RNA–Protein interactions for RNA: ENST00000540747.1

YBX3-209, Transcript of Y-box binding protein 3, humanhuman

TSL 5

Gene YBX3, Length 548 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-209ENST00000540747 LINC01556Q5JQF7 62 aa4.86□□□□□ -1.63
YBX3-209ENST00000540747 BLNKQ8WV28 456 aa4.86□□□□□ -1.63
YBX3-209ENST00000540747 SAMD10Q9BYL1 202 aa4.86□□□□□ -1.63
YBX3-209ENST00000540747 RNASE7Q9H1E1 156 aaKnown RBP4.86□□□□□ -1.63
YBX3-209ENST00000540747 ZNF492Q9P255 531 aa4.86□□□□□ -1.63
YBX3-209ENST00000540747 NAT8BQ9UHF3 227 aa4.86□□□□□ -1.63
YBX3-209ENST00000540747 NAGKQ9UJ70 344 aa4.86□□□□□ -1.63
YBX3-209ENST00000540747 EPDR1Q9UM22 224 aa4.86□□□□□ -1.63
YBX3-209ENST00000540747 LRP2P98164 4655 aa4.86□□□□□ -1.63
YBX3-209ENST00000540747 IGKV2-40A0A087WW87 121 aaPredicted RBP4.85□□□□□ -1.63
YBX3-209ENST00000540747 SMIM27A0A1W2PRY6 76 aa4.85□□□□□ -1.63
YBX3-209ENST00000540747 GRIFINA4D1Z8 144 aa4.85□□□□□ -1.63
YBX3-209ENST00000540747 IGKV2D-40P01614 121 aaPredicted RBP4.85□□□□□ -1.63
YBX3-209ENST00000540747 IGLV2-8P01709 118 aa4.85□□□□□ -1.63
YBX3-209ENST00000540747 HLA-DQA1P01909 254 aa4.85□□□□□ -1.63
YBX3-209ENST00000540747 APCSP02743 223 aa4.85□□□□□ -1.63
YBX3-209ENST00000540747 ORM1P02763 201 aa4.85□□□□□ -1.63
YBX3-209ENST00000540747 GPX1P07203 203 aa4.85□□□□□ -1.63
YBX3-209ENST00000540747 WFDC2Q14508 124 aa4.85□□□□□ -1.63
YBX3-209ENST00000540747 TMEM183BQ1AE95 376 aa4.85□□□□□ -1.63
YBX3-209ENST00000540747 SERTAD4-AS1Q5TG53 156 aa4.85□□□□□ -1.63
YBX3-209ENST00000540747 FAM231DQ6ZW35 169 aa4.85□□□□□ -1.63
YBX3-209ENST00000540747 LINC00528Q8N1L1 170 aa4.85□□□□□ -1.63
YBX3-209ENST00000540747 EXOC3-AS1Q8N2X6 119 aa4.85□□□□□ -1.63
YBX3-209ENST00000540747 FXYD5Q96DB9 178 aa4.85□□□□□ -1.63
YBX3-209ENST00000540747 DAZAP1Q96EP5 407 aaKnown RBP4.85□□□□□ -1.63
YBX3-209ENST00000540747 RNF213Q63HN8 5207 aa4.85□□□□□ -1.63
YBX3-209ENST00000540747 TNXBP22105 4242 aa4.84□□□□□ -1.63
YBX3-209ENST00000540747 TRAV34A0A0B4J273 112 aa4.84□□□□□ -1.63
YBX3-209ENST00000540747 TRGV4A0A0C4DH28 118 aa4.84□□□□□ -1.63
YBX3-209ENST00000540747 IGHV3-38A0A0C4DH36 116 aa4.84□□□□□ -1.63
YBX3-209ENST00000540747 LOC100131303A0A0U1RQF7 123 aa4.84□□□□□ -1.63
YBX3-209ENST00000540747 PLA2G1BP04054 148 aaKnown RBP4.84□□□□□ -1.63
YBX3-209ENST00000540747 ESDP10768 282 aa4.84□□□□□ -1.63
YBX3-209ENST00000540747 TDRG1Q3Y452 100 aa4.84□□□□□ -1.63
YBX3-209ENST00000540747 OR10J3Q5JRS4 329 aa4.84□□□□□ -1.63
YBX3-209ENST00000540747 FAM162BQ5T6X4 162 aa4.84□□□□□ -1.63
YBX3-209ENST00000540747 Q6AWC8 147 aa4.84□□□□□ -1.63
YBX3-209ENST00000540747 MRPL54Q6P161 138 aaKnown RBP4.84□□□□□ -1.63
YBX3-209ENST00000540747 RASL11AQ6T310 242 aa4.84□□□□□ -1.63
YBX3-209ENST00000540747 TMEM136Q6ZRR5 245 aa4.84□□□□□ -1.63
YBX3-209ENST00000540747 ZNF664Q8N3J9 261 aa4.84□□□□□ -1.63
YBX3-209ENST00000540747 C5orf17Q8NAS9 161 aa4.84□□□□□ -1.63
YBX3-209ENST00000540747 NUDT10Q8NFP7 164 aa4.84□□□□□ -1.63
YBX3-209ENST00000540747 DEFB104AQ8WTQ1 72 aa4.84□□□□□ -1.63
YBX3-209ENST00000540747 SMIM12Q96EX1 92 aa4.84□□□□□ -1.63
YBX3-209ENST00000540747 NUDT11Q96G61 164 aa4.84□□□□□ -1.63
YBX3-209ENST00000540747 RPH3ALQ9UNE2 315 aa4.84□□□□□ -1.63
YBX3-209ENST00000540747 TRAV4A0A0B4J268 109 aa4.83□□□□□ -1.64
YBX3-209ENST00000540747 A8MWL6 223 aa4.83□□□□□ -1.64
YBX3-209ENST00000540747 NUPR1O60356 82 aa4.83□□□□□ -1.64
YBX3-209ENST00000540747 SERF1AO75920 110 aa4.83□□□□□ -1.64
YBX3-209ENST00000540747 GATA1P15976 413 aaPredicted RBP4.83□□□□□ -1.64
YBX3-209ENST00000540747 ZNF138P52744 262 aa4.83□□□□□ -1.64
YBX3-209ENST00000540747 GNG5P63218 68 aa4.83□□□□□ -1.64
YBX3-209ENST00000540747 KIAA1644Q3SXP7 199 aa4.83□□□□□ -1.64
YBX3-209ENST00000540747 TMEM78Q5T7P6 136 aa4.83□□□□□ -1.64
YBX3-209ENST00000540747 PRR27Q6MZM9 219 aa4.83□□□□□ -1.64
YBX3-209ENST00000540747 SH2D6Q7Z4S9 175 aa4.83□□□□□ -1.64
YBX3-209ENST00000540747 NHLRC2Q8NBF2 726 aa4.83□□□□□ -1.64
YBX3-209ENST00000540747 Q8TAT8 98 aa4.83□□□□□ -1.64
YBX3-209ENST00000540747 TSKUQ8WUA8 353 aa4.83□□□□□ -1.64
YBX3-209ENST00000540747 FMC1Q96HJ9 113 aa4.83□□□□□ -1.64
YBX3-209ENST00000540747 C14orf144Q96I85 54 aa4.83□□□□□ -1.64
YBX3-209ENST00000540747 LINC00479Q96M42 142 aa4.83□□□□□ -1.64
YBX3-209ENST00000540747 SPXQ9BT56 116 aa4.83□□□□□ -1.64
YBX3-209ENST00000540747 OTORQ9NRC9 128 aa4.83□□□□□ -1.64
YBX3-209ENST00000540747 RBAKDNA6NC62 111 aa4.82□□□□□ -1.64
YBX3-209ENST00000540747 K7EQM0 130 aa4.82□□□□□ -1.64
YBX3-209ENST00000540747 PSCAO43653 123 aa4.82□□□□□ -1.64
YBX3-209ENST00000540747 OXTP01178 125 aa4.82□□□□□ -1.64
YBX3-209ENST00000540747 P01737 135 aa4.82□□□□□ -1.64
YBX3-209ENST00000540747 LAGE3Q14657 143 aa4.82□□□□□ -1.64
YBX3-209ENST00000540747 LBHQ53QV2 105 aaPredicted RBP4.82□□□□□ -1.64
YBX3-209ENST00000540747 MUC21Q5SSG8 566 aa4.82□□□□□ -1.64
YBX3-209ENST00000540747 BORCS7Q96B45 105 aa4.82□□□□□ -1.64
YBX3-209ENST00000540747 AAMDCQ9H7C9 122 aa4.82□□□□□ -1.64
YBX3-209ENST00000540747 TRGV11A0A075B6L2 103 aa4.81□□□□□ -1.64
YBX3-209ENST00000540747 IGHV3-16A0A0C4DH30 117 aa4.81□□□□□ -1.64
YBX3-209ENST00000540747 TCRAP04437 139 aa4.81□□□□□ -1.64
YBX3-209ENST00000540747 PMCHP20382 165 aa4.81□□□□□ -1.64
YBX3-209ENST00000540747 AMTP48728 403 aa4.81□□□□□ -1.64
YBX3-209ENST00000540747 KRTDAPP60985 99 aa4.81□□□□□ -1.64
YBX3-209ENST00000540747 CT83Q5H943 113 aa4.81□□□□□ -1.64
YBX3-209ENST00000540747 SCXQ7RTU7 201 aa4.81□□□□□ -1.64
YBX3-209ENST00000540747 ATP5L2Q7Z4Y8 100 aa4.81□□□□□ -1.64
YBX3-209ENST00000540747 NUP35Q8NFH5 326 aa4.81□□□□□ -1.64
YBX3-209ENST00000540747 VAMP8Q9BV40 100 aa4.81□□□□□ -1.64
YBX3-209ENST00000540747 RPP21Q9H633 154 aaKnown RBP4.81□□□□□ -1.64
YBX3-209ENST00000540747 Q9HAA7 133 aa4.81□□□□□ -1.64
YBX3-209ENST00000540747 LENEPQ9Y5L5 61 aa4.81□□□□□ -1.64
YBX3-209ENST00000540747 TRBV6-1A0A0K0K1D8 114 aa4.8□□□□□ -1.64
YBX3-209ENST00000540747 DIRC3C9JPN6 131 aa4.8□□□□□ -1.64
YBX3-209ENST00000540747 M0R143 59 aa4.8□□□□□ -1.64
YBX3-209ENST00000540747 M0R2P5 195 aa4.8□□□□□ -1.64
YBX3-209ENST00000540747 LTAP01374 205 aa4.8□□□□□ -1.64
YBX3-209ENST00000540747 LINC00694P0DN24 101 aa4.8□□□□□ -1.64
YBX3-209ENST00000540747 NTF3P20783 257 aa4.8□□□□□ -1.64
YBX3-209ENST00000540747 CSN1S1P47710 185 aa4.8□□□□□ -1.64
YBX3-209ENST00000540747 CAMPP49913 170 aa4.8□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms