RNA–Protein interactions for RNA: ENST00000547394.6

CUX1-212, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,878 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-212ENST00000547394 AZU1P20160 251 aa8.12□□□□□ -1.11
CUX1-212ENST00000547394 HHLA3Q9XRX5 114 aa8.12□□□□□ -1.11
CUX1-212ENST00000547394 K7EP13 123 aa8.12□□□□□ -1.11
CUX1-212ENST00000547394 IGKCP01834 107 aa8.12□□□□□ -1.11
CUX1-212ENST00000547394 MRPL16Q9NX20 251 aaKnown RBP8.12□□□□□ -1.11
CUX1-212ENST00000547394 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP8.11□□□□□ -1.11
CUX1-212ENST00000547394 MED14OSP0DP75 135 aa8.11□□□□□ -1.11
CUX1-212ENST00000547394 NAA38Q9BRA0 125 aaKnown RBP8.11□□□□□ -1.11
CUX1-212ENST00000547394 TP53TG1Q9Y2A0 90 aa8.11□□□□□ -1.11
CUX1-212ENST00000547394 TRAV8-6A0A0B4J262 113 aa8.11□□□□□ -1.11
CUX1-212ENST00000547394 INAFM1C9JVW0 142 aa8.11□□□□□ -1.11
CUX1-212ENST00000547394 Q6ZSN1 163 aa8.11□□□□□ -1.11
CUX1-212ENST00000547394 AMMECR1LQ6DCA0 310 aa8.1□□□□□ -1.11
CUX1-212ENST00000547394 ODF3Q96PU9 254 aa8.1□□□□□ -1.11
CUX1-212ENST00000547394 M0QY20 66 aa8.1□□□□□ -1.11
CUX1-212ENST00000547394 RNASE1P07998 156 aaKnown RBP8.1□□□□□ -1.11
CUX1-212ENST00000547394 RPL35AP18077 110 aaKnown RBP8.1□□□□□ -1.11
CUX1-212ENST00000547394 KRTAP10-3P60369 221 aa8.1□□□□□ -1.11
CUX1-212ENST00000547394 SPATA3Q8NHX4 192 aa8.1□□□□□ -1.11
CUX1-212ENST00000547394 DPM2O94777 84 aa8.09□□□□□ -1.11
CUX1-212ENST00000547394 C12orf54Q6X4T0 127 aa8.09□□□□□ -1.11
CUX1-212ENST00000547394 DEFB125Q8N687 156 aa8.09□□□□□ -1.11
CUX1-212ENST00000547394 SYT8Q8NBV8 401 aa8.09□□□□□ -1.11
CUX1-212ENST00000547394 SPAG8Q99932 426 aaPredicted RBP8.09□□□□□ -1.11
CUX1-212ENST00000547394 C20orf78Q9BR46 151 aa8.09□□□□□ -1.11
CUX1-212ENST00000547394 ATP5LO75964 103 aa8.09□□□□□ -1.11
CUX1-212ENST00000547394 FHL3Q13643 280 aa8.09□□□□□ -1.11
CUX1-212ENST00000547394 ZFP2Q6ZN57 461 aa8.09□□□□□ -1.11
CUX1-212ENST00000547394 ZNF418Q8TF45 676 aaPredicted RBP8.09□□□□□ -1.11
CUX1-212ENST00000547394 TSSC4Q9Y5U2 329 aaPredicted RBP8.09□□□□□ -1.11
CUX1-212ENST00000547394 TSHBP01222 138 aa8.08□□□□□ -1.12
CUX1-212ENST00000547394 ORMDL2Q53FV1 153 aa8.08□□□□□ -1.12
CUX1-212ENST00000547394 STHQ8IWL8 128 aa8.08□□□□□ -1.12
CUX1-212ENST00000547394 MAPKAPK5-AS1Q8N8E1 139 aa8.08□□□□□ -1.12
CUX1-212ENST00000547394 BAALCQ8WXS3 180 aa8.08□□□□□ -1.12
CUX1-212ENST00000547394 TOMM6Q96B49 74 aa8.08□□□□□ -1.12
CUX1-212ENST00000547394 IGHV3-38A0A0C4DH36 116 aa8.08□□□□□ -1.12
CUX1-212ENST00000547394 IGHV3-53P01767 116 aa8.08□□□□□ -1.12
CUX1-212ENST00000547394 POLR2KP53803 58 aaKnown RBP8.08□□□□□ -1.12
CUX1-212ENST00000547394 RNASE13Q5GAN3 156 aaKnown RBP8.08□□□□□ -1.12
CUX1-212ENST00000547394 A0A087WX48 190 aa8.08□□□□□ -1.12
CUX1-212ENST00000547394 PRSS29PA6NIE9 313 aa8.08□□□□□ -1.12
CUX1-212ENST00000547394 HILS1P60008 231 aa8.08□□□□□ -1.12
CUX1-212ENST00000547394 CEMP1Q6PRD7 247 aaPredicted RBP8.08□□□□□ -1.12
CUX1-212ENST00000547394 CHTOPQ9Y3Y2 248 aaKnown RBP8.08□□□□□ -1.12
CUX1-212ENST00000547394 TRGV11A0A075B6L2 103 aa8.07□□□□□ -1.12
CUX1-212ENST00000547394 OR11H12B2RN74 326 aa8.07□□□□□ -1.12
CUX1-212ENST00000547394 BOD1L2Q8IYS8 172 aa8.07□□□□□ -1.12
CUX1-212ENST00000547394 ZMAT4Q9H898 229 aa8.07□□□□□ -1.12
CUX1-212ENST00000547394 ADARB2-AS1A8MUL3 147 aa8.07□□□□□ -1.12
CUX1-212ENST00000547394 KIR2DL4Q99706 377 aa8.07□□□□□ -1.12
CUX1-212ENST00000547394 CST9LQ9H4G1 147 aa8.07□□□□□ -1.12
CUX1-212ENST00000547394 CFAP161Q6P656 301 aa8.06□□□□□ -1.12
CUX1-212ENST00000547394 PHLDA1Q8WV24 401 aaPredicted RBP8.06□□□□□ -1.12
CUX1-212ENST00000547394 JMJD8Q96S16 334 aa8.06□□□□□ -1.12
CUX1-212ENST00000547394 VPS25Q9BRG1 176 aa8.06□□□□□ -1.12
CUX1-212ENST00000547394 STAB1Q9NY15 2570 aa8.06□□□□□ -1.12
CUX1-212ENST00000547394 C1orf158Q8N1D5 194 aa8.06□□□□□ -1.12
CUX1-212ENST00000547394 TEX29Q8N6K0 151 aa8.06□□□□□ -1.12
CUX1-212ENST00000547394 NEXN-AS1Q8NBZ9 246 aa8.06□□□□□ -1.12
CUX1-212ENST00000547394 RAB37Q96AX2 223 aa8.06□□□□□ -1.12
CUX1-212ENST00000547394 VCYO14598 125 aa8.05□□□□□ -1.12
CUX1-212ENST00000547394 POM121L12Q8N7R1 296 aa8.05□□□□□ -1.12
CUX1-212ENST00000547394 CYSLTR1Q9Y271 337 aa8.05□□□□□ -1.12
CUX1-212ENST00000547394 INSP01308 110 aa8.05□□□□□ -1.12
CUX1-212ENST00000547394 OCIAD2Q56VL3 154 aa8.05□□□□□ -1.12
CUX1-212ENST00000547394 TMEM97Q5BJF2 176 aa8.05□□□□□ -1.12
CUX1-212ENST00000547394 C11orf72Q8NBR9 251 aa8.04□□□□□ -1.12
CUX1-212ENST00000547394 IGHV3-64A0A075B6Q5 118 aa8.04□□□□□ -1.12
CUX1-212ENST00000547394 TRGV1A0A0A0MS02 117 aa8.04□□□□□ -1.12
CUX1-212ENST00000547394 F8VRH5 84 aa8.04□□□□□ -1.12
CUX1-212ENST00000547394 H7C1H1 209 aa8.04□□□□□ -1.12
CUX1-212ENST00000547394 COTL1Q14019 142 aa8.04□□□□□ -1.12
CUX1-212ENST00000547394 PKD1L1Q8TDX9 2849 aa8.04□□□□□ -1.12
CUX1-212ENST00000547394 GAGE12BA1L429 117 aa8.04□□□□□ -1.12
CUX1-212ENST00000547394 GCSHP23434 173 aa8.04□□□□□ -1.12
CUX1-212ENST00000547394 CFAP126Q5VTH2 177 aa8.04□□□□□ -1.12
CUX1-212ENST00000547394 MAST4O15021 2626 aa8.03□□□□□ -1.12
CUX1-212ENST00000547394 C11orf86A6NJI1 115 aa8.03□□□□□ -1.12
CUX1-212ENST00000547394 K7ERJ3 54 aa8.03□□□□□ -1.12
CUX1-212ENST00000547394 M0R2P5 195 aa8.03□□□□□ -1.12
CUX1-212ENST00000547394 RIPPLY3P57055 190 aa8.03□□□□□ -1.12
CUX1-212ENST00000547394 TRBV25-1A0A075B6N4 114 aa8.03□□□□□ -1.12
CUX1-212ENST00000547394 TRBV27A0A0K0K1C4 114 aa8.03□□□□□ -1.12
CUX1-212ENST00000547394 IGIPA6NJ69 53 aa8.03□□□□□ -1.12
CUX1-212ENST00000547394 A6NJY4 79 aa8.03□□□□□ -1.12
CUX1-212ENST00000547394 ZNF415Q09FC8 603 aa8.03□□□□□ -1.12
CUX1-212ENST00000547394 Q6ZTI0 123 aa8.03□□□□□ -1.12
CUX1-212ENST00000547394 C16orf95Q9H693 158 aa8.03□□□□□ -1.12
CUX1-212ENST00000547394 PPP1R17O96001 155 aa8.02□□□□□ -1.13
CUX1-212ENST00000547394 TRPT1Q86TN4 253 aaKnown RBP8.02□□□□□ -1.13
CUX1-212ENST00000547394 A8MTW9 85 aa8.02□□□□□ -1.13
CUX1-212ENST00000547394 GIG44P09565 113 aaPredicted RBP8.02□□□□□ -1.13
CUX1-212ENST00000547394 FXYD2P54710 66 aa8.02□□□□□ -1.13
CUX1-212ENST00000547394 ZNF479Q96JC4 524 aa8.02□□□□□ -1.13
CUX1-212ENST00000547394 IGKV2D-29A0A075B6S2 120 aaPredicted RBP8.01□□□□□ -1.13
CUX1-212ENST00000547394 IGKV2-29A2NJV5 120 aaPredicted RBP8.01□□□□□ -1.13
CUX1-212ENST00000547394 PF4P02776 101 aa8.01□□□□□ -1.13
CUX1-212ENST00000547394 CHAC1Q9BUX1 264 aa8.01□□□□□ -1.13
CUX1-212ENST00000547394 NOP10Q9NPE3 64 aaKnown RBP8.01□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 87.1 ms