RNA–Protein interactions for RNA: ENST00000550267.1

VPS29-208, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 810 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-208ENST00000550267 KRBOX1C9JBD0 128 aa6.58□□□□□ -1.36
VPS29-208ENST00000550267 M0R036 132 aa6.58□□□□□ -1.36
VPS29-208ENST00000550267 M0R381 172 aa6.58□□□□□ -1.36
VPS29-208ENST00000550267 PRR3P79522 188 aaKnown RBP6.58□□□□□ -1.36
VPS29-208ENST00000550267 DNLZQ5SXM8 178 aa6.58□□□□□ -1.36
VPS29-208ENST00000550267 LINC00269Q8N2A0 174 aa6.58□□□□□ -1.36
VPS29-208ENST00000550267 NEXN-AS1Q8NBZ9 246 aa6.58□□□□□ -1.36
VPS29-208ENST00000550267 RBM38Q9H0Z9 239 aaKnown RBP6.58□□□□□ -1.36
VPS29-208ENST00000550267 WFDC1Q9HC57 220 aa6.58□□□□□ -1.36
VPS29-208ENST00000550267 ARL2-SNX15V9GYD0 113 aa6.58□□□□□ -1.36
VPS29-208ENST00000550267 IGLV10-54A0A075B6I4 117 aa6.57□□□□□ -1.36
VPS29-208ENST00000550267 STAG3L2P0CL84 134 aa6.57□□□□□ -1.36
VPS29-208ENST00000550267 STAG3L3P0CL85 134 aa6.57□□□□□ -1.36
VPS29-208ENST00000550267 GCHFRP30047 84 aa6.57□□□□□ -1.36
VPS29-208ENST00000550267 CDC34P49427 236 aaPredicted RBP6.57□□□□□ -1.36
VPS29-208ENST00000550267 CRIP1P50238 77 aa6.57□□□□□ -1.36
VPS29-208ENST00000550267 RBX1P62877 108 aa6.57□□□□□ -1.36
VPS29-208ENST00000550267 NTM-AS1Q6ZSK4 140 aa6.57□□□□□ -1.36
VPS29-208ENST00000550267 OR10G8Q8NGN5 311 aa6.57□□□□□ -1.36
VPS29-208ENST00000550267 SUN5Q8TC36 379 aa6.57□□□□□ -1.36
VPS29-208ENST00000550267 PHLDA3Q9Y5J5 127 aa6.57□□□□□ -1.36
VPS29-208ENST00000550267 TRAV16A0A0A6YYK6 109 aaPredicted RBP6.56□□□□□ -1.36
VPS29-208ENST00000550267 TPT1P13693 172 aaKnown RBP6.56□□□□□ -1.36
VPS29-208ENST00000550267 RPL12P30050 165 aaKnown RBP6.56□□□□□ -1.36
VPS29-208ENST00000550267 PKIAP61925 76 aa6.56□□□□□ -1.36
VPS29-208ENST00000550267 GAGE6Q13070 117 aa6.56□□□□□ -1.36
VPS29-208ENST00000550267 PPP1R1CQ8WVI7 109 aa6.56□□□□□ -1.36
VPS29-208ENST00000550267 GTSF1Q8WW33 167 aa6.56□□□□□ -1.36
VPS29-208ENST00000550267 TMSB15BA0A087X1C1 80 aa6.55□□□□□ -1.36
VPS29-208ENST00000550267 MUC21A0A0G2JKD1 596 aa6.55□□□□□ -1.36
VPS29-208ENST00000550267 FAM240BA0A1B0GVZ2 78 aa6.55□□□□□ -1.36
VPS29-208ENST00000550267 SH2D1AO60880 128 aa6.55□□□□□ -1.36
VPS29-208ENST00000550267 CYCSP99999 105 aaKnown RBP6.55□□□□□ -1.36
VPS29-208ENST00000550267 ZFP82Q8N141 532 aa6.55□□□□□ -1.36
VPS29-208ENST00000550267 RAB24Q969Q5 203 aa6.55□□□□□ -1.36
VPS29-208ENST00000550267 H2BFSP57053 126 aa6.54□□□□□ -1.36
VPS29-208ENST00000550267 RAB4BP61018 213 aa6.54□□□□□ -1.36
VPS29-208ENST00000550267 REG3AQ06141 175 aa6.54□□□□□ -1.36
VPS29-208ENST00000550267 ZNF56Q15929 161 aa6.54□□□□□ -1.36
VPS29-208ENST00000550267 MAJINQ3KP22 176 aa6.54□□□□□ -1.36
VPS29-208ENST00000550267 PRR27Q6MZM9 219 aa6.54□□□□□ -1.36
VPS29-208ENST00000550267 REG3GQ6UW15 175 aa6.54□□□□□ -1.36
VPS29-208ENST00000550267 Q86TA4 180 aa6.54□□□□□ -1.36
VPS29-208ENST00000550267 LYPD6BQ8NI32 183 aa6.54□□□□□ -1.36
VPS29-208ENST00000550267 IGKV2-24A0A0C4DH68 120 aa6.53□□□□□ -1.36
VPS29-208ENST00000550267 MPC2O95563 127 aa6.53□□□□□ -1.36
VPS29-208ENST00000550267 RAB5CP51148 216 aa6.53□□□□□ -1.36
VPS29-208ENST00000550267 COX6A2Q02221 97 aa6.53□□□□□ -1.36
VPS29-208ENST00000550267 SPINK6Q6UWN8 80 aa6.53□□□□□ -1.36
VPS29-208ENST00000550267 SREK1IP1Q8N9Q2 155 aaPredicted RBP6.53□□□□□ -1.36
VPS29-208ENST00000550267 DERL1Q9BUN8 251 aa6.53□□□□□ -1.36
VPS29-208ENST00000550267 TMEM167BQ9NRX6 74 aa6.53□□□□□ -1.36
VPS29-208ENST00000550267 TRBV6-1A0A0K0K1D8 114 aa6.52□□□□□ -1.37
VPS29-208ENST00000550267 IFNA7P01567 189 aa6.52□□□□□ -1.37
VPS29-208ENST00000550267 TMEM97Q5BJF2 176 aa6.52□□□□□ -1.37
VPS29-208ENST00000550267 STPG4Q8N801 248 aa6.52□□□□□ -1.37
VPS29-208ENST00000550267 TRBV25-1A0A075B6N4 114 aa6.51□□□□□ -1.37
VPS29-208ENST00000550267 A0A1W2PRE2 83 aa6.51□□□□□ -1.37
VPS29-208ENST00000550267 PEX7O00628 323 aa6.51□□□□□ -1.37
VPS29-208ENST00000550267 NDUFS6O75380 124 aaKnown RBP6.51□□□□□ -1.37
VPS29-208ENST00000550267 CXorf1O96002 111 aa6.51□□□□□ -1.37
VPS29-208ENST00000550267 PET100P0DJ07 73 aa6.51□□□□□ -1.37
VPS29-208ENST00000550267 FAM162BQ5T6X4 162 aa6.51□□□□□ -1.37
VPS29-208ENST00000550267 MZT2BQ6NZ67 158 aa6.51□□□□□ -1.37
VPS29-208ENST00000550267 C20orf203Q8NBC4 194 aa6.51□□□□□ -1.37
VPS29-208ENST00000550267 PRSS3P2Q8NHM4 247 aa6.51□□□□□ -1.37
VPS29-208ENST00000550267 GFRA4Q9GZZ7 299 aa6.51□□□□□ -1.37
VPS29-208ENST00000550267 VAX2Q9UIW0 290 aa6.51□□□□□ -1.37
VPS29-208ENST00000550267 IGLV4-60A0A075B6I1 120 aa6.5□□□□□ -1.37
VPS29-208ENST00000550267 TRAV8-4A0A0B4J246 113 aa6.5□□□□□ -1.37
VPS29-208ENST00000550267 P01737 135 aa6.5□□□□□ -1.37
VPS29-208ENST00000550267 UBE2G2P60604 165 aa6.5□□□□□ -1.37
VPS29-208ENST00000550267 SRSF9Q13242 221 aaKnown RBP eCLIP6.5□□□□□ -1.37
VPS29-208ENST00000550267 IQCJQ1A5X6 159 aa6.5□□□□□ -1.37
VPS29-208ENST00000550267 COX8CQ7Z4L0 72 aa6.5□□□□□ -1.37
VPS29-208ENST00000550267 C15orf56Q8N910 161 aa6.5□□□□□ -1.37
VPS29-208ENST00000550267 OR10AG1Q8NH19 301 aa6.5□□□□□ -1.37
VPS29-208ENST00000550267 CCDC32Q9BV29 185 aa6.5□□□□□ -1.37
VPS29-208ENST00000550267 IGHV1-24A0A0C4DH33 117 aa6.49□□□□□ -1.37
VPS29-208ENST00000550267 F5H697 171 aa6.49□□□□□ -1.37
VPS29-208ENST00000550267 ATP6V0CP27449 155 aa6.49□□□□□ -1.37
VPS29-208ENST00000550267 RPS10P46783 165 aaKnown RBP6.49□□□□□ -1.37
VPS29-208ENST00000550267 ZNF674Q2M3X9 581 aa6.49□□□□□ -1.37
VPS29-208ENST00000550267 HIGD2BQ4VC39 106 aa6.49□□□□□ -1.37
VPS29-208ENST00000550267 MLST8Q9BVC4 326 aa6.49□□□□□ -1.37
VPS29-208ENST00000550267 ACTR3CQ9C0K3 210 aaPredicted RBP6.49□□□□□ -1.37
VPS29-208ENST00000550267 ZFP30Q9Y2G7 519 aa6.49□□□□□ -1.37
VPS29-208ENST00000550267 A0A096LNI7 61 aa6.48□□□□□ -1.37
VPS29-208ENST00000550267 MUC21A0A140T8X8 626 aa6.48□□□□□ -1.37
VPS29-208ENST00000550267 GZMBP10144 247 aa6.48□□□□□ -1.37
VPS29-208ENST00000550267 DEFA3P59666 94 aa6.48□□□□□ -1.37
VPS29-208ENST00000550267 PSMG3Q9BT73 122 aaPredicted RBP6.48□□□□□ -1.37
VPS29-208ENST00000550267 ZNF471Q9BX82 626 aaPredicted RBP6.48□□□□□ -1.37
VPS29-208ENST00000550267 MUC2Q02817 5179 aa6.47□□□□□ -1.37
VPS29-208ENST00000550267 GAGE12HA6NDE8 117 aa6.47□□□□□ -1.37
VPS29-208ENST00000550267 H7C1H1 209 aa6.47□□□□□ -1.37
VPS29-208ENST00000550267 MBP02144 154 aa6.47□□□□□ -1.37
VPS29-208ENST00000550267 SSTP61278 116 aa6.47□□□□□ -1.37
VPS29-208ENST00000550267 INO80EQ8NBZ0 244 aaPredicted RBP6.47□□□□□ -1.37
VPS29-208ENST00000550267 ENKURQ8TC29 256 aa6.47□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms