RNA–Protein interactions for RNA: ENST00000545694.1

SYNE1-239, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 3

Gene SYNE1, Length 526 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-239ENST00000545694 RBMY1EA6NEQ0 496 aaKnown RBP4.52□□□□□ -1.69
SYNE1-239ENST00000545694 SMKR1H3BMG3 65 aa4.52□□□□□ -1.69
SYNE1-239ENST00000545694 NCR2O95944 276 aa4.52□□□□□ -1.69
SYNE1-239ENST00000545694 RBMY1DP0C7P1 496 aaKnown RBP4.52□□□□□ -1.69
SYNE1-239ENST00000545694 LINC00315P59091 139 aa4.52□□□□□ -1.69
SYNE1-239ENST00000545694 DEFA6Q01524 100 aa4.52□□□□□ -1.69
SYNE1-239ENST00000545694 GTSCR1Q86UQ5 136 aa4.52□□□□□ -1.69
SYNE1-239ENST00000545694 RASL10AQ92737 203 aa4.52□□□□□ -1.69
SYNE1-239ENST00000545694 IFI27L1Q96BM0 104 aa4.52□□□□□ -1.69
SYNE1-239ENST00000545694 KIR2DL4Q99706 377 aa4.52□□□□□ -1.69
SYNE1-239ENST00000545694 MIEN1Q9BRT3 115 aa4.52□□□□□ -1.69
SYNE1-239ENST00000545694 TMEM208Q9BTX3 173 aa4.52□□□□□ -1.69
SYNE1-239ENST00000545694 MDFICQ9P1T7 246 aa4.52□□□□□ -1.69
SYNE1-239ENST00000545694 ZMAT5Q9UDW3 170 aaKnown RBP4.52□□□□□ -1.69
SYNE1-239ENST00000545694 CUBNO60494 3623 aa4.52□□□□□ -1.69
SYNE1-239ENST00000545694 A0A096LNJ9 63 aa4.51□□□□□ -1.69
SYNE1-239ENST00000545694 TRAV12-1A0A0B4J245 112 aa4.51□□□□□ -1.69
SYNE1-239ENST00000545694 TRBV27A0A0K0K1C4 114 aa4.51□□□□□ -1.69
SYNE1-239ENST00000545694 F5H697 171 aa4.51□□□□□ -1.69
SYNE1-239ENST00000545694 CRYGDP07320 174 aa4.51□□□□□ -1.69
SYNE1-239ENST00000545694 MGPP08493 103 aa4.51□□□□□ -1.69
SYNE1-239ENST00000545694 NPSP0C0P6 89 aa4.51□□□□□ -1.69
SYNE1-239ENST00000545694 POLR2KP53803 58 aaKnown RBP4.51□□□□□ -1.69
SYNE1-239ENST00000545694 SPATA45Q537H7 98 aa4.51□□□□□ -1.69
SYNE1-239ENST00000545694 ZNF705AQ6ZN79 300 aaPredicted RBP4.51□□□□□ -1.69
SYNE1-239ENST00000545694 WFDC9Q8NEX5 89 aa4.51□□□□□ -1.69
SYNE1-239ENST00000545694 TMEM263Q8WUH6 116 aaKnown RBP4.51□□□□□ -1.69
SYNE1-239ENST00000545694 DNAJC30Q96LL9 226 aa4.51□□□□□ -1.69
SYNE1-239ENST00000545694 PMCHL2Q9BQD1 86 aa4.51□□□□□ -1.69
SYNE1-239ENST00000545694 UQCR10Q9UDW1 63 aa4.51□□□□□ -1.69
SYNE1-239ENST00000545694 SELENOKQ9Y6D0 94 aa4.51□□□□□ -1.69
SYNE1-239ENST00000545694 SMIM9A6NGZ8 99 aa4.5□□□□□ -1.69
SYNE1-239ENST00000545694 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP4.5□□□□□ -1.69
SYNE1-239ENST00000545694 M0QY20 66 aa4.5□□□□□ -1.69
SYNE1-239ENST00000545694 NUDT3O95989 172 aa4.5□□□□□ -1.69
SYNE1-239ENST00000545694 KRTAP10-3P60369 221 aa4.5□□□□□ -1.69
SYNE1-239ENST00000545694 DAZ2Q13117 558 aaKnown RBP4.5□□□□□ -1.69
SYNE1-239ENST00000545694 RHOHQ15669 191 aa4.5□□□□□ -1.69
SYNE1-239ENST00000545694 ZNF56Q15929 161 aa4.5□□□□□ -1.69
SYNE1-239ENST00000545694 PAPPA-AS1Q5QFB9 102 aa4.5□□□□□ -1.69
SYNE1-239ENST00000545694 SUMO4Q6EEV6 95 aa4.5□□□□□ -1.69
SYNE1-239ENST00000545694 Q6ZSN1 163 aa4.5□□□□□ -1.69
SYNE1-239ENST00000545694 C11orf72Q8NBR9 251 aa4.5□□□□□ -1.69
SYNE1-239ENST00000545694 TMEM158Q8WZ71 300 aa4.5□□□□□ -1.69
SYNE1-239ENST00000545694 TOMM6Q96B49 74 aa4.5□□□□□ -1.69
SYNE1-239ENST00000545694 C16orf74Q96GX8 76 aa4.5□□□□□ -1.69
SYNE1-239ENST00000545694 TENM1Q9UKZ4 2725 aa4.5□□□□□ -1.69
SYNE1-239ENST00000545694 VWFP04275 2813 aa4.49□□□□□ -1.69
SYNE1-239ENST00000545694 TRAV26-2A0A0B4J265 109 aa4.49□□□□□ -1.69
SYNE1-239ENST00000545694 SDHAF1A6NFY7 115 aa4.49□□□□□ -1.69
SYNE1-239ENST00000545694 LINC00587B1AMM8 73 aa4.49□□□□□ -1.69
SYNE1-239ENST00000545694 RS1O15537 224 aa4.49□□□□□ -1.69
SYNE1-239ENST00000545694 RBMY1A1P0DJD3 496 aaKnown RBP4.49□□□□□ -1.69
SYNE1-239ENST00000545694 RBMY1CP0DJD4 496 aa4.49□□□□□ -1.69
SYNE1-239ENST00000545694 IGLC3P0DOY3 106 aa4.49□□□□□ -1.69
SYNE1-239ENST00000545694 GATA1P15976 413 aaPredicted RBP4.49□□□□□ -1.69
SYNE1-239ENST00000545694 PLNP26678 52 aa4.49□□□□□ -1.69
SYNE1-239ENST00000545694 CRYBA4P53673 196 aa4.49□□□□□ -1.69
SYNE1-239ENST00000545694 RIPPLY3P57055 190 aa4.49□□□□□ -1.69
SYNE1-239ENST00000545694 FXYD7P58549 80 aa4.49□□□□□ -1.69
SYNE1-239ENST00000545694 SMAGPQ0VAQ4 97 aa4.49□□□□□ -1.69
SYNE1-239ENST00000545694 RBMY1FQ15415 496 aaKnown RBP4.49□□□□□ -1.69
SYNE1-239ENST00000545694 RNF151Q2KHN1 245 aa4.49□□□□□ -1.69
SYNE1-239ENST00000545694 ERASQ7Z444 233 aa4.49□□□□□ -1.69
SYNE1-239ENST00000545694 KIR2DL5BQ8NHK3 375 aa4.49□□□□□ -1.69
SYNE1-239ENST00000545694 IL17DQ8TAD2 202 aa4.49□□□□□ -1.69
SYNE1-239ENST00000545694 RNASE8Q8TDE3 154 aaKnown RBP4.49□□□□□ -1.69
SYNE1-239ENST00000545694 TMEM141Q96I45 108 aa4.49□□□□□ -1.69
SYNE1-239ENST00000545694 CSTL1Q9H114 145 aa4.49□□□□□ -1.69
SYNE1-239ENST00000545694 PRO1933Q9H354 126 aa4.49□□□□□ -1.69
SYNE1-239ENST00000545694 XCL2Q9UBD3 114 aa4.49□□□□□ -1.69
SYNE1-239ENST00000545694 CYSLTR1Q9Y271 337 aa4.49□□□□□ -1.69
SYNE1-239ENST00000545694 PAM16Q9Y3D7 125 aa4.49□□□□□ -1.69
SYNE1-239ENST00000545694 A0A087WWL8 130 aa4.48□□□□□ -1.69
SYNE1-239ENST00000545694 TRAV4A0A0B4J268 109 aa4.48□□□□□ -1.69
SYNE1-239ENST00000545694 TRBV10-1A0A0K0K1A3 114 aa4.48□□□□□ -1.69
SYNE1-239ENST00000545694 I3L3M4 83 aa4.48□□□□□ -1.69
SYNE1-239ENST00000545694 IGHV3-53P01767 116 aa4.48□□□□□ -1.69
SYNE1-239ENST00000545694 PRSS1P07477 247 aa4.48□□□□□ -1.69
SYNE1-239ENST00000545694 RRN3P1Q2M238 152 aa4.48□□□□□ -1.69
SYNE1-239ENST00000545694 FAM74A4Q5TZK3 123 aa4.48□□□□□ -1.69
SYNE1-239ENST00000545694 CFAP126Q5VTH2 177 aa4.48□□□□□ -1.69
SYNE1-239ENST00000545694 UFSP1Q6NVU6 142 aa4.48□□□□□ -1.69
SYNE1-239ENST00000545694 C2orf66Q6UXQ4 117 aa4.48□□□□□ -1.69
SYNE1-239ENST00000545694 Q6ZN92 141 aa4.48□□□□□ -1.69
SYNE1-239ENST00000545694 LINC00173Q6ZV60 143 aa4.48□□□□□ -1.69
SYNE1-239ENST00000545694 C1orf158Q8N1D5 194 aa4.48□□□□□ -1.69
SYNE1-239ENST00000545694 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP4.48□□□□□ -1.69
SYNE1-239ENST00000545694 RPL39LQ96EH5 51 aaKnown RBP4.48□□□□□ -1.69
SYNE1-239ENST00000545694 SCGB3A1Q96QR1 104 aa4.48□□□□□ -1.69
SYNE1-239ENST00000545694 TIMM17AQ99595 171 aa4.48□□□□□ -1.69
SYNE1-239ENST00000545694 OVOL2Q9BRP0 275 aa4.48□□□□□ -1.69
SYNE1-239ENST00000545694 ZMAT4Q9H898 229 aa4.48□□□□□ -1.69
SYNE1-239ENST00000545694 MRPS16Q9Y3D3 137 aaKnown RBP4.48□□□□□ -1.69
SYNE1-239ENST00000545694 TNFRSF18Q9Y5U5 241 aa4.48□□□□□ -1.69
SYNE1-239ENST00000545694 A0A087WX48 190 aa4.47□□□□□ -1.69
SYNE1-239ENST00000545694 M0R143 59 aa4.47□□□□□ -1.69
SYNE1-239ENST00000545694 SIVA1O15304 175 aa4.47□□□□□ -1.69
SYNE1-239ENST00000545694 DLEU1O43261 78 aa4.47□□□□□ -1.69
SYNE1-239ENST00000545694 DPM2O94777 84 aa4.47□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms