0 251 aa1.81□□□□□ -2.12
VRK1-205ENST00000555402 DOCK2Q92608 1830 aa1.81□□□□□ -2.12
VRK1-205ENST00000555402 TCHHQ07283 1943 aa1.81□□□□□ -2.12
VRK1-205ENST00000555402 MON2Q7Z3U7 1717 aa1.8□□□□□ -2.12
VRK1-205ENST00000555402 HIGD1CA8MV81 97 aa1.8□□□□□ -2.12
VRK1-205ENST00000555402 M0R2N4 97 aa1.8□□□□□ -2.12
VRK1-205ENST00000555402 GNGT2O14610 69 aa1.8□□□□□ -2.12
VRK1-205ENST00000555402 UBE2D1P51668 147 aa1.8□□□□□ -2.12
VRK1-205ENST00000555402 GNG11P61952 73 aa1.8□□□□□ -2.12
VRK1-205ENST00000555402 SPATA45Q537H7 98 aa1.8□□□□□ -2.12
VRK1-205ENST00000555402 ZNF818PQ6ZRF7 136 aa1.8□□□□□ -2.12
VRK1-205ENST00000555402 PMCHL2Q9BQD1 86 aa1.8□□□□□ -2.12
VRK1-205ENST00000555402 LINC00474Q9P2X8 69 aa1.8□□□□□ -2.12
VRK1-205ENST00000555402 SCP2D1Q9UJQ7 156 aa1.8□□□□□ -2.12
VRK1-205ENST00000555402 MUC6Q6W4X9 2439 aa1.8□□□□□ -2.12
VRK1-205ENST00000555402 GOLGA3Q08378 1498 aa1.8□□□□□ -2.12
VRK1-205ENST00000555402 ABCC3O15438 1527 aa1.8□□□□□ -2.12
VRK1-205ENST00000555402 MARF1Q9Y4F3 1742 aaKnown RBP1.8□□□□□ -2.12
VRK1-205ENST00000555402 TANC1Q9C0D5 1861 aa1.8□□□□□ -2.12
VRK1-205ENST00000555402 INTS1Q8N201 2190 aaKnown RBP1.79□□□□□ -2.12
VRK1-205ENST00000555402 LOC110117498A0A087WWA1 95 aa1.79□□□□□ -2.12
VRK1-205ENST00000555402 NAP1L6A6NFF2 107 aa1.79□□□□□ -2.12
VRK1-205ENST00000555402 SIX6O95475 246 aa1.79□□□□□ -2.12
VRK1-205ENST00000555402 Q0VG73 95 aa1.79□□□□□ -2.12
VRK1-205ENST00000555402 AMELYQ99218 206 aa1.79□□□□□ -2.12
VRK1-205ENST00000555402 CYP4F30PQ9H0H9 118 aa1.79□□□□□ -2.12
VRK1-205ENST00000555402 FAIMQ9NVQ4 179 aa1.79□□□□□ -2.12
VRK1-205ENST00000555402 ANKRD36BQ8N2N9 1353 aa1.79□□□□□ -2.12
VRK1-205ENST00000555402 TOP2BQ02880 1626 aa1.79□□□□□ -2.12
VRK1-205ENST00000555402 PARP14Q460N5 1801 aa1.79□□□□□ -2.12
VRK1-205ENST00000555402 NINQ8N4C6 2090 aa1.79□□□□□ -2.12
VRK1-205ENST00000555402 PRRC2BQ5JSZ5 2229 aaKnown RBP1.79□□□□□ -2.12
VRK1-205ENST00000555402 ARHGEF12Q9NZN5 1544 aa1.78□□□□□ -2.12
VRK1-205ENST00000555402 TRBV6-7A0A0A0MS04 114 aa1.78□□□□□ -2.12
VRK1-205ENST00000555402 TRBV7-1A0A0A6YYK4 115 aa1.78□□□□□ -2.12
VRK1-205ENST00000555402 TEX49A0A1B0GTD5 131 aa1.78□□□□□ -2.12
VRK1-205ENST00000555402 hADV29S1A0JD25 119 aa1.78□□□□□ -2.12
VRK1-205ENST00000555402 KRTDAPP60985 99 aa1.78□□□□□ -2.12
VRK1-205ENST00000555402 GDF5OSQ5U4N7 250 aa1.78□□□□□ -2.12
VRK1-205ENST00000555402 FAM213BQ8TBF2 198 aa1.78□□□□□ -2.12
VRK1-205ENST00000555402 TSLPQ969D9 159 aa1.78□□□□□ -2.12
VRK1-205ENST00000555402 SBF2Q86WG5 1849 aa1.77□□□□□ -2.13
VRK1-205ENST00000555402 LRRC37A3O60309 1634 aa1.77□□□□□ -2.13
VRK1-205ENST00000555402 BLMP54132 1417 aaPredicted RBP1.77□□□□□ -2.13
VRK1-205ENST00000555402 LOC101927531A0A1B0GV80 90 aa1.77□□□□□ -2.13
VRK1-205ENST00000555402 CRYM-AS1A6NIL9 109 aa1.77□□□□□ -2.13
VRK1-205ENST00000555402 IGLC1P0CG04 106 aa1.77□□□□□ -2.13
VRK1-205ENST00000555402 PRO1933Q9H354 126 aa1.77□□□□□ -2.13
VRK1-205ENST00000555402 CHD3Q12873 2000 aaKnown RBP1.77□□□□□ -2.13
VRK1-205ENST00000555402 E9PCH4 1651 aa1.77□□□□□ -2.13
VRK1-205ENST00000555402 ARFGEF3Q5TH69 2177 aa1.76□□□□□ -2.13
VRK1-205ENST00000555402 PRDM15P57071 1507 aaPredicted RBP1.76□□□□□ -2.13
VRK1-205ENST00000555402 PXDNQ92626 1479 aa1.76□□□□□ -2.13
VRK1-205ENST00000555402 ARHGAP35Q9NRY4 1499 aa1.76□□□□□ -2.13
VRK1-205ENST00000555402 CASP8AP2Q9UKL3 1982 aa1.76□□□□□ -2.13
VRK1-205ENST00000555402 RP1L1Q8IWN7 2480 aaPredicted RBP1.76□□□□□ -2.13
VRK1-205ENST00000555402 PLXNA1Q9UIW2 1896 aa1.76□□□□□ -2.13
VRK1-205ENST00000555402 ARFGEF1Q9Y6D6 1849 aa1.76□□□□□ -2.13
VRK1-205ENST00000555402 FXYD3Q14802 87 aa1.76□□□□□ -2.13
VRK1-205ENST00000555402 C10orf128Q5T292 105 aa1.76□□□□□ -2.13
VRK1-205ENST00000555402 C20orf197Q8N268 126 aa1.76□□□□□ -2.13
VRK1-205ENST00000555402 OBSCN-AS1Q96MR7 158 aa1.76□□□□□ -2.13
VRK1-205ENST00000555402 UNC13CQ8NB66 2214 aa1.76□□□□□ -2.13
VRK1-205ENST00000555402 ALPK2Q86TB3 2170 aa1.76□□□□□ -2.13
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms