RNA–Protein interactions for RNA: ENST00000532339.1

CD44-235, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-235ENST00000532339 OR51H1Q8NH63 302 aa1.78□□□□□ -2.12
CD44-235ENST00000532339 HIST1H2BAQ96A08 127 aa1.78□□□□□ -2.12
CD44-235ENST00000532339 TVP23CQ96ET8 276 aa1.78□□□□□ -2.12
CD44-235ENST00000532339 ACY3Q96HD9 319 aa1.78□□□□□ -2.12
CD44-235ENST00000532339 PACRGQ96M98 296 aaPredicted RBP1.78□□□□□ -2.12
CD44-235ENST00000532339 NKIRAS1Q9NYS0 192 aa1.78□□□□□ -2.12
CD44-235ENST00000532339 A0A1B0GVG6 124 aa1.77□□□□□ -2.13
CD44-235ENST00000532339 SLC25A20O43772 301 aa1.77□□□□□ -2.13
CD44-235ENST00000532339 TCRBP04435 133 aa1.77□□□□□ -2.13
CD44-235ENST00000532339 OR13C7P0DN81 318 aa1.77□□□□□ -2.13
CD44-235ENST00000532339 ORM2P19652 201 aa1.77□□□□□ -2.13
CD44-235ENST00000532339 SPRR2EP22531 72 aa1.77□□□□□ -2.13
CD44-235ENST00000532339 SPRR2BP35325 72 aa1.77□□□□□ -2.13
CD44-235ENST00000532339 SPRR2AP35326 72 aa1.77□□□□□ -2.13
CD44-235ENST00000532339 CDC34P49427 236 aaPredicted RBP1.77□□□□□ -2.13
CD44-235ENST00000532339 H2BFSP57053 126 aa1.77□□□□□ -2.13
CD44-235ENST00000532339 WT1-ASQ06250 92 aa1.77□□□□□ -2.13
CD44-235ENST00000532339 PYDC2Q56P42 97 aa1.77□□□□□ -2.13
CD44-235ENST00000532339 TNFAIP8L3Q5GJ75 292 aa1.77□□□□□ -2.13
CD44-235ENST00000532339 SCGB1D4Q6XE38 83 aa1.77□□□□□ -2.13
CD44-235ENST00000532339 OR51A2Q8NGJ7 313 aa1.77□□□□□ -2.13
CD44-235ENST00000532339 GNPDA2Q8TDQ7 276 aa1.77□□□□□ -2.13
CD44-235ENST00000532339 CYGBQ8WWM9 190 aa1.77□□□□□ -2.13
CD44-235ENST00000532339 ASB13Q8WXK3 278 aa1.77□□□□□ -2.13
CD44-235ENST00000532339 GPER1Q99527 375 aa1.77□□□□□ -2.13
CD44-235ENST00000532339 TBX5Q99593 518 aa1.77□□□□□ -2.13
CD44-235ENST00000532339 CGREF1Q99674 301 aa1.77□□□□□ -2.13
CD44-235ENST00000532339 TTTY10Q9BZA0 68 aa1.77□□□□□ -2.13
CD44-235ENST00000532339 RPRMQ9NS64 109 aa1.77□□□□□ -2.13
CD44-235ENST00000532339 FAM32AQ9Y421 112 aaKnown RBP1.77□□□□□ -2.13
CD44-235ENST00000532339 AHNAKQ09666 5890 aaKnown RBP1.76□□□□□ -2.13
CD44-235ENST00000532339 TRGV1A0A0A0MS02 117 aa1.76□□□□□ -2.13
CD44-235ENST00000532339 TRAV16A0A0A6YYK6 109 aaPredicted RBP1.76□□□□□ -2.13
CD44-235ENST00000532339 I3L2K1 104 aa1.76□□□□□ -2.13
CD44-235ENST00000532339 SYNGR2O43760 224 aa1.76□□□□□ -2.13
CD44-235ENST00000532339 RPP14O95059 124 aaKnown RBP1.76□□□□□ -2.13
CD44-235ENST00000532339 MT2AP02795 61 aa1.76□□□□□ -2.13
CD44-235ENST00000532339 LINC00614P0C842 121 aa1.76□□□□□ -2.13
CD44-235ENST00000532339 ZNF22P17026 224 aaPredicted RBP1.76□□□□□ -2.13
CD44-235ENST00000532339 LGALS3P17931 250 aaKnown RBP1.76□□□□□ -2.13
CD44-235ENST00000532339 CXCL2P19875 107 aa1.76□□□□□ -2.13
CD44-235ENST00000532339 CXCR4P61073 352 aa1.76□□□□□ -2.13
CD44-235ENST00000532339 MLLT11Q13015 90 aaPredicted RBP1.76□□□□□ -2.13
CD44-235ENST00000532339 OR2F1Q13607 317 aa1.76□□□□□ -2.13
CD44-235ENST00000532339 TMEM244Q5VVB8 128 aa1.76□□□□□ -2.13
CD44-235ENST00000532339 RASSF6Q6ZTQ3 369 aa1.76□□□□□ -2.13
CD44-235ENST00000532339 FP248Q71RG6 208 aaPredicted RBP1.76□□□□□ -2.13
CD44-235ENST00000532339 OR5D14Q8NGL3 314 aa1.76□□□□□ -2.13
CD44-235ENST00000532339 DNAJC30Q96LL9 226 aa1.76□□□□□ -2.13
CD44-235ENST00000532339 S100A13Q99584 98 aa1.76□□□□□ -2.13
CD44-235ENST00000532339 C20orf27Q9GZN8 174 aa1.76□□□□□ -2.13
CD44-235ENST00000532339 COMMD5Q9GZQ3 224 aa1.76□□□□□ -2.13
CD44-235ENST00000532339 CCDC167Q9P0B6 97 aa1.76□□□□□ -2.13
CD44-235ENST00000532339 TRGV4A0A0C4DH28 118 aa1.75□□□□□ -2.13
CD44-235ENST00000532339 ATG12O94817 140 aa1.75□□□□□ -2.13
CD44-235ENST00000532339 MT-CO2P00403 227 aa1.75□□□□□ -2.13
CD44-235ENST00000532339 IGKV4-1P06312 121 aa1.75□□□□□ -2.13
CD44-235ENST00000532339 HTR1AP08908 422 aa1.75□□□□□ -2.13
CD44-235ENST00000532339 TRAPPC2P0DI81 140 aa1.75□□□□□ -2.13
CD44-235ENST00000532339 TRAPPC2BP0DI82 140 aa1.75□□□□□ -2.13
CD44-235ENST00000532339 CXCL3P19876 107 aa1.75□□□□□ -2.13
CD44-235ENST00000532339 SMIM11AP58511 58 aa1.75□□□□□ -2.13
CD44-235ENST00000532339 CTAG1AP78358 180 aa1.75□□□□□ -2.13
CD44-235ENST00000532339 GPR146Q96CH1 333 aa1.75□□□□□ -2.13
CD44-235ENST00000532339 HIGD2AQ9BW72 106 aa1.75□□□□□ -2.13
CD44-235ENST00000532339 BET1LQ9NYM9 111 aa1.75□□□□□ -2.13
CD44-235ENST00000532339 IGLV10-54A0A075B6I4 117 aa1.74□□□□□ -2.13
CD44-235ENST00000532339 A0A1W2PNM2 257 aa1.74□□□□□ -2.13
CD44-235ENST00000532339 IGSF23A1L1A6 192 aa1.74□□□□□ -2.13
CD44-235ENST00000532339 GSTZ1O43708 216 aaPredicted RBP1.74□□□□□ -2.13
CD44-235ENST00000532339 SPINK4O60575 86 aa1.74□□□□□ -2.13
CD44-235ENST00000532339 GADD45GO95257 159 aa1.74□□□□□ -2.13
CD44-235ENST00000532339 CDS2O95674 445 aa1.74□□□□□ -2.13
CD44-235ENST00000532339 MT-ND6P03923 174 aa1.74□□□□□ -2.13
CD44-235ENST00000532339 MT1FP04733 61 aa1.74□□□□□ -2.13
CD44-235ENST00000532339 TYMSP04818 313 aa1.74□□□□□ -2.13
CD44-235ENST00000532339 SERPINB10P48595 397 aa1.74□□□□□ -2.13
CD44-235ENST00000532339 DAPP51397 102 aa1.74□□□□□ -2.13
CD44-235ENST00000532339 KRTAP12-4P60329 112 aa1.74□□□□□ -2.13
CD44-235ENST00000532339 HERVK_113P63121 156 aa1.74□□□□□ -2.13
CD44-235ENST00000532339 COX6A2Q02221 97 aa1.74□□□□□ -2.13
CD44-235ENST00000532339 Q0VG73 95 aa1.74□□□□□ -2.13
CD44-235ENST00000532339 GUK1Q16774 197 aa1.74□□□□□ -2.13
CD44-235ENST00000532339 C1orf137Q5JT78 98 aa1.74□□□□□ -2.13
CD44-235ENST00000532339 ATP5L2Q7Z4Y8 100 aa1.74□□□□□ -2.13
CD44-235ENST00000532339 OR10P1Q8NGE3 313 aa1.74□□□□□ -2.13
CD44-235ENST00000532339 OR10D4PQ8NGN7 298 aa1.74□□□□□ -2.13
CD44-235ENST00000532339 CMTM2Q8TAZ6 248 aa1.74□□□□□ -2.13
CD44-235ENST00000532339 LSM10Q969L4 123 aaKnown RBP1.74□□□□□ -2.13
CD44-235ENST00000532339 EIF5A2Q9GZV4 153 aaKnown RBP1.74□□□□□ -2.13
CD44-235ENST00000532339 MED28Q9H204 178 aa1.74□□□□□ -2.13
CD44-235ENST00000532339 SH3BGRL3Q9H299 93 aa1.74□□□□□ -2.13
CD44-235ENST00000532339 ARMC1Q9NVT9 282 aa1.74□□□□□ -2.13
CD44-235ENST00000532339 PRELID3BQ9Y3B1 194 aa1.74□□□□□ -2.13
CD44-235ENST00000532339 TEX50A0A1B0GTY4 177 aa1.73□□□□□ -2.13
CD44-235ENST00000532339 ZNF670-ZNF695F2Z2N8 137 aa1.73□□□□□ -2.13
CD44-235ENST00000532339 MRASO14807 208 aa1.73□□□□□ -2.13
CD44-235ENST00000532339 SSNA1O43805 119 aa1.73□□□□□ -2.13
CD44-235ENST00000532339 OR10J4P0C629 311 aa1.73□□□□□ -2.13
CD44-235ENST00000532339 HLA-DRB3P79483 266 aa1.73□□□□□ -2.13
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms