RNA–Protein interactions for RNA: ENST00000553308.1

SYNE2-209, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 4

Gene SYNE2, Length 557 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-209ENST00000553308 C7orf33Q8WU49 177 aa5.72□□□□□ -1.49
SYNE2-209ENST00000553308 HIST1H2BAQ96A08 127 aa5.72□□□□□ -1.49
SYNE2-209ENST00000553308 DERL1Q9BUN8 251 aa5.72□□□□□ -1.49
SYNE2-209ENST00000553308 PLAC8Q9NZF1 115 aa5.72□□□□□ -1.49
SYNE2-209ENST00000553308 VAX2Q9UIW0 290 aa5.72□□□□□ -1.49
SYNE2-209ENST00000553308 TNFSF18Q9UNG2 199 aa5.72□□□□□ -1.49
SYNE2-209ENST00000553308 TRBV25-1A0A075B6N4 114 aa5.71□□□□□ -1.5
SYNE2-209ENST00000553308 MUC21A0A0G2JKD1 596 aa5.71□□□□□ -1.5
SYNE2-209ENST00000553308 TRBV6-1A0A0K0K1D8 114 aa5.71□□□□□ -1.5
SYNE2-209ENST00000553308 MUC21A0A140T8X8 626 aa5.71□□□□□ -1.5
SYNE2-209ENST00000553308 F5H697 171 aa5.71□□□□□ -1.5
SYNE2-209ENST00000553308 GAS8-AS1O95177 125 aa5.71□□□□□ -1.5
SYNE2-209ENST00000553308 UBE2G1P62253 170 aa5.71□□□□□ -1.5
SYNE2-209ENST00000553308 PRR3P79522 188 aaKnown RBP5.71□□□□□ -1.5
SYNE2-209ENST00000553308 TMEM97Q5BJF2 176 aa5.71□□□□□ -1.5
SYNE2-209ENST00000553308 C20orf203Q8NBC4 194 aa5.71□□□□□ -1.5
SYNE2-209ENST00000553308 S100ZQ8WXG8 99 aa5.71□□□□□ -1.5
SYNE2-209ENST00000553308 FMC1Q96HJ9 113 aa5.71□□□□□ -1.5
SYNE2-209ENST00000553308 AP5S1Q9NUS5 200 aa5.71□□□□□ -1.5
SYNE2-209ENST00000553308 TRAV16A0A0A6YYK6 109 aaPredicted RBP5.7□□□□□ -1.5
SYNE2-209ENST00000553308 A0A0J9YXV3 536 aa5.7□□□□□ -1.5
SYNE2-209ENST00000553308 CTXND1A0A1B0GTU2 59 aa5.7□□□□□ -1.5
SYNE2-209ENST00000553308 LTAP01374 205 aa5.7□□□□□ -1.5
SYNE2-209ENST00000553308 RAB5CP51148 216 aa5.7□□□□□ -1.5
SYNE2-209ENST00000553308 SSTP61278 116 aa5.7□□□□□ -1.5
SYNE2-209ENST00000553308 IQCJQ1A5X6 159 aa5.7□□□□□ -1.5
SYNE2-209ENST00000553308 WDR73Q6P4I2 378 aa5.7□□□□□ -1.5
SYNE2-209ENST00000553308 AQP10Q96PS8 301 aa5.7□□□□□ -1.5
SYNE2-209ENST00000553308 ZNF471Q9BX82 626 aaPredicted RBP5.7□□□□□ -1.5
SYNE2-209ENST00000553308 GFRA4Q9GZZ7 299 aa5.7□□□□□ -1.5
SYNE2-209ENST00000553308 IGLV4-60A0A075B6I1 120 aa5.69□□□□□ -1.5
SYNE2-209ENST00000553308 IGHV1-24A0A0C4DH33 117 aa5.69□□□□□ -1.5
SYNE2-209ENST00000553308 SNAI2O43623 268 aa5.69□□□□□ -1.5
SYNE2-209ENST00000553308 COX6A2Q02221 97 aa5.69□□□□□ -1.5
SYNE2-209ENST00000553308 MAJINQ3KP22 176 aa5.69□□□□□ -1.5
SYNE2-209ENST00000553308 RPL7L1Q6DKI1 246 aaKnown RBP5.69□□□□□ -1.5
SYNE2-209ENST00000553308 LINC00299Q6ZSB3 139 aa5.69□□□□□ -1.5
SYNE2-209ENST00000553308 GTSF1Q8WW33 167 aa5.69□□□□□ -1.5
SYNE2-209ENST00000553308 NKX6-2Q9C056 277 aaPredicted RBP5.69□□□□□ -1.5
SYNE2-209ENST00000553308 NDUFA13Q9P0J0 144 aa5.69□□□□□ -1.5
SYNE2-209ENST00000553308 TRAV8-4A0A0B4J246 113 aa5.68□□□□□ -1.5
SYNE2-209ENST00000553308 IGKV2-24A0A0C4DH68 120 aa5.68□□□□□ -1.5
SYNE2-209ENST00000553308 A6NHS1 94 aa5.68□□□□□ -1.5
SYNE2-209ENST00000553308 P01737 135 aa5.68□□□□□ -1.5
SYNE2-209ENST00000553308 CXCL1P09341 107 aa5.68□□□□□ -1.5
SYNE2-209ENST00000553308 AKR1C3P42330 323 aa5.68□□□□□ -1.5
SYNE2-209ENST00000553308 KRTAP10-8P60410 259 aa5.68□□□□□ -1.5
SYNE2-209ENST00000553308 SPANXN1Q5VSR9 72 aa5.68□□□□□ -1.5
SYNE2-209ENST00000553308 C15orf56Q8N910 161 aa5.68□□□□□ -1.5
SYNE2-209ENST00000553308 PRSS3P2Q8NHM4 247 aa5.68□□□□□ -1.5
SYNE2-209ENST00000553308 LYPD6BQ8NI32 183 aa5.68□□□□□ -1.5
SYNE2-209ENST00000553308 SSBP4Q9BWG4 385 aaPredicted RBP5.68□□□□□ -1.5
SYNE2-209ENST00000553308 MAP1LC3B2A6NCE7 125 aa5.67□□□□□ -1.5
SYNE2-209ENST00000553308 OR5AL1P0C617 328 aa5.67□□□□□ -1.5
SYNE2-209ENST00000553308 HIGD2BQ4VC39 106 aa5.67□□□□□ -1.5
SYNE2-209ENST00000553308 Q5BKY6 102 aa5.67□□□□□ -1.5
SYNE2-209ENST00000553308 CST9LP1Q5W188 147 aa5.67□□□□□ -1.5
SYNE2-209ENST00000553308 STPG4Q8N801 248 aa5.67□□□□□ -1.5
SYNE2-209ENST00000553308 INO80EQ8NBZ0 244 aaPredicted RBP5.67□□□□□ -1.5
SYNE2-209ENST00000553308 TMEM243Q9BU79 118 aa5.67□□□□□ -1.5
SYNE2-209ENST00000553308 MAP1LC3BQ9GZQ8 125 aa5.67□□□□□ -1.5
SYNE2-209ENST00000553308 A0A1B0GUV1 79 aa5.66□□□□□ -1.5
SYNE2-209ENST00000553308 M0QY20 66 aa5.66□□□□□ -1.5
SYNE2-209ENST00000553308 NDUFS6O75380 124 aaKnown RBP5.66□□□□□ -1.5
SYNE2-209ENST00000553308 MGPP08493 103 aa5.66□□□□□ -1.5
SYNE2-209ENST00000553308 SMIM17P0DL12 118 aa5.66□□□□□ -1.5
SYNE2-209ENST00000553308 GZMBP10144 247 aa5.66□□□□□ -1.5
SYNE2-209ENST00000553308 AKR1C8PQ5T2L2 129 aa5.66□□□□□ -1.5
SYNE2-209ENST00000553308 STOML3Q8TAV4 291 aa5.66□□□□□ -1.5
SYNE2-209ENST00000553308 AP1S3Q96PC3 154 aa5.66□□□□□ -1.5
SYNE2-209ENST00000553308 ALG5Q9Y673 324 aa5.66□□□□□ -1.5
SYNE2-209ENST00000553308 A0A096LNI7 61 aa5.65□□□□□ -1.5
SYNE2-209ENST00000553308 BORCS7-ASMTA0A0B4J1R7 106 aa5.65□□□□□ -1.5
SYNE2-209ENST00000553308 GAGE12HA6NDE8 117 aa5.65□□□□□ -1.5
SYNE2-209ENST00000553308 RPS10P46783 165 aaKnown RBP5.65□□□□□ -1.5
SYNE2-209ENST00000553308 FHITP49789 147 aa5.65□□□□□ -1.5
SYNE2-209ENST00000553308 SULT1A2P50226 295 aa5.65□□□□□ -1.5
SYNE2-209ENST00000553308 NKX2-5P52952 324 aaPredicted RBP5.65□□□□□ -1.5
SYNE2-209ENST00000553308 SUMO4Q6EEV6 95 aa5.65□□□□□ -1.5
SYNE2-209ENST00000553308 REG3GQ6UW15 175 aa5.65□□□□□ -1.5
SYNE2-209ENST00000553308 SPINK6Q6UWN8 80 aa5.65□□□□□ -1.5
SYNE2-209ENST00000553308 TCEAL7Q9BRU2 100 aa5.65□□□□□ -1.5
SYNE2-209ENST00000553308 IGKV3OR2-268A0A0C4DH90 116 aa5.64□□□□□ -1.51
SYNE2-209ENST00000553308 SCO2A0A1W2PP80 73 aa5.64□□□□□ -1.51
SYNE2-209ENST00000553308 PAGE4O60829 102 aa5.64□□□□□ -1.51
SYNE2-209ENST00000553308 DEFA1P59665 94 aa5.64□□□□□ -1.51
SYNE2-209ENST00000553308 MLST8Q9BVC4 326 aa5.64□□□□□ -1.51
SYNE2-209ENST00000553308 FXYD6-FXYD2A0A087WZ82 144 aa5.63□□□□□ -1.51
SYNE2-209ENST00000553308 H7C1H1 209 aa5.63□□□□□ -1.51
SYNE2-209ENST00000553308 UBE2L6O14933 153 aa5.63□□□□□ -1.51
SYNE2-209ENST00000553308 SRSF9Q13242 221 aaKnown RBP eCLIP5.63□□□□□ -1.51
SYNE2-209ENST00000553308 CFAP161Q6P656 301 aa5.63□□□□□ -1.51
SYNE2-209ENST00000553308 BAGE2Q86Y30 109 aa5.63□□□□□ -1.51
SYNE2-209ENST00000553308 GVQW2A0A096LPI5 108 aaPredicted RBP5.62□□□□□ -1.51
SYNE2-209ENST00000553308 S100A9P06702 114 aaKnown RBP5.62□□□□□ -1.51
SYNE2-209ENST00000553308 AMTP48728 403 aa5.62□□□□□ -1.51
SYNE2-209ENST00000553308 RASL11AQ6T310 242 aa5.62□□□□□ -1.51
SYNE2-209ENST00000553308 PGLYRP4Q96LB8 373 aa5.62□□□□□ -1.51
SYNE2-209ENST00000553308 TPPP3Q9BW30 176 aa5.62□□□□□ -1.51
SYNE2-209ENST00000553308 MED28Q9H204 178 aa5.62□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 67.5 ms