RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 TEX22C9J3V5 150 aa5.79□□□□□ -1.48
LIMA1-216ENST00000552909 GATA1P15976 413 aaPredicted RBP5.79□□□□□ -1.48
LIMA1-216ENST00000552909 PRR25Q96S07 402 aa5.79□□□□□ -1.48
LIMA1-216ENST00000552909 CNFNQ9BYD5 112 aa5.79□□□□□ -1.48
LIMA1-216ENST00000552909 ZNF815PA8K554 130 aa5.79□□□□□ -1.48
LIMA1-216ENST00000552909 PDE6HQ13956 83 aa5.79□□□□□ -1.48
LIMA1-216ENST00000552909 FAM159AQ6UWV7 190 aa5.79□□□□□ -1.48
LIMA1-216ENST00000552909 NDUFA11Q86Y39 141 aa5.79□□□□□ -1.48
LIMA1-216ENST00000552909 CITED2Q99967 270 aaPredicted RBP5.79□□□□□ -1.48
LIMA1-216ENST00000552909 M0QXV9 152 aa5.78□□□□□ -1.48
LIMA1-216ENST00000552909 MRPS12O15235 138 aaKnown RBP5.78□□□□□ -1.48
LIMA1-216ENST00000552909 SLC25A20O43772 301 aa5.78□□□□□ -1.48
LIMA1-216ENST00000552909 ORM1P02763 201 aa5.78□□□□□ -1.48
LIMA1-216ENST00000552909 CD7P09564 240 aa5.78□□□□□ -1.48
LIMA1-216ENST00000552909 PRADC1Q9BSG0 188 aa5.78□□□□□ -1.48
LIMA1-216ENST00000552909 IGKV2-40A0A087WW87 121 aaPredicted RBP5.77□□□□□ -1.49
LIMA1-216ENST00000552909 IGHV7-81A0A0B4J1V7 117 aa5.77□□□□□ -1.49
LIMA1-216ENST00000552909 ADARB2-AS1A8MUL3 147 aa5.77□□□□□ -1.49
LIMA1-216ENST00000552909 IGKV2D-40P01614 121 aaPredicted RBP5.77□□□□□ -1.49
LIMA1-216ENST00000552909 IGHG2P01859 326 aa5.77□□□□□ -1.49
LIMA1-216ENST00000552909 ZNF80P51504 273 aaPredicted RBP5.77□□□□□ -1.49
LIMA1-216ENST00000552909 I3L2K1 104 aa5.77□□□□□ -1.49
LIMA1-216ENST00000552909 IGKV1-17P01599 117 aa5.77□□□□□ -1.49
LIMA1-216ENST00000552909 IGHG4P01861 327 aa5.77□□□□□ -1.49
LIMA1-216ENST00000552909 NDPQ00604 133 aa5.77□□□□□ -1.49
LIMA1-216ENST00000552909 NSUN5P1Q3KNT7 163 aa5.77□□□□□ -1.49
LIMA1-216ENST00000552909 MEIG1Q5JSS6 88 aa5.77□□□□□ -1.49
LIMA1-216ENST00000552909 OR10J6PQ8NGY7 276 aa5.77□□□□□ -1.49
LIMA1-216ENST00000552909 FAM110DQ8TAY7 271 aaPredicted RBP5.77□□□□□ -1.49
LIMA1-216ENST00000552909 PLEKHB2Q96CS7 222 aa5.77□□□□□ -1.49
LIMA1-216ENST00000552909 RNF125Q96EQ8 232 aa5.77□□□□□ -1.49
LIMA1-216ENST00000552909 A0A1W2PRX2 142 aa5.76□□□□□ -1.49
LIMA1-216ENST00000552909 C9JAW5 83 aa5.76□□□□□ -1.49
LIMA1-216ENST00000552909 SCGB2A1O75556 95 aa5.76□□□□□ -1.49
LIMA1-216ENST00000552909 C10orf126Q8N4M7 172 aa5.76□□□□□ -1.49
LIMA1-216ENST00000552909 Q8TAT8 98 aa5.76□□□□□ -1.49
LIMA1-216ENST00000552909 ZNF575Q86XF7 245 aa5.76□□□□□ -1.49
LIMA1-216ENST00000552909 ZNF491Q8N8L2 437 aa5.76□□□□□ -1.49
LIMA1-216ENST00000552909 NRACQ8N912 160 aa5.76□□□□□ -1.49
LIMA1-216ENST00000552909 SCGB3A1Q96QR1 104 aa5.76□□□□□ -1.49
LIMA1-216ENST00000552909 TMEM126AQ9H061 195 aa5.76□□□□□ -1.49
LIMA1-216ENST00000552909 PRKDCP78527 4128 aaKnown RBP5.75□□□□□ -1.49
LIMA1-216ENST00000552909 TRAV8-4A0A0B4J246 113 aa5.75□□□□□ -1.49
LIMA1-216ENST00000552909 ATP6V0E1O15342 81 aa5.75□□□□□ -1.49
LIMA1-216ENST00000552909 Q6ZQT7 251 aa5.75□□□□□ -1.49
LIMA1-216ENST00000552909 C18orf65Q6ZTR6 163 aa5.75□□□□□ -1.49
LIMA1-216ENST00000552909 C15orf53Q8NAA6 179 aa5.75□□□□□ -1.49
LIMA1-216ENST00000552909 NEXN-AS1Q8NBZ9 246 aa5.75□□□□□ -1.49
LIMA1-216ENST00000552909 PRO1854Q9UHT4 67 aa5.75□□□□□ -1.49
LIMA1-216ENST00000552909 TGP01266 2768 aa5.74□□□□□ -1.49
LIMA1-216ENST00000552909 TRAV26-2A0A0B4J265 109 aa5.74□□□□□ -1.49
LIMA1-216ENST00000552909 G3V318 75 aa5.74□□□□□ -1.49
LIMA1-216ENST00000552909 CFC1BP0CG36 223 aa5.74□□□□□ -1.49
LIMA1-216ENST00000552909 CFC1P0CG37 223 aa5.74□□□□□ -1.49
LIMA1-216ENST00000552909 HLA-DMBP28068 263 aa5.74□□□□□ -1.49
LIMA1-216ENST00000552909 ID1P41134 155 aa5.74□□□□□ -1.49
LIMA1-216ENST00000552909 ECSCRQ19T08 205 aa5.74□□□□□ -1.49
LIMA1-216ENST00000552909 ORMDL2Q53FV1 153 aa5.74□□□□□ -1.49
LIMA1-216ENST00000552909 RASL10AQ92737 203 aa5.74□□□□□ -1.49
LIMA1-216ENST00000552909 MDFICQ9P1T7 246 aa5.74□□□□□ -1.49
LIMA1-216ENST00000552909 DNAH3Q8TD57 4116 aa5.74□□□□□ -1.49
LIMA1-216ENST00000552909 TRGV3P03979 118 aa5.74□□□□□ -1.49
LIMA1-216ENST00000552909 KHDC1LQ5JSQ8 128 aa5.74□□□□□ -1.49
LIMA1-216ENST00000552909 Q8N1Y9 231 aa5.74□□□□□ -1.49
LIMA1-216ENST00000552909 NTN5Q8WTR8 489 aaPredicted RBP5.74□□□□□ -1.49
LIMA1-216ENST00000552909 TOMM6Q96B49 74 aa5.74□□□□□ -1.49
LIMA1-216ENST00000552909 FANCD2OSQ96PS1 177 aa5.74□□□□□ -1.49
LIMA1-216ENST00000552909 ODF3Q96PU9 254 aa5.74□□□□□ -1.49
LIMA1-216ENST00000552909 KLK15Q9H2R5 256 aa5.74□□□□□ -1.49
LIMA1-216ENST00000552909 A0A0J9YY99 117 aa5.73□□□□□ -1.49
LIMA1-216ENST00000552909 IGF1P05019 195 aa5.73□□□□□ -1.49
LIMA1-216ENST00000552909 CFHR3Q02985 330 aa5.73□□□□□ -1.49
LIMA1-216ENST00000552909 SMIM2Q9BVW6 85 aa5.73□□□□□ -1.49
LIMA1-216ENST00000552909 PPDPFQ9H3Y8 114 aa5.73□□□□□ -1.49
LIMA1-216ENST00000552909 S4R3C0 116 aa5.73□□□□□ -1.49
LIMA1-216ENST00000552909 TRAV2A0A0B4J234 112 aa5.73□□□□□ -1.49
LIMA1-216ENST00000552909 K7EIM0 57 aa5.73□□□□□ -1.49
LIMA1-216ENST00000552909 IGHV3-30P01768 117 aa5.73□□□□□ -1.49
LIMA1-216ENST00000552909 IGHV3-30-5P0DP03 117 aa5.73□□□□□ -1.49
LIMA1-216ENST00000552909 RPL7P18124 248 aaKnown RBP5.73□□□□□ -1.49
LIMA1-216ENST00000552909 CRIP2P52943 208 aaPredicted RBP5.73□□□□□ -1.49
LIMA1-216ENST00000552909 HERVK_113P61574 105 aa5.73□□□□□ -1.49
LIMA1-216ENST00000552909 TRPT1Q86TN4 253 aaKnown RBP5.73□□□□□ -1.49
LIMA1-216ENST00000552909 KLHL30-AS1Q8NEE0 82 aa5.73□□□□□ -1.49
LIMA1-216ENST00000552909 BAALCQ8WXS3 180 aa5.73□□□□□ -1.49
LIMA1-216ENST00000552909 IGLV11-55A0A075B6I3 123 aa5.72□□□□□ -1.49
LIMA1-216ENST00000552909 TRAV41A0A0B4J266 112 aa5.72□□□□□ -1.49
LIMA1-216ENST00000552909 J3KRW8 73 aa5.72□□□□□ -1.49
LIMA1-216ENST00000552909 RPL13AP40429 203 aaKnown RBP5.72□□□□□ -1.49
LIMA1-216ENST00000552909 ERCC8Q13216 396 aa5.72□□□□□ -1.49
LIMA1-216ENST00000552909 ATXN8Q156A1 80 aa5.72□□□□□ -1.49
LIMA1-216ENST00000552909 MRPL23Q16540 153 aaKnown RBP5.72□□□□□ -1.49
LIMA1-216ENST00000552909 DUX3Q96PT4 197 aa5.72□□□□□ -1.49
LIMA1-216ENST00000552909 IGHV3-23P01764 117 aa5.72□□□□□ -1.49
LIMA1-216ENST00000552909 P0DMU3 169 aa5.72□□□□□ -1.49
LIMA1-216ENST00000552909 FAM231AP0DMU4 169 aa5.72□□□□□ -1.49
LIMA1-216ENST00000552909 FAM231CP0DMU5 169 aa5.72□□□□□ -1.49
LIMA1-216ENST00000552909 PSMB8P28062 276 aa5.72□□□□□ -1.49
LIMA1-216ENST00000552909 C19orf54Q5BKX5 351 aa5.72□□□□□ -1.49
LIMA1-216ENST00000552909 TEX49A0A1B0GTD5 131 aa5.71□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms