RNA–Protein interactions for RNA: ENST00000554467.5

SHMT2-212, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 3,416 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-212ENST00000554467 TNFRSF6BO95407 300 aa8.71□□□□□ -1.01
SHMT2-212ENST00000554467 S100A4P26447 101 aaKnown RBP8.71□□□□□ -1.01
SHMT2-212ENST00000554467 RNF185Q96GF1 192 aa8.71□□□□□ -1.01
SHMT2-212ENST00000554467 TMEM160Q9NX00 188 aa8.71□□□□□ -1.01
SHMT2-212ENST00000554467 CD28P10747 220 aa8.71□□□□□ -1.02
SHMT2-212ENST00000554467 RNF152Q8N8N0 203 aa8.71□□□□□ -1.02
SHMT2-212ENST00000554467 TMEM158Q8WZ71 300 aa8.71□□□□□ -1.02
SHMT2-212ENST00000554467 CYSLTR1Q9Y271 337 aa8.71□□□□□ -1.02
SHMT2-212ENST00000554467 LINC01619G3V211 115 aa8.7□□□□□ -1.02
SHMT2-212ENST00000554467 NHLRC4P0CG21 123 aaPredicted RBP8.7□□□□□ -1.02
SHMT2-212ENST00000554467 PTH2Q96A98 100 aa8.7□□□□□ -1.02
SHMT2-212ENST00000554467 CARD19Q96LW7 228 aa8.7□□□□□ -1.02
SHMT2-212ENST00000554467 MORN3Q6PF18 240 aaPredicted RBP8.7□□□□□ -1.02
SHMT2-212ENST00000554467 C1QTNF4Q9BXJ3 329 aa8.7□□□□□ -1.02
SHMT2-212ENST00000554467 MUC4Q99102 2169 aa8.7□□□□□ -1.02
SHMT2-212ENST00000554467 TRAV21A0A0B4J279 112 aa8.7□□□□□ -1.02
SHMT2-212ENST00000554467 KNCNA6PVL3 124 aa8.7□□□□□ -1.02
SHMT2-212ENST00000554467 K7EQG2 157 aa8.7□□□□□ -1.02
SHMT2-212ENST00000554467 FCER1GP30273 86 aa8.7□□□□□ -1.02
SHMT2-212ENST00000554467 SNRPD3P62318 126 aaKnown RBP8.7□□□□□ -1.02
SHMT2-212ENST00000554467 SPINK13Q1W4C9 94 aa8.7□□□□□ -1.02
SHMT2-212ENST00000554467 RRN3P1Q2M238 152 aa8.7□□□□□ -1.02
SHMT2-212ENST00000554467 CFAP126Q5VTH2 177 aa8.7□□□□□ -1.02
SHMT2-212ENST00000554467 B5MCH6 92 aa8.69□□□□□ -1.02
SHMT2-212ENST00000554467 ATRQ13535 2644 aa8.69□□□□□ -1.02
SHMT2-212ENST00000554467 FAM19A4Q96LR4 140 aa8.69□□□□□ -1.02
SHMT2-212ENST00000554467 TMEM61Q8N0U2 210 aa8.68□□□□□ -1.02
SHMT2-212ENST00000554467 PRSS29PA6NIE9 313 aa8.68□□□□□ -1.02
SHMT2-212ENST00000554467 LGALS9O00182 355 aa8.68□□□□□ -1.02
SHMT2-212ENST00000554467 MGPP08493 103 aa8.68□□□□□ -1.02
SHMT2-212ENST00000554467 HTN1P15515 57 aa8.68□□□□□ -1.02
SHMT2-212ENST00000554467 ZC2HC1BQ5TFG8 222 aa8.68□□□□□ -1.02
SHMT2-212ENST00000554467 C4orf3Q8WVX3 66 aa8.68□□□□□ -1.02
SHMT2-212ENST00000554467 CITED2Q99967 270 aaPredicted RBP8.68□□□□□ -1.02
SHMT2-212ENST00000554467 CNFNQ9BYD5 112 aa8.68□□□□□ -1.02
SHMT2-212ENST00000554467 PRM2P04554 102 aa8.68□□□□□ -1.02
SHMT2-212ENST00000554467 HERV-K104P63124 156 aa8.68□□□□□ -1.02
SHMT2-212ENST00000554467 LENEPQ9Y5L5 61 aa8.68□□□□□ -1.02
SHMT2-212ENST00000554467 A0A0J9YX75 114 aa8.67□□□□□ -1.02
SHMT2-212ENST00000554467 RAX2Q96IS3 184 aa8.67□□□□□ -1.02
SHMT2-212ENST00000554467 PHLDA3Q9Y5J5 127 aa8.67□□□□□ -1.02
SHMT2-212ENST00000554467 TEP1Q99973 2627 aaKnown RBP8.67□□□□□ -1.02
SHMT2-212ENST00000554467 IGKCP01834 107 aa8.67□□□□□ -1.02
SHMT2-212ENST00000554467 ASIPP42127 132 aa8.67□□□□□ -1.02
SHMT2-212ENST00000554467 DEFB131AP59861 70 aa8.67□□□□□ -1.02
SHMT2-212ENST00000554467 TMEM86BQ8N661 226 aa8.67□□□□□ -1.02
SHMT2-212ENST00000554467 C14orf178Q8N769 122 aaPredicted RBP8.67□□□□□ -1.02
SHMT2-212ENST00000554467 GAGE5Q13069 117 aa8.67□□□□□ -1.02
SHMT2-212ENST00000554467 GAGE6Q13070 117 aa8.67□□□□□ -1.02
SHMT2-212ENST00000554467 LINC01006Q8NI28 216 aa8.67□□□□□ -1.02
SHMT2-212ENST00000554467 JPT2Q9H910 190 aa8.67□□□□□ -1.02
SHMT2-212ENST00000554467 TRBV7-3A0A075B6L6 115 aa8.66□□□□□ -1.02
SHMT2-212ENST00000554467 CD7P09564 240 aa8.66□□□□□ -1.02
SHMT2-212ENST00000554467 APRG1Q8IVJ8 170 aa8.66□□□□□ -1.02
SHMT2-212ENST00000554467 DYNLRB2Q8TF09 96 aa8.66□□□□□ -1.02
SHMT2-212ENST00000554467 ANAPC13Q9BS18 74 aa8.66□□□□□ -1.02
SHMT2-212ENST00000554467 TRBV7-9A0A0J9YWB2 115 aa8.66□□□□□ -1.02
SHMT2-212ENST00000554467 RNASE3P12724 160 aaKnown RBP8.66□□□□□ -1.02
SHMT2-212ENST00000554467 ZFP2Q6ZN57 461 aa8.66□□□□□ -1.02
SHMT2-212ENST00000554467 KLLNB2CW77 178 aa8.66□□□□□ -1.02
SHMT2-212ENST00000554467 SFTA2Q6UW10 78 aa8.66□□□□□ -1.02
SHMT2-212ENST00000554467 FAM159AQ6UWV7 190 aa8.66□□□□□ -1.02
SHMT2-212ENST00000554467 LY6G6DO95868 133 aa8.65□□□□□ -1.03
SHMT2-212ENST00000554467 KIR2DL4Q99706 377 aa8.65□□□□□ -1.03
SHMT2-212ENST00000554467 TEX29Q8N6K0 151 aa8.64□□□□□ -1.03
SHMT2-212ENST00000554467 ATP6V0E2Q8NHE4 81 aa8.64□□□□□ -1.03
SHMT2-212ENST00000554467 NXT2Q9NPJ8 142 aaKnown RBP8.64□□□□□ -1.03
SHMT2-212ENST00000554467 NBEAL2Q6ZNJ1 2754 aa8.64□□□□□ -1.03
SHMT2-212ENST00000554467 LINC01546A6NGU7 62 aa8.64□□□□□ -1.03
SHMT2-212ENST00000554467 HIST1H4GQ99525 98 aa8.64□□□□□ -1.03
SHMT2-212ENST00000554467 MRPL35Q9NZE8 188 aaKnown RBP8.64□□□□□ -1.03
SHMT2-212ENST00000554467 MDFICQ9P1T7 246 aa8.64□□□□□ -1.03
SHMT2-212ENST00000554467 FAM110AQ9BQ89 295 aa8.64□□□□□ -1.03
SHMT2-212ENST00000554467 CCL24O00175 119 aa8.63□□□□□ -1.03
SHMT2-212ENST00000554467 PEMTQ9UBM1 199 aa8.63□□□□□ -1.03
SHMT2-212ENST00000554467 A0A087WWL8 130 aa8.63□□□□□ -1.03
SHMT2-212ENST00000554467 NSUN5P1Q3KNT7 163 aa8.63□□□□□ -1.03
SHMT2-212ENST00000554467 RPL39LQ96EH5 51 aaKnown RBP8.63□□□□□ -1.03
SHMT2-212ENST00000554467 CITED1Q99966 193 aa8.63□□□□□ -1.03
SHMT2-212ENST00000554467 CCDC179H3BU77 68 aa8.62□□□□□ -1.03
SHMT2-212ENST00000554467 DPM2O94777 84 aa8.62□□□□□ -1.03
SHMT2-212ENST00000554467 RNASE1P07998 156 aaKnown RBP8.62□□□□□ -1.03
SHMT2-212ENST00000554467 RBMY1A1P0DJD3 496 aaKnown RBP8.62□□□□□ -1.03
SHMT2-212ENST00000554467 RBMY1CP0DJD4 496 aa8.62□□□□□ -1.03
SHMT2-212ENST00000554467 EMP1P54849 157 aa8.62□□□□□ -1.03
SHMT2-212ENST00000554467 RBMY1FQ15415 496 aaKnown RBP8.62□□□□□ -1.03
SHMT2-212ENST00000554467 TAL2Q16559 108 aa8.62□□□□□ -1.03
SHMT2-212ENST00000554467 Q8N1Y9 231 aa8.62□□□□□ -1.03
SHMT2-212ENST00000554467 F8P00451 2351 aa8.62□□□□□ -1.03
SHMT2-212ENST00000554467 RBMY1BA6NDE4 496 aaKnown RBP8.62□□□□□ -1.03
SHMT2-212ENST00000554467 RBMY1EA6NEQ0 496 aaKnown RBP8.62□□□□□ -1.03
SHMT2-212ENST00000554467 RBMY1DP0C7P1 496 aaKnown RBP8.62□□□□□ -1.03
SHMT2-212ENST00000554467 HLA-DRB4P13762 266 aa8.62□□□□□ -1.03
SHMT2-212ENST00000554467 RPL32P62910 135 aaKnown RBP8.62□□□□□ -1.03
SHMT2-212ENST00000554467 DEFB114Q30KQ6 69 aa8.62□□□□□ -1.03
SHMT2-212ENST00000554467 HLA-DRB4X5D2U9 266 aa8.62□□□□□ -1.03
SHMT2-212ENST00000554467 NACAE9PAV3 2078 aa8.61□□□□□ -1.03
SHMT2-212ENST00000554467 INAFM1C9JVW0 142 aa8.61□□□□□ -1.03
SHMT2-212ENST00000554467 LAGE3Q14657 143 aa8.61□□□□□ -1.03
SHMT2-212ENST00000554467 SMIM20Q8N5G0 67 aa8.61□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms