RNA–Protein interactions for RNA: ENST00000545686.6

TDP1-204, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 1 (best)

Gene TDP1, Length 2,488 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-204ENST00000545686 Q8N1Y9 231 aa6.48□□□□□ -1.37
TDP1-204ENST00000545686 PYGO1Q9Y3Y4 419 aa6.48□□□□□ -1.37
TDP1-204ENST00000545686 IGLV4-3A0A075B6K6 122 aa6.48□□□□□ -1.37
TDP1-204ENST00000545686 TMEM89A2RUT3 159 aa6.48□□□□□ -1.37
TDP1-204ENST00000545686 EIF4EBP3O60516 100 aaPredicted RBP6.48□□□□□ -1.37
TDP1-204ENST00000545686 ATXN8Q156A1 80 aa6.48□□□□□ -1.37
TDP1-204ENST00000545686 TRGV11A0A075B6L2 103 aa6.47□□□□□ -1.37
TDP1-204ENST00000545686 TRAV2A0A0B4J234 112 aa6.47□□□□□ -1.37
TDP1-204ENST00000545686 C9JAW5 83 aa6.47□□□□□ -1.37
TDP1-204ENST00000545686 BLCAPP62952 87 aa6.47□□□□□ -1.37
TDP1-204ENST00000545686 ZFHX3Q15911 3703 aa6.47□□□□□ -1.37
TDP1-204ENST00000545686 IGHV4-61A0A0C4DH41 118 aa6.47□□□□□ -1.37
TDP1-204ENST00000545686 A0A0J9YXY3 114 aa6.47□□□□□ -1.37
TDP1-204ENST00000545686 TRBV30A0A0K0K1B3 111 aa6.47□□□□□ -1.37
TDP1-204ENST00000545686 K7EQG2 157 aa6.47□□□□□ -1.37
TDP1-204ENST00000545686 PSMB8P28062 276 aa6.47□□□□□ -1.37
TDP1-204ENST00000545686 MUSTN1Q8IVN3 82 aa6.47□□□□□ -1.37
TDP1-204ENST00000545686 SVEP1Q4LDE5 3571 aa6.46□□□□□ -1.38
TDP1-204ENST00000545686 NACAE9PAV3 2078 aa6.46□□□□□ -1.38
TDP1-204ENST00000545686 TRAV26-1A0A087WT03 109 aa6.46□□□□□ -1.38
TDP1-204ENST00000545686 EDN2P20800 178 aa6.46□□□□□ -1.38
TDP1-204ENST00000545686 RPL13AP40429 203 aaKnown RBP6.46□□□□□ -1.38
TDP1-204ENST00000545686 MRPS36P82909 103 aaKnown RBP6.46□□□□□ -1.38
TDP1-204ENST00000545686 C10orf105Q8TEF2 133 aa6.46□□□□□ -1.38
TDP1-204ENST00000545686 DEFB104AQ8WTQ1 72 aa6.46□□□□□ -1.38
TDP1-204ENST00000545686 RAX2Q96IS3 184 aa6.46□□□□□ -1.38
TDP1-204ENST00000545686 OPRPNQ99935 248 aaPredicted RBP6.46□□□□□ -1.38
TDP1-204ENST00000545686 A0A0J9YXV3 536 aa6.45□□□□□ -1.38
TDP1-204ENST00000545686 TGFAP01135 160 aa6.45□□□□□ -1.38
TDP1-204ENST00000545686 LINC01620Q4KN68 170 aa6.45□□□□□ -1.38
TDP1-204ENST00000545686 ZFAND6Q6FIF0 208 aa6.45□□□□□ -1.38
TDP1-204ENST00000545686 CITED1Q99966 193 aa6.45□□□□□ -1.38
TDP1-204ENST00000545686 TIMM21Q9BVV7 248 aa6.45□□□□□ -1.38
TDP1-204ENST00000545686 SPANXDQ9BXN6 97 aa6.45□□□□□ -1.38
TDP1-204ENST00000545686 SPANXCQ9NY87 97 aa6.45□□□□□ -1.38
TDP1-204ENST00000545686 SPTAN1Q13813 2472 aaKnown RBP6.45□□□□□ -1.38
TDP1-204ENST00000545686 TRAV12-2A0A075B6T6 113 aa6.45□□□□□ -1.38
TDP1-204ENST00000545686 IGHV3-30-3P0DP02 117 aa6.45□□□□□ -1.38
TDP1-204ENST00000545686 WFDC12Q8WWY7 111 aa6.45□□□□□ -1.38
TDP1-204ENST00000545686 RNF183Q96D59 192 aa6.45□□□□□ -1.38
TDP1-204ENST00000545686 ATRXP46100 2492 aa6.45□□□□□ -1.38
TDP1-204ENST00000545686 Q1RN00 199 aa6.44□□□□□ -1.38
TDP1-204ENST00000545686 LITAFQ99732 161 aa6.44□□□□□ -1.38
TDP1-204ENST00000545686 AKAP6Q13023 2319 aa6.44□□□□□ -1.38
TDP1-204ENST00000545686 DOPEY2Q9Y3R5 2298 aa6.44□□□□□ -1.38
TDP1-204ENST00000545686 TRBV10-2A0A0K0K1G8 114 aa6.44□□□□□ -1.38
TDP1-204ENST00000545686 MSMBP08118 114 aa6.44□□□□□ -1.38
TDP1-204ENST00000545686 CD28P10747 220 aa6.44□□□□□ -1.38
TDP1-204ENST00000545686 SPINK13Q1W4C9 94 aa6.44□□□□□ -1.38
TDP1-204ENST00000545686 PIK3CD-AS1Q5SR53 167 aa6.44□□□□□ -1.38
TDP1-204ENST00000545686 TEX29Q8N6K0 151 aa6.44□□□□□ -1.38
TDP1-204ENST00000545686 IGHV1-58A0A0C4DH39 117 aa6.43□□□□□ -1.38
TDP1-204ENST00000545686 IGF2RP11717 2491 aa6.43□□□□□ -1.38
TDP1-204ENST00000545686 IGHV3-64A0A075B6Q5 118 aa6.43□□□□□ -1.38
TDP1-204ENST00000545686 TINCRA0A1B0GVN0 87 aa6.43□□□□□ -1.38
TDP1-204ENST00000545686 C19orf84I3L1E1 186 aa6.43□□□□□ -1.38
TDP1-204ENST00000545686 Q6Q795 121 aa6.43□□□□□ -1.38
TDP1-204ENST00000545686 CLUHP3Q96NS8 147 aa6.43□□□□□ -1.38
TDP1-204ENST00000545686 ANAPC13Q9BS18 74 aa6.43□□□□□ -1.38
TDP1-204ENST00000545686 SPANXA1Q9NS26 97 aa6.43□□□□□ -1.38
TDP1-204ENST00000545686 H7C2G1 150 aa6.42□□□□□ -1.38
TDP1-204ENST00000545686 TRIAP1O43715 76 aa6.42□□□□□ -1.38
TDP1-204ENST00000545686 TIMM17BO60830 172 aa6.42□□□□□ -1.38
TDP1-204ENST00000545686 IGKV3-20P01619 116 aa6.42□□□□□ -1.38
TDP1-204ENST00000545686 MIAQ16674 131 aa6.42□□□□□ -1.38
TDP1-204ENST00000545686 Q5PR19 223 aa6.42□□□□□ -1.38
TDP1-204ENST00000545686 NTN5Q8WTR8 489 aaPredicted RBP6.42□□□□□ -1.38
TDP1-204ENST00000545686 FAM104AQ969W3 186 aa6.42□□□□□ -1.38
TDP1-204ENST00000545686 CCL19Q99731 98 aa6.42□□□□□ -1.38
TDP1-204ENST00000545686 YAE1D1Q9NRH1 226 aa6.42□□□□□ -1.38
TDP1-204ENST00000545686 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP6.42□□□□□ -1.382e-9■■■■■ 31.2
TDP1-204ENST00000545686 A8MTW9 85 aa6.42□□□□□ -1.38
TDP1-204ENST00000545686 H3BT86 120 aa6.42□□□□□ -1.38
TDP1-204ENST00000545686 SNCGO76070 127 aa6.42□□□□□ -1.38
TDP1-204ENST00000545686 GATA3P23771 443 aa6.42□□□□□ -1.38
TDP1-204ENST00000545686 ICOSQ9Y6W8 199 aa6.42□□□□□ -1.38
TDP1-204ENST00000545686 CELSR1Q9NYQ6 3014 aa6.41□□□□□ -1.38
TDP1-204ENST00000545686 H3BMM0 161 aa6.41□□□□□ -1.38
TDP1-204ENST00000545686 ELANEP08246 267 aa6.41□□□□□ -1.38
TDP1-204ENST00000545686 COX6CP09669 75 aa6.41□□□□□ -1.38
TDP1-204ENST00000545686 UBE2WQ96B02 151 aa6.41□□□□□ -1.38
TDP1-204ENST00000545686 VSIG2Q96IQ7 327 aa6.41□□□□□ -1.38
TDP1-204ENST00000545686 SPXQ9BT56 116 aa6.41□□□□□ -1.38
TDP1-204ENST00000545686 NDUFA12Q9UI09 145 aa6.41□□□□□ -1.38
TDP1-204ENST00000545686 IFITM1P13164 125 aa6.41□□□□□ -1.38
TDP1-204ENST00000545686 TMEM95Q3KNT9 176 aa6.41□□□□□ -1.38
TDP1-204ENST00000545686 TNFRSF18Q9Y5U5 241 aa6.41□□□□□ -1.38
TDP1-204ENST00000545686 TRAV8-4A0A0B4J246 113 aa6.4□□□□□ -1.38
TDP1-204ENST00000545686 GAGE2BQ13066 116 aa6.4□□□□□ -1.38
TDP1-204ENST00000545686 MRPL23Q16540 153 aaKnown RBP6.4□□□□□ -1.38
TDP1-204ENST00000545686 GAGE2EQ4V326 116 aa6.4□□□□□ -1.38
TDP1-204ENST00000545686 GAGE2DQ9UEU5 116 aa6.4□□□□□ -1.38
TDP1-204ENST00000545686 IGHV4-30-2A0A087WSY4 118 aa6.4□□□□□ -1.39
TDP1-204ENST00000545686 B4DSR2 109 aa6.4□□□□□ -1.39
TDP1-204ENST00000545686 SVIPQ8NHG7 77 aa6.4□□□□□ -1.39
TDP1-204ENST00000545686 UBE2D4Q9Y2X8 147 aa6.4□□□□□ -1.39
TDP1-204ENST00000545686 TRAV8-3A0A0A6YYJ7 113 aa6.39□□□□□ -1.39
TDP1-204ENST00000545686 FAM240AA0A1B0GVK7 77 aa6.39□□□□□ -1.39
TDP1-204ENST00000545686 ZNF415Q09FC8 603 aa6.39□□□□□ -1.39
TDP1-204ENST00000545686 TMEM61Q8N0U2 210 aa6.39□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms