RNA–Protein interactions for RNA: ENST00000550891.4

SCN8A-206, Transcript of sodium voltage-gated channel alpha subunit 8, humanhuman

TSL 1 (best)

Gene SCN8A, Length 3,253 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN8A-206ENST00000550891 GTSCR1Q86UQ5 136 aa11.31□□□□□ -0.6
SCN8A-206ENST00000550891 TNFRSF18Q9Y5U5 241 aa11.31□□□□□ -0.6
SCN8A-206ENST00000550891 ZFP2Q6ZN57 461 aa11.31□□□□□ -0.6
SCN8A-206ENST00000550891 ERASQ7Z444 233 aa11.31□□□□□ -0.6
SCN8A-206ENST00000550891 ANK3Q12955 4377 aaKnown RBP11.3□□□□□ -0.6
SCN8A-206ENST00000550891 TRBV27A0A0K0K1C4 114 aa11.3□□□□□ -0.6
SCN8A-206ENST00000550891 NMUP48645 174 aa11.3□□□□□ -0.6
SCN8A-206ENST00000550891 C1orf158Q8N1D5 194 aa11.3□□□□□ -0.6
SCN8A-206ENST00000550891 TP53TG1Q9Y2A0 90 aa11.3□□□□□ -0.6
SCN8A-206ENST00000550891 JMJD1CQ15652 2540 aa11.3□□□□□ -0.6
SCN8A-206ENST00000550891 C11orf72Q8NBR9 251 aa11.3□□□□□ -0.6
SCN8A-206ENST00000550891 FLNBO75369 2602 aaKnown RBP11.29□□□□□ -0.6
SCN8A-206ENST00000550891 A0A087WX48 190 aa11.29□□□□□ -0.6
SCN8A-206ENST00000550891 TRGV1A0A0A0MS02 117 aa11.29□□□□□ -0.6
SCN8A-206ENST00000550891 MRPL35Q9NZE8 188 aaKnown RBP11.29□□□□□ -0.6
SCN8A-206ENST00000550891 CUBNO60494 3623 aa11.29□□□□□ -0.6
SCN8A-206ENST00000550891 COX8AP10176 69 aa11.29□□□□□ -0.6
SCN8A-206ENST00000550891 PTH2Q96A98 100 aa11.29□□□□□ -0.6
SCN8A-206ENST00000550891 HIVEP1P15822 2718 aa11.29□□□□□ -0.6
SCN8A-206ENST00000550891 I3L3M4 83 aa11.29□□□□□ -0.6
SCN8A-206ENST00000550891 AZU1P20160 251 aa11.29□□□□□ -0.6
SCN8A-206ENST00000550891 PLNP26678 52 aa11.29□□□□□ -0.6
SCN8A-206ENST00000550891 INSL3P51460 131 aa11.29□□□□□ -0.6
SCN8A-206ENST00000550891 ANKRD39Q53RE8 183 aa11.29□□□□□ -0.6
SCN8A-206ENST00000550891 MORN3Q6PF18 240 aaPredicted RBP11.29□□□□□ -0.6
SCN8A-206ENST00000550891 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP11.28□□□□□ -0.6
SCN8A-206ENST00000550891 C9orf66Q5T8R8 295 aa11.28□□□□□ -0.6
SCN8A-206ENST00000550891 CFAP126Q5VTH2 177 aa11.28□□□□□ -0.6
SCN8A-206ENST00000550891 TMEM263Q8WUH6 116 aaKnown RBP11.28□□□□□ -0.6
SCN8A-206ENST00000550891 HINT1P49773 126 aaPredicted RBP11.27□□□□□ -0.6
SCN8A-206ENST00000550891 CHTOPQ9Y3Y2 248 aaKnown RBP11.27□□□□□ -0.6
SCN8A-206ENST00000550891 TRAV12-1A0A0B4J245 112 aa11.27□□□□□ -0.61
SCN8A-206ENST00000550891 OR4C5Q8NGB2 326 aa11.27□□□□□ -0.61
SCN8A-206ENST00000550891 A0A1B0GV90 55 aa11.27□□□□□ -0.61
SCN8A-206ENST00000550891 F8VRH5 84 aa11.27□□□□□ -0.61
SCN8A-206ENST00000550891 RHOHQ15669 191 aa11.27□□□□□ -0.61
SCN8A-206ENST00000550891 ZC2HC1BQ5TFG8 222 aa11.27□□□□□ -0.61
SCN8A-206ENST00000550891 COL5A1-AS1Q5SY13 56 aa11.26□□□□□ -0.61
SCN8A-206ENST00000550891 RRN3P1Q2M238 152 aa11.26□□□□□ -0.61
SCN8A-206ENST00000550891 C19orf73Q9NVV2 129 aa11.26□□□□□ -0.61
SCN8A-206ENST00000550891 TMEM141Q96I45 108 aa11.25□□□□□ -0.61
SCN8A-206ENST00000550891 ZMAT4Q9H898 229 aa11.25□□□□□ -0.61
SCN8A-206ENST00000550891 TP73-AS1Q9UF72 201 aa11.25□□□□□ -0.61
SCN8A-206ENST00000550891 RPL39P62891 51 aaKnown RBP11.25□□□□□ -0.61
SCN8A-206ENST00000550891 RNASE8Q8TDE3 154 aaKnown RBP11.25□□□□□ -0.61
SCN8A-206ENST00000550891 BAALCQ8WXS3 180 aa11.25□□□□□ -0.61
SCN8A-206ENST00000550891 P0DMU3 169 aa11.24□□□□□ -0.61
SCN8A-206ENST00000550891 FAM231AP0DMU4 169 aa11.24□□□□□ -0.61
SCN8A-206ENST00000550891 FAM231CP0DMU5 169 aa11.24□□□□□ -0.61
SCN8A-206ENST00000550891 C16orf74Q96GX8 76 aa11.24□□□□□ -0.61
SCN8A-206ENST00000550891 F8P00451 2351 aa11.24□□□□□ -0.61
SCN8A-206ENST00000550891 RIPPLY3P57055 190 aa11.24□□□□□ -0.61
SCN8A-206ENST00000550891 NEXN-AS1Q8NBZ9 246 aa11.24□□□□□ -0.61
SCN8A-206ENST00000550891 EDA2RQ9HAV5 297 aa11.24□□□□□ -0.61
SCN8A-206ENST00000550891 RS1O15537 224 aa11.24□□□□□ -0.61
SCN8A-206ENST00000550891 C12orf54Q6X4T0 127 aa11.24□□□□□ -0.61
SCN8A-206ENST00000550891 TMEM97Q5BJF2 176 aa11.23□□□□□ -0.61
SCN8A-206ENST00000550891 NOP10Q9NPE3 64 aaKnown RBP11.23□□□□□ -0.61
SCN8A-206ENST00000550891 PRSS29PA6NIE9 313 aa11.23□□□□□ -0.61
SCN8A-206ENST00000550891 IGHV3-53P01767 116 aa11.23□□□□□ -0.61
SCN8A-206ENST00000550891 TIMM17AQ99595 171 aa11.23□□□□□ -0.61
SCN8A-206ENST00000550891 HHLA3Q9XRX5 114 aa11.22□□□□□ -0.61
SCN8A-206ENST00000550891 TRGV2A0A075B6R0 118 aa11.22□□□□□ -0.61
SCN8A-206ENST00000550891 TSHBP01222 138 aa11.22□□□□□ -0.61
SCN8A-206ENST00000550891 PMVKQ15126 192 aa11.22□□□□□ -0.61
SCN8A-206ENST00000550891 DNAJC30Q96LL9 226 aa11.22□□□□□ -0.61
SCN8A-206ENST00000550891 MPV17L2Q567V2 206 aa11.21□□□□□ -0.61
SCN8A-206ENST00000550891 UFSP1Q6NVU6 142 aa11.21□□□□□ -0.61
SCN8A-206ENST00000550891 Q6ZTI0 123 aa11.21□□□□□ -0.61
SCN8A-206ENST00000550891 CITED1Q99966 193 aa11.21□□□□□ -0.61
SCN8A-206ENST00000550891 GIG44P09565 113 aaPredicted RBP11.21□□□□□ -0.62
SCN8A-206ENST00000550891 PAPPA-AS1Q5QFB9 102 aa11.21□□□□□ -0.62
SCN8A-206ENST00000550891 IGIPA6NJ69 53 aa11.2□□□□□ -0.62
SCN8A-206ENST00000550891 BOD1L2Q8IYS8 172 aa11.2□□□□□ -0.62
SCN8A-206ENST00000550891 C20orf203Q8NBC4 194 aa11.2□□□□□ -0.62
SCN8A-206ENST00000550891 PCP2Q8IVA1 136 aa11.2□□□□□ -0.62
SCN8A-206ENST00000550891 COTL1Q14019 142 aa11.2□□□□□ -0.62
SCN8A-206ENST00000550891 Q6ZSN1 163 aa11.2□□□□□ -0.62
SCN8A-206ENST00000550891 DAZ2Q13117 558 aaKnown RBP11.19□□□□□ -0.62
SCN8A-206ENST00000550891 TRAV8-6A0A0B4J262 113 aa11.19□□□□□ -0.62
SCN8A-206ENST00000550891 TRAV4A0A0B4J268 109 aa11.19□□□□□ -0.62
SCN8A-206ENST00000550891 GAGE12BA1L429 117 aa11.19□□□□□ -0.62
SCN8A-206ENST00000550891 DLEU1O43261 78 aa11.19□□□□□ -0.62
SCN8A-206ENST00000550891 GAGE7O76087 117 aa11.19□□□□□ -0.62
SCN8A-206ENST00000550891 GAGE12FP0CL80 117 aa11.19□□□□□ -0.62
SCN8A-206ENST00000550891 GAGE12GP0CL81 117 aa11.19□□□□□ -0.62
SCN8A-206ENST00000550891 GAGE12IP0CL82 117 aa11.19□□□□□ -0.62
SCN8A-206ENST00000550891 EMP1P54849 157 aa11.19□□□□□ -0.62
SCN8A-206ENST00000550891 IL17DQ8TAD2 202 aa11.19□□□□□ -0.62
SCN8A-206ENST00000550891 PHLDA1Q8WV24 401 aaPredicted RBP11.19□□□□□ -0.62
SCN8A-206ENST00000550891 NIPBLQ6KC79 2804 aaeCLIP11.18□□□□□ -0.62
SCN8A-206ENST00000550891 RPL36AP83881 106 aaKnown RBP11.18□□□□□ -0.62
SCN8A-206ENST00000550891 OR11H2Q8NH07 326 aa11.18□□□□□ -0.62
SCN8A-206ENST00000550891 RPL36ALQ969Q0 106 aaKnown RBP11.18□□□□□ -0.62
SCN8A-206ENST00000550891 ZNF479Q96JC4 524 aa11.18□□□□□ -0.62
SCN8A-206ENST00000550891 FGF6P10767 208 aa11.18□□□□□ -0.62
SCN8A-206ENST00000550891 VCX2Q9H322 139 aa11.18□□□□□ -0.62
SCN8A-206ENST00000550891 HERVK_113P61574 105 aa11.17□□□□□ -0.62
SCN8A-206ENST00000550891 CST9LQ9H4G1 147 aa11.17□□□□□ -0.62
SCN8A-206ENST00000550891 ATRQ13535 2644 aa11.17□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 50.4 ms