RNA–Protein interactions for RNA: ENST00000527827.1

CPSF1-202, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 619 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-202ENST00000527827 CST9LP1Q5W188 147 aa15.1■□□□□ 0.01
CPSF1-202ENST00000527827 CLPSL2Q6UWE3 100 aa15.1■□□□□ 0.01
CPSF1-202ENST00000527827 VAX2Q9UIW0 290 aa15.1■□□□□ 0.01
CPSF1-202ENST00000527827 CXCL1P09341 107 aa15.09■□□□□ 0.01
CPSF1-202ENST00000527827 RBX1P62877 108 aa15.09■□□□□ 0.01
CPSF1-202ENST00000527827 SSBP4Q9BWG4 385 aaPredicted RBP15.09■□□□□ 0.01
CPSF1-202ENST00000527827 ZNF471Q9BX82 626 aaPredicted RBP15.09■□□□□ 0.01
CPSF1-202ENST00000527827 MUC21A0A0G2JKD1 596 aa15.08■□□□□ 0
CPSF1-202ENST00000527827 MUC21A0A140T8X8 626 aa15.08■□□□□ 0
CPSF1-202ENST00000527827 SNAI2O43623 268 aa15.08■□□□□ 0
CPSF1-202ENST00000527827 LINC00269Q8N2A0 174 aa15.08■□□□□ 0
CPSF1-202ENST00000527827 SREK1IP1Q8N9Q2 155 aaPredicted RBP15.08■□□□□ 0
CPSF1-202ENST00000527827 GAGE6Q13070 117 aa15.07■□□□□ 0
CPSF1-202ENST00000527827 TMEM97Q5BJF2 176 aa15.07■□□□□ 0
CPSF1-202ENST00000527827 F5H697 171 aa15.06■□□□□ 0
CPSF1-202ENST00000527827 STOML3Q8TAV4 291 aa15.06■□□□□ 0
CPSF1-202ENST00000527827 KIF25-AS1Q9Y6Z4 181 aa15.06■□□□□ 0
CPSF1-202ENST00000527827 PAGE4O60829 102 aa15.05■□□□□ -0
CPSF1-202ENST00000527827 OR5AL1P0C617 328 aa15.05■□□□□ -0
CPSF1-202ENST00000527827 SPANXN1Q5VSR9 72 aa15.05■□□□□ -0
CPSF1-202ENST00000527827 DERL1Q9BUN8 251 aa15.05■□□□□ -0
CPSF1-202ENST00000527827 MLST8Q9BVC4 326 aa15.05■□□□□ -0
CPSF1-202ENST00000527827 CYTL1Q9NRR1 136 aa15.05■□□□□ -0
CPSF1-202ENST00000527827 CIRBPQ14011 172 aaKnown RBP15.04■□□□□ -0
CPSF1-202ENST00000527827 Q6ZRU5 148 aa15.04■□□□□ -0
CPSF1-202ENST00000527827 G3V3Q6 166 aa15.03■□□□□ -0
CPSF1-202ENST00000527827 CLRN3Q8NCR9 226 aa15.03■□□□□ -0
CPSF1-202ENST00000527827 TRBV25-1A0A075B6N4 114 aa15.02■□□□□ -0
CPSF1-202ENST00000527827 A0A0D9SG52 128 aa15.02■□□□□ -0
CPSF1-202ENST00000527827 S100A9P06702 114 aaKnown RBP15.02■□□□□ -0
CPSF1-202ENST00000527827 SSTP61278 116 aa15.02■□□□□ -0
CPSF1-202ENST00000527827 CNBPP62633 177 aaKnown RBP15.02■□□□□ -0
CPSF1-202ENST00000527827 IQCJQ1A5X6 159 aa15.02■□□□□ -0
CPSF1-202ENST00000527827 IGLV10-54A0A075B6I4 117 aa15.01□□□□□ -0.01
CPSF1-202ENST00000527827 SCO2A0A1W2PP80 73 aa15.01□□□□□ -0.01
CPSF1-202ENST00000527827 REG3AQ06141 175 aa15.01□□□□□ -0.01
CPSF1-202ENST00000527827 BAGE2Q86Y30 109 aa15□□□□□ -0.01
CPSF1-202ENST00000527827 IGHV1-24A0A0C4DH33 117 aa14.99□□□□□ -0.01
CPSF1-202ENST00000527827 C20orf203Q8NBC4 194 aa14.99□□□□□ -0.01
CPSF1-202ENST00000527827 hDV102S1A0JD36 115 aa14.98□□□□□ -0.01
CPSF1-202ENST00000527827 SLPIP03973 132 aa14.98□□□□□ -0.01
CPSF1-202ENST00000527827 SMIM17P0DL12 118 aa14.98□□□□□ -0.01
CPSF1-202ENST00000527827 AP1S3Q96PC3 154 aa14.98□□□□□ -0.01
CPSF1-202ENST00000527827 M0QY20 66 aa14.97□□□□□ -0.01
CPSF1-202ENST00000527827 ARPC5O15511 151 aa14.97□□□□□ -0.01
CPSF1-202ENST00000527827 MBD3L1Q8WWY6 194 aa14.97□□□□□ -0.01
CPSF1-202ENST00000527827 IGHV3-64A0A075B6Q5 118 aa14.96□□□□□ -0.01
CPSF1-202ENST00000527827 A0A087WYN8 130 aa14.96□□□□□ -0.01
CPSF1-202ENST00000527827 CHTF8P0CG12 524 aa14.96□□□□□ -0.01
CPSF1-202ENST00000527827 SFT2D1Q8WV19 159 aa14.96□□□□□ -0.01
CPSF1-202ENST00000527827 GFRA4Q9GZZ7 299 aa14.96□□□□□ -0.01
CPSF1-202ENST00000527827 IGLV4-60A0A075B6I1 120 aa14.95□□□□□ -0.02
CPSF1-202ENST00000527827 TRAV8-4A0A0B4J246 113 aa14.95□□□□□ -0.02
CPSF1-202ENST00000527827 A0A1B0GV50 99 aa14.95□□□□□ -0.02
CPSF1-202ENST00000527827 P01737 135 aa14.95□□□□□ -0.02
CPSF1-202ENST00000527827 SPACA4Q8TDM5 124 aa14.94□□□□□ -0.02
CPSF1-202ENST00000527827 RNF185Q96GF1 192 aa14.94□□□□□ -0.02
CPSF1-202ENST00000527827 A0A1B0GUV1 79 aa14.93□□□□□ -0.02
CPSF1-202ENST00000527827 PFDN1O60925 122 aa14.93□□□□□ -0.02
CPSF1-202ENST00000527827 MGPP08493 103 aa14.93□□□□□ -0.02
CPSF1-202ENST00000527827 SUMO4Q6EEV6 95 aa14.93□□□□□ -0.02
CPSF1-202ENST00000527827 TMUB2Q71RG4 321 aa14.93□□□□□ -0.02
CPSF1-202ENST00000527827 FAM213BQ8TBF2 198 aa14.93□□□□□ -0.02
CPSF1-202ENST00000527827 DPH3Q96FX2 82 aa14.93□□□□□ -0.02
CPSF1-202ENST00000527827 AP5S1Q9NUS5 200 aa14.93□□□□□ -0.02
CPSF1-202ENST00000527827 TNXBP22105 4242 aa14.92□□□□□ -0.02
CPSF1-202ENST00000527827 RAB5CP51148 216 aa14.92□□□□□ -0.02
CPSF1-202ENST00000527827 LRP2P98164 4655 aa14.91□□□□□ -0.02
CPSF1-202ENST00000527827 TRAV16A0A0A6YYK6 109 aaPredicted RBP14.91□□□□□ -0.02
CPSF1-202ENST00000527827 IGLC6P0CF74 106 aa14.91□□□□□ -0.02
CPSF1-202ENST00000527827 GZMBP10144 247 aa14.91□□□□□ -0.02
CPSF1-202ENST00000527827 NKX2-5P52952 324 aaPredicted RBP14.91□□□□□ -0.02
CPSF1-202ENST00000527827 TMEM243Q9BU79 118 aa14.91□□□□□ -0.02
CPSF1-202ENST00000527827 H7C1H1 209 aa14.9□□□□□ -0.02
CPSF1-202ENST00000527827 PLAC8Q9NZF1 115 aa14.9□□□□□ -0.02
CPSF1-202ENST00000527827 RPL35P42766 123 aaKnown RBP14.89□□□□□ -0.03
CPSF1-202ENST00000527827 KCNRGQ8N5I3 272 aa14.89□□□□□ -0.03
CPSF1-202ENST00000527827 UMAD1C9J7I0 102 aa14.88□□□□□ -0.03
CPSF1-202ENST00000527827 PHOX2AO14813 284 aa14.88□□□□□ -0.03
CPSF1-202ENST00000527827 FER1L6-AS1Q8NA97 138 aa14.88□□□□□ -0.03
CPSF1-202ENST00000527827 TPPP3Q9BW30 176 aa14.88□□□□□ -0.03
CPSF1-202ENST00000527827 SMLR1H3BR10 107 aa14.87□□□□□ -0.03
CPSF1-202ENST00000527827 RASL11AQ6T310 242 aa14.87□□□□□ -0.03
CPSF1-202ENST00000527827 C15orf56Q8N910 161 aa14.87□□□□□ -0.03
CPSF1-202ENST00000527827 PGLYRP4Q96LB8 373 aa14.87□□□□□ -0.03
CPSF1-202ENST00000527827 H2AFB1P0C5Y9 115 aa14.85□□□□□ -0.03
CPSF1-202ENST00000527827 CACNG7P62955 275 aa14.85□□□□□ -0.03
CPSF1-202ENST00000527827 RPS20P60866 119 aaKnown RBP14.84□□□□□ -0.03
CPSF1-202ENST00000527827 OR2D3Q8NGH3 330 aa14.84□□□□□ -0.03
CPSF1-202ENST00000527827 C11orf52Q96A22 123 aa14.84□□□□□ -0.03
CPSF1-202ENST00000527827 NIT2Q9NQR4 276 aa14.84□□□□□ -0.03
CPSF1-202ENST00000527827 C19orf71A6NCJ1 209 aa14.83□□□□□ -0.04
CPSF1-202ENST00000527827 COX6A2Q02221 97 aa14.83□□□□□ -0.04
CPSF1-202ENST00000527827 ZNF345Q14585 488 aa14.83□□□□□ -0.04
CPSF1-202ENST00000527827 CENPWQ5EE01 88 aa14.83□□□□□ -0.04
CPSF1-202ENST00000527827 WDR73Q6P4I2 378 aa14.83□□□□□ -0.04
CPSF1-202ENST00000527827 C7orf33Q8WU49 177 aa14.83□□□□□ -0.04
CPSF1-202ENST00000527827 GAGE12HA6NDE8 117 aa14.82□□□□□ -0.04
CPSF1-202ENST00000527827 SULT1A2P50226 295 aa14.82□□□□□ -0.04
CPSF1-202ENST00000527827 UBE2L6O14933 153 aa14.81□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms