RNA–Protein interactions for RNA: ENST00000512632.5

LIMCH1-215, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 4,792 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-215ENST00000512632 ADARB2-AS1A8MUL3 147 aa6.86□□□□□ -1.31
LIMCH1-215ENST00000512632 IGHV3-30P01768 117 aa6.86□□□□□ -1.31
LIMCH1-215ENST00000512632 IGHV3-30-5P0DP03 117 aa6.86□□□□□ -1.31
LIMCH1-215ENST00000512632 NRGNQ92686 78 aa6.86□□□□□ -1.31
LIMCH1-215ENST00000512632 MYO18BQ8IUG5 2567 aa6.86□□□□□ -1.31
LIMCH1-215ENST00000512632 MSMBP08118 114 aa6.86□□□□□ -1.31
LIMCH1-215ENST00000512632 TLN2Q9Y4G6 2542 aa6.86□□□□□ -1.31
LIMCH1-215ENST00000512632 A4D1N5 150 aa6.86□□□□□ -1.31
LIMCH1-215ENST00000512632 C1QTNF4Q9BXJ3 329 aa6.86□□□□□ -1.31
LIMCH1-215ENST00000512632 ITPR1Q14643 2758 aa6.86□□□□□ -1.31
LIMCH1-215ENST00000512632 LGALS9O00182 355 aa6.86□□□□□ -1.31
LIMCH1-215ENST00000512632 UBE2D3P61077 147 aa6.86□□□□□ -1.31
LIMCH1-215ENST00000512632 UBE2D2P62837 147 aa6.86□□□□□ -1.31
LIMCH1-215ENST00000512632 NACAE9PAV3 2078 aa6.86□□□□□ -1.31
LIMCH1-215ENST00000512632 A0A0J9YX75 114 aa6.85□□□□□ -1.31
LIMCH1-215ENST00000512632 RNASE13Q5GAN3 156 aaKnown RBP6.85□□□□□ -1.31
LIMCH1-215ENST00000512632 C10orf126Q8N4M7 172 aa6.85□□□□□ -1.31
LIMCH1-215ENST00000512632 MAPK1IP1LQ8NDC0 245 aa6.85□□□□□ -1.31
LIMCH1-215ENST00000512632 IGHV1OR15-1A0A075B7D0 117 aa6.85□□□□□ -1.31
LIMCH1-215ENST00000512632 KNCNA6PVL3 124 aa6.85□□□□□ -1.31
LIMCH1-215ENST00000512632 K7EMT4 169 aa6.85□□□□□ -1.31
LIMCH1-215ENST00000512632 SNRPD3P62318 126 aaKnown RBP6.85□□□□□ -1.31
LIMCH1-215ENST00000512632 RPL32P62910 135 aaKnown RBP6.85□□□□□ -1.31
LIMCH1-215ENST00000512632 PRO1854Q9UHT4 67 aa6.85□□□□□ -1.31
LIMCH1-215ENST00000512632 PROK1P58294 105 aa6.85□□□□□ -1.31
LIMCH1-215ENST00000512632 CEMP1Q6PRD7 247 aaPredicted RBP6.85□□□□□ -1.31
LIMCH1-215ENST00000512632 C9orf85Q96MD7 179 aa6.85□□□□□ -1.31
LIMCH1-215ENST00000512632 CARD19Q96LW7 228 aa6.85□□□□□ -1.31
LIMCH1-215ENST00000512632 AMELXQ99217 191 aa6.85□□□□□ -1.31
LIMCH1-215ENST00000512632 SPXQ9BT56 116 aa6.85□□□□□ -1.31
LIMCH1-215ENST00000512632 VCX2Q9H322 139 aa6.85□□□□□ -1.31
LIMCH1-215ENST00000512632 DEFB112Q30KQ8 113 aa6.84□□□□□ -1.31
LIMCH1-215ENST00000512632 CFAP46Q8IYW2 2715 aa6.84□□□□□ -1.31
LIMCH1-215ENST00000512632 TRBV6-5A0A0K0K1A5 114 aa6.84□□□□□ -1.31
LIMCH1-215ENST00000512632 BEX4Q9NWD9 120 aaPredicted RBP6.84□□□□□ -1.31
LIMCH1-215ENST00000512632 PRSS2P07478 247 aa6.84□□□□□ -1.31
LIMCH1-215ENST00000512632 FHL3Q13643 280 aa6.84□□□□□ -1.31
LIMCH1-215ENST00000512632 Q9UF83 564 aa6.84□□□□□ -1.31
LIMCH1-215ENST00000512632 CIDEAO60543 219 aa6.84□□□□□ -1.32
LIMCH1-215ENST00000512632 MUSTN1Q8IVN3 82 aa6.84□□□□□ -1.32
LIMCH1-215ENST00000512632 C20orf203Q8NBC4 194 aa6.84□□□□□ -1.32
LIMCH1-215ENST00000512632 CDIP1Q9H305 208 aa6.84□□□□□ -1.32
LIMCH1-215ENST00000512632 PTPN13Q12923 2485 aa6.84□□□□□ -1.32
LIMCH1-215ENST00000512632 K7EQG2 157 aa6.83□□□□□ -1.32
LIMCH1-215ENST00000512632 BRI3O95415 125 aa6.83□□□□□ -1.32
LIMCH1-215ENST00000512632 ZNF22P17026 224 aaPredicted RBP6.83□□□□□ -1.32
LIMCH1-215ENST00000512632 PSMB8P28062 276 aa6.83□□□□□ -1.32
LIMCH1-215ENST00000512632 CFHR3Q02985 330 aa6.83□□□□□ -1.32
LIMCH1-215ENST00000512632 TRPT1Q86TN4 253 aaKnown RBP6.83□□□□□ -1.32
LIMCH1-215ENST00000512632 WNK1Q9H4A3 2382 aa6.83□□□□□ -1.32
LIMCH1-215ENST00000512632 A8MWV9 139 aa6.83□□□□□ -1.32
LIMCH1-215ENST00000512632 MT-ATP8P03928 68 aa6.83□□□□□ -1.32
LIMCH1-215ENST00000512632 LYRM7Q5U5X0 104 aa6.83□□□□□ -1.32
LIMCH1-215ENST00000512632 DOPEY1Q5JWR5 2465 aa6.83□□□□□ -1.32
LIMCH1-215ENST00000512632 ZFYVE26Q68DK2 2539 aa6.83□□□□□ -1.32
LIMCH1-215ENST00000512632 Q1RN00 199 aa6.83□□□□□ -1.32
LIMCH1-215ENST00000512632 C9JAW5 83 aa6.82□□□□□ -1.32
LIMCH1-215ENST00000512632 EIF4EBP3O60516 100 aaPredicted RBP6.82□□□□□ -1.32
LIMCH1-215ENST00000512632 SPINK8P0C7L1 97 aa6.82□□□□□ -1.32
LIMCH1-215ENST00000512632 SCGB1A1P11684 91 aa6.82□□□□□ -1.32
LIMCH1-215ENST00000512632 TEN1Q86WV5 123 aa6.82□□□□□ -1.32
LIMCH1-215ENST00000512632 UTP20O75691 2785 aaKnown RBP6.82□□□□□ -1.32
LIMCH1-215ENST00000512632 SETD2Q9BYW2 2564 aaPredicted RBP6.82□□□□□ -1.32
LIMCH1-215ENST00000512632 IGLV4-3A0A075B6K6 122 aa6.82□□□□□ -1.32
LIMCH1-215ENST00000512632 TRAV8-3A0A0A6YYJ7 113 aa6.82□□□□□ -1.32
LIMCH1-215ENST00000512632 TMEM223A0PJW6 202 aa6.82□□□□□ -1.32
LIMCH1-215ENST00000512632 RHODO00212 210 aa6.82□□□□□ -1.32
LIMCH1-215ENST00000512632 CKS1BP61024 79 aa6.82□□□□□ -1.32
LIMCH1-215ENST00000512632 CUBNO60494 3623 aa6.82□□□□□ -1.32
LIMCH1-215ENST00000512632 I3L3M4 83 aa6.82□□□□□ -1.32
LIMCH1-215ENST00000512632 CSMD2Q7Z408 3487 aa6.82□□□□□ -1.32
LIMCH1-215ENST00000512632 PPDPFLQ8WWR9 84 aa6.82□□□□□ -1.32
LIMCH1-215ENST00000512632 ERG28Q9UKR5 140 aa6.82□□□□□ -1.32
LIMCH1-215ENST00000512632 XGP55808 180 aa6.81□□□□□ -1.32
LIMCH1-215ENST00000512632 RHOHQ15669 191 aa6.81□□□□□ -1.32
LIMCH1-215ENST00000512632 ANKRD29Q8N6D5 301 aa6.81□□□□□ -1.32
LIMCH1-215ENST00000512632 SONP18583 2426 aaKnown RBP6.81□□□□□ -1.32
LIMCH1-215ENST00000512632 TRBV20-1A0A075B6N2 111 aa6.81□□□□□ -1.32
LIMCH1-215ENST00000512632 A0A1B0GV72 72 aa6.81□□□□□ -1.32
LIMCH1-215ENST00000512632 A8MZ25 164 aa6.81□□□□□ -1.32
LIMCH1-215ENST00000512632 B4DSR2 109 aa6.81□□□□□ -1.32
LIMCH1-215ENST00000512632 LEPROTO15243 131 aa6.81□□□□□ -1.32
LIMCH1-215ENST00000512632 IGHV3-33P01772 117 aa6.81□□□□□ -1.32
LIMCH1-215ENST00000512632 CD28P10747 220 aa6.81□□□□□ -1.32
LIMCH1-215ENST00000512632 NPC2P61916 151 aa6.81□□□□□ -1.32
LIMCH1-215ENST00000512632 RBMY1A1P0DJD3 496 aaKnown RBP6.81□□□□□ -1.32
LIMCH1-215ENST00000512632 RBMY1CP0DJD4 496 aa6.81□□□□□ -1.32
LIMCH1-215ENST00000512632 RBMY1FQ15415 496 aaKnown RBP6.81□□□□□ -1.32
LIMCH1-215ENST00000512632 NSUN5P1Q3KNT7 163 aa6.81□□□□□ -1.32
LIMCH1-215ENST00000512632 HIST2H2BDQ6DRA6 164 aa6.81□□□□□ -1.32
LIMCH1-215ENST00000512632 DEFB136Q30KP8 78 aa6.81□□□□□ -1.32
LIMCH1-215ENST00000512632 ATP6V0E2Q8NHE4 81 aa6.81□□□□□ -1.32
LIMCH1-215ENST00000512632 LRRK2Q5S007 2527 aa6.8□□□□□ -1.32
LIMCH1-215ENST00000512632 DEFB131AP59861 70 aa6.8□□□□□ -1.32
LIMCH1-215ENST00000512632 ELANEP08246 267 aa6.8□□□□□ -1.32
LIMCH1-215ENST00000512632 PRRC2AP48634 2157 aaKnown RBP6.8□□□□□ -1.32
LIMCH1-215ENST00000512632 ABCA12Q86UK0 2595 aa6.8□□□□□ -1.32
LIMCH1-215ENST00000512632 SLC25A20O43772 301 aa6.8□□□□□ -1.32
LIMCH1-215ENST00000512632 IGHV3-30-3P0DP02 117 aa6.8□□□□□ -1.32
LIMCH1-215ENST00000512632 HOXD3P31249 432 aaPredicted RBP6.8□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 565.4 ms