RNA–Protein interactions for RNA: ENST00000540797.5

USP3-204, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2 BASIC

Gene USP3, Length 5,474 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-204ENST00000540797 HIST2H2BDQ6DRA6 164 aa10.66□□□□□ -0.7
USP3-204ENST00000540797 ODF3Q96PU9 254 aa10.66□□□□□ -0.7
USP3-204ENST00000540797 SIGMAR1Q99720 223 aa10.66□□□□□ -0.7
USP3-204ENST00000540797 NACAE9PAV3 2078 aa10.66□□□□□ -0.7
USP3-204ENST00000540797 SMIM9A6NGZ8 99 aa10.66□□□□□ -0.7
USP3-204ENST00000540797 INAFM2P0DMQ5 153 aa10.65□□□□□ -0.7
USP3-204ENST00000540797 FAM222AQ5U5X8 452 aa10.65□□□□□ -0.7
USP3-204ENST00000540797 Q6ZTI0 123 aa10.65□□□□□ -0.7
USP3-204ENST00000540797 ABCA2Q9BZC7 2435 aa10.65□□□□□ -0.7
USP3-204ENST00000540797 LINC00482Q8N8I6 264 aa10.65□□□□□ -0.7
USP3-204ENST00000540797 COX7B2Q8TF08 81 aa10.65□□□□□ -0.7
USP3-204ENST00000540797 SPATA25Q9BR10 227 aa10.65□□□□□ -0.7
USP3-204ENST00000540797 TLN1Q9Y490 2541 aaKnown RBP10.65□□□□□ -0.7
USP3-204ENST00000540797 PSMB8P28062 276 aa10.65□□□□□ -0.7
USP3-204ENST00000540797 TRBV10-1A0A0K0K1A3 114 aa10.65□□□□□ -0.71
USP3-204ENST00000540797 NDUFA1O15239 70 aa10.65□□□□□ -0.71
USP3-204ENST00000540797 TP53TG3Q9ULZ0 132 aa10.64□□□□□ -0.71
USP3-204ENST00000540797 LRP4O75096 1905 aa10.64□□□□□ -0.71
USP3-204ENST00000540797 TRAV26-1A0A087WT03 109 aa10.64□□□□□ -0.71
USP3-204ENST00000540797 ETDCA0A1B0GVM5 59 aa10.64□□□□□ -0.71
USP3-204ENST00000540797 GAGE2BQ13066 116 aa10.64□□□□□ -0.71
USP3-204ENST00000540797 PRSS47A8MTI9 375 aa10.64□□□□□ -0.71
USP3-204ENST00000540797 PRRC2AP48634 2157 aaKnown RBP10.64□□□□□ -0.71
USP3-204ENST00000540797 ZNF80P51504 273 aaPredicted RBP10.64□□□□□ -0.71
USP3-204ENST00000540797 UBE2V1Q13404 147 aa10.64□□□□□ -0.71
USP3-204ENST00000540797 C19orf71A6NCJ1 209 aa10.64□□□□□ -0.71
USP3-204ENST00000540797 Q8N6K4 173 aa10.64□□□□□ -0.71
USP3-204ENST00000540797 ZFAND3Q9H8U3 227 aa10.64□□□□□ -0.71
USP3-204ENST00000540797 COX11Q9Y6N1 276 aa10.64□□□□□ -0.71
USP3-204ENST00000540797 DLEU1O43261 78 aa10.63□□□□□ -0.71
USP3-204ENST00000540797 LYRM9A8MSI8 78 aa10.63□□□□□ -0.71
USP3-204ENST00000540797 ARHGAP21Q5T5U3 1957 aa10.63□□□□□ -0.71
USP3-204ENST00000540797 SIVA1O15304 175 aa10.63□□□□□ -0.71
USP3-204ENST00000540797 MAJINQ3KP22 176 aa10.63□□□□□ -0.71
USP3-204ENST00000540797 C20orf173Q96LM9 149 aa10.63□□□□□ -0.71
USP3-204ENST00000540797 BVES-AS1Q5T3Y7 98 aa10.63□□□□□ -0.71
USP3-204ENST00000540797 C9orf118A6NHY6 69 aa10.62□□□□□ -0.71
USP3-204ENST00000540797 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP10.62□□□□□ -0.71
USP3-204ENST00000540797 FAM110AQ9BQ89 295 aa10.62□□□□□ -0.71
USP3-204ENST00000540797 SRCAPQ6ZRS2 3230 aa10.62□□□□□ -0.71
USP3-204ENST00000540797 PCP4P48539 62 aa10.62□□□□□ -0.71
USP3-204ENST00000540797 ZNF124Q15973 351 aa10.62□□□□□ -0.71
USP3-204ENST00000540797 DEFB105AQ8NG35 78 aa10.62□□□□□ -0.71
USP3-204ENST00000540797 MBD6Q96DN6 1003 aa10.62□□□□□ -0.71
USP3-204ENST00000540797 DSCR8Q96T75 97 aa10.62□□□□□ -0.71
USP3-204ENST00000540797 SMR3AQ99954 134 aa10.62□□□□□ -0.71
USP3-204ENST00000540797 ZNF295-AS1Q8N0V1 137 aa10.61□□□□□ -0.71
USP3-204ENST00000540797 TOMM6Q96B49 74 aa10.61□□□□□ -0.71
USP3-204ENST00000540797 PCP2Q8IVA1 136 aa10.61□□□□□ -0.71
USP3-204ENST00000540797 DEFB131BA0A096LNP1 70 aa10.61□□□□□ -0.71
USP3-204ENST00000540797 SPAG11BQ08648 103 aa10.61□□□□□ -0.71
USP3-204ENST00000540797 RBMY1FQ15415 496 aaKnown RBP10.61□□□□□ -0.71
USP3-204ENST00000540797 ANAPC13Q9BS18 74 aa10.61□□□□□ -0.71
USP3-204ENST00000540797 TIMM17AQ99595 171 aa10.61□□□□□ -0.71
USP3-204ENST00000540797 LINC00173Q6ZV60 143 aa10.61□□□□□ -0.71
USP3-204ENST00000540797 IGHV4-4A0A075B6R2 117 aa10.6□□□□□ -0.71
USP3-204ENST00000540797 CCL25O15444 150 aa10.6□□□□□ -0.71
USP3-204ENST00000540797 AVPP01185 164 aa10.6□□□□□ -0.71
USP3-204ENST00000540797 K7ERJ3 54 aa10.6□□□□□ -0.71
USP3-204ENST00000540797 Q6ZS46 218 aa10.6□□□□□ -0.71
USP3-204ENST00000540797 BAALCQ8WXS3 180 aa10.6□□□□□ -0.71
USP3-204ENST00000540797 SND1-IT1Q9HBX3 110 aa10.6□□□□□ -0.71
USP3-204ENST00000540797 COL5A1P20908 1838 aaPredicted RBP10.59□□□□□ -0.71
USP3-204ENST00000540797 IFITM1P13164 125 aa10.59□□□□□ -0.71
USP3-204ENST00000540797 C20orf203Q8NBC4 194 aa10.59□□□□□ -0.71
USP3-204ENST00000540797 RNF183Q96D59 192 aa10.59□□□□□ -0.71
USP3-204ENST00000540797 ZFAND6Q6FIF0 208 aa10.59□□□□□ -0.71
USP3-204ENST00000540797 C18orf65Q6ZTR6 163 aa10.59□□□□□ -0.71
USP3-204ENST00000540797 CARD19Q96LW7 228 aa10.59□□□□□ -0.71
USP3-204ENST00000540797 P0DMU3 169 aa10.58□□□□□ -0.72
USP3-204ENST00000540797 FAM231AP0DMU4 169 aa10.58□□□□□ -0.72
USP3-204ENST00000540797 FAM231CP0DMU5 169 aa10.58□□□□□ -0.72
USP3-204ENST00000540797 MIFP14174 115 aa10.58□□□□□ -0.72
USP3-204ENST00000540797 UBL5Q9BZL1 73 aa10.58□□□□□ -0.72
USP3-204ENST00000540797 TRAV12-1A0A0B4J245 112 aa10.58□□□□□ -0.72
USP3-204ENST00000540797 CFC1BP0CG36 223 aa10.58□□□□□ -0.72
USP3-204ENST00000540797 CFC1P0CG37 223 aa10.58□□□□□ -0.72
USP3-204ENST00000540797 CXCL5P42830 114 aa10.58□□□□□ -0.72
USP3-204ENST00000540797 C12orf74Q32Q52 190 aa10.58□□□□□ -0.72
USP3-204ENST00000540797 HAMPP81172 84 aa10.57□□□□□ -0.72
USP3-204ENST00000540797 NUPR1O60356 82 aa10.57□□□□□ -0.72
USP3-204ENST00000540797 GAGE12HA6NDE8 117 aa10.57□□□□□ -0.72
USP3-204ENST00000540797 LINC01545Q5VT33 79 aa10.57□□□□□ -0.72
USP3-204ENST00000540797 LINC00322Q6ZN03 302 aaPredicted RBP10.57□□□□□ -0.72
USP3-204ENST00000540797 IGLV1-40P01703 118 aa10.56□□□□□ -0.72
USP3-204ENST00000540797 COA6Q5JTJ3 125 aaKnown RBP10.56□□□□□ -0.72
USP3-204ENST00000540797 GDF5OSQ5U4N7 250 aa10.56□□□□□ -0.72
USP3-204ENST00000540797 FRMD6-AS1P0C7T7 363 aa10.55□□□□□ -0.72
USP3-204ENST00000540797 SORL1Q92673 2214 aa10.55□□□□□ -0.72
USP3-204ENST00000540797 A0A1W2PPR1 153 aa10.55□□□□□ -0.72
USP3-204ENST00000540797 UBE2AP49459 152 aa10.55□□□□□ -0.72
USP3-204ENST00000540797 CEMP1Q6PRD7 247 aaPredicted RBP10.55□□□□□ -0.72
USP3-204ENST00000540797 GTSF1LQ9H1H1 148 aa10.55□□□□□ -0.72
USP3-204ENST00000540797 TINCRA0A1B0GVN0 87 aa10.55□□□□□ -0.72
USP3-204ENST00000540797 IGLV2-8P01709 118 aa10.55□□□□□ -0.72
USP3-204ENST00000540797 MUSTN1Q8IVN3 82 aa10.54□□□□□ -0.72
USP3-204ENST00000540797 OPRPNQ99935 248 aaPredicted RBP10.54□□□□□ -0.72
USP3-204ENST00000540797 ORMDL1Q9P0S3 153 aa10.54□□□□□ -0.72
USP3-204ENST00000540797 C14orf177Q52M58 125 aa10.54□□□□□ -0.72
USP3-204ENST00000540797 ANKRD39Q53RE8 183 aa10.54□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 185.9 ms