RNA–Protein interactions for RNA: ENST00000507293.1

HMGCS1-204, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

TSL 1 (best)

Gene HMGCS1, Length 708 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-204ENST00000507293 MUC21A0A140T8X8 626 aa7.52□□□□□ -1.21
HMGCS1-204ENST00000507293 SNAI2O43623 268 aa7.52□□□□□ -1.21
HMGCS1-204ENST00000507293 S100A9P06702 114 aaKnown RBP7.52□□□□□ -1.21
HMGCS1-204ENST00000507293 BAGE2Q86Y30 109 aa7.52□□□□□ -1.21
HMGCS1-204ENST00000507293 CIRBP-AS1Q8TBR5 109 aa7.52□□□□□ -1.21
HMGCS1-204ENST00000507293 SFT2D1Q8WV19 159 aa7.52□□□□□ -1.21
HMGCS1-204ENST00000507293 MBD3L1Q8WWY6 194 aa7.52□□□□□ -1.21
HMGCS1-204ENST00000507293 HLA-DQA1P01909 254 aa7.51□□□□□ -1.21
HMGCS1-204ENST00000507293 ANGP03950 147 aaKnown RBP7.51□□□□□ -1.21
HMGCS1-204ENST00000507293 KRTAP10-4P60372 401 aaPredicted RBP7.51□□□□□ -1.21
HMGCS1-204ENST00000507293 C14orf177Q52M58 125 aa7.51□□□□□ -1.21
HMGCS1-204ENST00000507293 SPANXN1Q5VSR9 72 aa7.51□□□□□ -1.21
HMGCS1-204ENST00000507293 SLC51BQ86UW2 128 aa7.51□□□□□ -1.21
HMGCS1-204ENST00000507293 CHCHD5Q9BSY4 110 aa7.51□□□□□ -1.21
HMGCS1-204ENST00000507293 MLST8Q9BVC4 326 aa7.51□□□□□ -1.21
HMGCS1-204ENST00000507293 USP17L23D6RBM5 183 aa7.5□□□□□ -1.21
HMGCS1-204ENST00000507293 F5H697 171 aa7.5□□□□□ -1.21
HMGCS1-204ENST00000507293 OR5AL1P0C617 328 aa7.5□□□□□ -1.21
HMGCS1-204ENST00000507293 RAB5CP51148 216 aa7.5□□□□□ -1.21
HMGCS1-204ENST00000507293 SSTP61278 116 aa7.5□□□□□ -1.21
HMGCS1-204ENST00000507293 SREK1IP1Q8N9Q2 155 aaPredicted RBP7.5□□□□□ -1.21
HMGCS1-204ENST00000507293 SSBP4Q9BWG4 385 aaPredicted RBP7.5□□□□□ -1.21
HMGCS1-204ENST00000507293 PKIAP61925 76 aa7.49□□□□□ -1.21
HMGCS1-204ENST00000507293 CLPSL2Q6UWE3 100 aa7.49□□□□□ -1.21
HMGCS1-204ENST00000507293 NTM-AS1Q6ZSK4 140 aa7.49□□□□□ -1.21
HMGCS1-204ENST00000507293 C9orf62Q8N4C0 152 aa7.49□□□□□ -1.21
HMGCS1-204ENST00000507293 TEX46H3BTG2 121 aa7.48□□□□□ -1.21
HMGCS1-204ENST00000507293 IGLV2-8P01709 118 aa7.48□□□□□ -1.21
HMGCS1-204ENST00000507293 H2AFB1P0C5Y9 115 aa7.48□□□□□ -1.21
HMGCS1-204ENST00000507293 SMIM17P0DL12 118 aa7.48□□□□□ -1.21
HMGCS1-204ENST00000507293 MIAQ16674 131 aa7.48□□□□□ -1.21
HMGCS1-204ENST00000507293 TMEM97Q5BJF2 176 aa7.48□□□□□ -1.21
HMGCS1-204ENST00000507293 AP1S3Q96PC3 154 aa7.48□□□□□ -1.21
HMGCS1-204ENST00000507293 VAX2Q9UIW0 290 aa7.48□□□□□ -1.21
HMGCS1-204ENST00000507293 KIF25-AS1Q9Y6Z4 181 aa7.48□□□□□ -1.21
HMGCS1-204ENST00000507293 PRSS1P07477 247 aa7.47□□□□□ -1.21
HMGCS1-204ENST00000507293 MGPP08493 103 aa7.47□□□□□ -1.21
HMGCS1-204ENST00000507293 RPL35P42766 123 aaKnown RBP7.47□□□□□ -1.21
HMGCS1-204ENST00000507293 RBX1P62877 108 aa7.47□□□□□ -1.21
HMGCS1-204ENST00000507293 GAGE6Q13070 117 aa7.47□□□□□ -1.21
HMGCS1-204ENST00000507293 DERL1Q9BUN8 251 aa7.47□□□□□ -1.21
HMGCS1-204ENST00000507293 TRBV25-1A0A075B6N4 114 aa7.46□□□□□ -1.22
HMGCS1-204ENST00000507293 GZMBP10144 247 aa7.46□□□□□ -1.22
HMGCS1-204ENST00000507293 SULT1A2P50226 295 aa7.46□□□□□ -1.22
HMGCS1-204ENST00000507293 KRTAP26-1Q6PEX3 210 aa7.46□□□□□ -1.22
HMGCS1-204ENST00000507293 LINC00269Q8N2A0 174 aa7.46□□□□□ -1.22
HMGCS1-204ENST00000507293 C11orf52Q96A22 123 aa7.46□□□□□ -1.22
HMGCS1-204ENST00000507293 TPPP3Q9BW30 176 aa7.46□□□□□ -1.22
HMGCS1-204ENST00000507293 PRR34Q9NV39 138 aa7.46□□□□□ -1.22
HMGCS1-204ENST00000507293 GNG13Q9P2W3 67 aa7.46□□□□□ -1.22
HMGCS1-204ENST00000507293 RPL37AP61513 92 aaKnown RBP7.45□□□□□ -1.22
HMGCS1-204ENST00000507293 CCL20P78556 96 aa7.45□□□□□ -1.22
HMGCS1-204ENST00000507293 IQCJQ1A5X6 159 aa7.45□□□□□ -1.22
HMGCS1-204ENST00000507293 CENPWQ5EE01 88 aa7.45□□□□□ -1.22
HMGCS1-204ENST00000507293 FER1L6-AS1Q8NA97 138 aa7.45□□□□□ -1.22
HMGCS1-204ENST00000507293 MANBALQ9NQG1 85 aa7.45□□□□□ -1.22
HMGCS1-204ENST00000507293 TRAV1-1A0A0B4J248 108 aa7.44□□□□□ -1.22
HMGCS1-204ENST00000507293 IGHV1-24A0A0C4DH33 117 aa7.44□□□□□ -1.22
HMGCS1-204ENST00000507293 M0QY20 66 aa7.44□□□□□ -1.22
HMGCS1-204ENST00000507293 OXTP01178 125 aa7.44□□□□□ -1.22
HMGCS1-204ENST00000507293 IGLC6P0CF74 106 aa7.44□□□□□ -1.22
HMGCS1-204ENST00000507293 NKX2-5P52952 324 aaPredicted RBP7.44□□□□□ -1.22
HMGCS1-204ENST00000507293 SUMO4Q6EEV6 95 aa7.44□□□□□ -1.22
HMGCS1-204ENST00000507293 DGAT2L7PQ6IED9 249 aa7.44□□□□□ -1.22
HMGCS1-204ENST00000507293 C9orf163Q8N9P6 203 aa7.44□□□□□ -1.22
HMGCS1-204ENST00000507293 OR2D3Q8NGH3 330 aa7.44□□□□□ -1.22
HMGCS1-204ENST00000507293 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP7.44□□□□□ -1.22
HMGCS1-204ENST00000507293 IGLV10-54A0A075B6I4 117 aa7.43□□□□□ -1.22
HMGCS1-204ENST00000507293 H7C1H1 209 aa7.43□□□□□ -1.22
HMGCS1-204ENST00000507293 RPS20P60866 119 aaKnown RBP7.43□□□□□ -1.22
HMGCS1-204ENST00000507293 CACNG7P62955 275 aa7.43□□□□□ -1.22
HMGCS1-204ENST00000507293 DAZAP1Q96EP5 407 aaKnown RBP7.43□□□□□ -1.22
HMGCS1-204ENST00000507293 LRP1Q07954 4544 aaKnown RBP7.42□□□□□ -1.22
HMGCS1-204ENST00000507293 RAB19A4D1S5 217 aa7.42□□□□□ -1.22
HMGCS1-204ENST00000507293 C19orf71A6NCJ1 209 aa7.42□□□□□ -1.22
HMGCS1-204ENST00000507293 PANO1I0J062 215 aa7.42□□□□□ -1.22
HMGCS1-204ENST00000507293 IFNA1P01562 189 aa7.42□□□□□ -1.22
HMGCS1-204ENST00000507293 HNRNPA3P51991 378 aaKnown RBP7.42□□□□□ -1.22
HMGCS1-204ENST00000507293 BLOC1S1P78537 153 aa7.42□□□□□ -1.22
HMGCS1-204ENST00000507293 REG3AQ06141 175 aa7.42□□□□□ -1.22
HMGCS1-204ENST00000507293 C20orf203Q8NBC4 194 aa7.42□□□□□ -1.22
HMGCS1-204ENST00000507293 TMEM243Q9BU79 118 aa7.42□□□□□ -1.22
HMGCS1-204ENST00000507293 GNG4P50150 75 aa7.41□□□□□ -1.22
HMGCS1-204ENST00000507293 SERTAD4-AS1Q5TG53 156 aa7.41□□□□□ -1.22
HMGCS1-204ENST00000507293 RASL11AQ6T310 242 aa7.41□□□□□ -1.22
HMGCS1-204ENST00000507293 ALKAL2Q6UX46 152 aa7.41□□□□□ -1.22
HMGCS1-204ENST00000507293 IGLV4-60A0A075B6I1 120 aa7.4□□□□□ -1.22
HMGCS1-204ENST00000507293 XKRY2A2RUG3 117 aa7.4□□□□□ -1.22
HMGCS1-204ENST00000507293 P01737 135 aa7.4□□□□□ -1.22
HMGCS1-204ENST00000507293 TRGC1P0CF51 173 aa7.4□□□□□ -1.22
HMGCS1-204ENST00000507293 TAGLN2P37802 199 aaKnown RBP7.4□□□□□ -1.22
HMGCS1-204ENST00000507293 MEF2BQ02080 365 aaPredicted RBP7.4□□□□□ -1.22
HMGCS1-204ENST00000507293 SDIM1Q6ZPB5 146 aa7.4□□□□□ -1.22
HMGCS1-204ENST00000507293 CLRN3Q8NCR9 226 aa7.4□□□□□ -1.22
HMGCS1-204ENST00000507293 SMIM12Q96EX1 92 aa7.4□□□□□ -1.22
HMGCS1-204ENST00000507293 GFRA4Q9GZZ7 299 aa7.4□□□□□ -1.22
HMGCS1-204ENST00000507293 DPH3P1Q9H4G8 78 aa7.4□□□□□ -1.22
HMGCS1-204ENST00000507293 FAT3Q8TDW7 4589 aa7.39□□□□□ -1.23
HMGCS1-204ENST00000507293 TRBV20OR9-2A0A075B6H5 130 aa7.39□□□□□ -1.23
HMGCS1-204ENST00000507293 TRAV8-4A0A0B4J246 113 aa7.39□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 51.5 ms