RNA–Protein interactions for RNA: ENST00000506244.5

SNCA-209, Transcript of synuclein alpha, humanhuman

APPRIS P1 TSL 2 BASIC

Gene SNCA, Length 570 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Synapse .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNCA-209ENST00000506244 A0A1B0GVY2 172 aa11.33□□□□□ -0.6
SNCA-209ENST00000506244 SRSF3P84103 164 aaKnown RBP11.33□□□□□ -0.6
SNCA-209ENST00000506244 ISOC2Q96AB3 205 aa11.33□□□□□ -0.6
SNCA-209ENST00000506244 C9JQL5 133 aa11.32□□□□□ -0.6
SNCA-209ENST00000506244 RPL23P62829 140 aaKnown RBP11.32□□□□□ -0.6
SNCA-209ENST00000506244 TMEM97Q5BJF2 176 aa11.32□□□□□ -0.6
SNCA-209ENST00000506244 DNAJC30Q96LL9 226 aa11.32□□□□□ -0.6
SNCA-209ENST00000506244 URGCP-MRPS24S4R325 110 aa11.32□□□□□ -0.6
SNCA-209ENST00000506244 FOXA3P55318 350 aaPredicted RBP11.31□□□□□ -0.6
SNCA-209ENST00000506244 TNP2Q05952 138 aa11.31□□□□□ -0.6
SNCA-209ENST00000506244 LAGE3Q14657 143 aa11.31□□□□□ -0.6
SNCA-209ENST00000506244 SUMO4Q6EEV6 95 aa11.31□□□□□ -0.6
SNCA-209ENST00000506244 KCNIP4Q6PIL6 250 aa11.31□□□□□ -0.6
SNCA-209ENST00000506244 DAZ4Q86SG3 579 aaKnown RBP11.31□□□□□ -0.6
SNCA-209ENST00000506244 PGLYRP4Q96LB8 373 aa11.31□□□□□ -0.6
SNCA-209ENST00000506244 DAZ3Q9NR90 486 aaKnown RBP11.31□□□□□ -0.6
SNCA-209ENST00000506244 TNFRSF18Q9Y5U5 241 aa11.31□□□□□ -0.6
SNCA-209ENST00000506244 BIRC6Q9NR09 4857 aa11.3□□□□□ -0.6
SNCA-209ENST00000506244 HIGD1CA8MV81 97 aa11.3□□□□□ -0.6
SNCA-209ENST00000506244 M0QY20 66 aa11.3□□□□□ -0.6
SNCA-209ENST00000506244 CLLU1Q5K131 121 aa11.3□□□□□ -0.6
SNCA-209ENST00000506244 RASL11AQ6T310 242 aa11.3□□□□□ -0.6
SNCA-209ENST00000506244 CHCHD7Q9BUK0 85 aa11.3□□□□□ -0.6
SNCA-209ENST00000506244 A0A1B0GUT8 65 aa11.29□□□□□ -0.6
SNCA-209ENST00000506244 IGHV3-30P01768 117 aa11.29□□□□□ -0.6
SNCA-209ENST00000506244 IGHV3-33P01772 117 aa11.29□□□□□ -0.6
SNCA-209ENST00000506244 IGHV3-30-3P0DP02 117 aa11.29□□□□□ -0.6
SNCA-209ENST00000506244 IGHV3-30-5P0DP03 117 aa11.29□□□□□ -0.6
SNCA-209ENST00000506244 PKIAP61925 76 aa11.29□□□□□ -0.6
SNCA-209ENST00000506244 FRZBQ92765 325 aa11.29□□□□□ -0.6
SNCA-209ENST00000506244 V9GYV3 84 aa11.29□□□□□ -0.6
SNCA-209ENST00000506244 TRBV6-8A0A0A6YYG3 113 aa11.28□□□□□ -0.6
SNCA-209ENST00000506244 IBA57-AS1B1ANH7 110 aa11.28□□□□□ -0.6
SNCA-209ENST00000506244 Q6ZRN7 208 aaPredicted RBP11.28□□□□□ -0.6
SNCA-209ENST00000506244 A0A087WX48 190 aa11.27□□□□□ -0.61
SNCA-209ENST00000506244 EREGO14944 169 aa11.27□□□□□ -0.61
SNCA-209ENST00000506244 NIT2Q9NQR4 276 aa11.27□□□□□ -0.61
SNCA-209ENST00000506244 NAT8BQ9UHF3 227 aa11.27□□□□□ -0.61
SNCA-209ENST00000506244 ELOBQ15370 118 aa11.26□□□□□ -0.61
SNCA-209ENST00000506244 NIT1Q86X76 327 aa11.26□□□□□ -0.61
SNCA-209ENST00000506244 TRBV25-1A0A075B6N4 114 aa11.25□□□□□ -0.61
SNCA-209ENST00000506244 PNRC1Q12796 327 aaPredicted RBP11.25□□□□□ -0.61
SNCA-209ENST00000506244 RIGQ13278 110 aa11.25□□□□□ -0.61
SNCA-209ENST00000506244 TRAV8-3A0A0A6YYJ7 113 aa11.24□□□□□ -0.61
SNCA-209ENST00000506244 PSCAO43653 123 aa11.24□□□□□ -0.61
SNCA-209ENST00000506244 NUP35Q8NFH5 326 aa11.24□□□□□ -0.61
SNCA-209ENST00000506244 CHCHD5Q9BSY4 110 aa11.24□□□□□ -0.61
SNCA-209ENST00000506244 TMEM191AQ9H0A3 160 aa11.24□□□□□ -0.61
SNCA-209ENST00000506244 Q9HAA7 133 aa11.24□□□□□ -0.61
SNCA-209ENST00000506244 TM2D2Q9BX73 214 aa11.23□□□□□ -0.61
SNCA-209ENST00000506244 PKHD1P08F94 4074 aa11.23□□□□□ -0.61
SNCA-209ENST00000506244 TRAV26-2A0A0B4J265 109 aa11.22□□□□□ -0.61
SNCA-209ENST00000506244 IGHV1-24A0A0C4DH33 117 aa11.22□□□□□ -0.61
SNCA-209ENST00000506244 A0A1B0GW15 77 aa11.22□□□□□ -0.61
SNCA-209ENST00000506244 SMIM27A0A1W2PRY6 76 aa11.22□□□□□ -0.61
SNCA-209ENST00000506244 TMEM262E9PQX1 116 aa11.22□□□□□ -0.61
SNCA-209ENST00000506244 PPP1R2P9O14990 202 aa11.22□□□□□ -0.61
SNCA-209ENST00000506244 PKD1P98161 4303 aa11.22□□□□□ -0.61
SNCA-209ENST00000506244 IFITM2Q01629 132 aa11.22□□□□□ -0.61
SNCA-209ENST00000506244 UQCC3Q6UW78 93 aa11.22□□□□□ -0.61
SNCA-209ENST00000506244 Q8N3U1 123 aa11.22□□□□□ -0.61
SNCA-209ENST00000506244 GATD1Q8NB37 220 aa11.22□□□□□ -0.61
SNCA-209ENST00000506244 RMI2Q96E14 147 aa11.22□□□□□ -0.61
SNCA-209ENST00000506244 IQCJQ1A5X6 159 aa11.21□□□□□ -0.61
SNCA-209ENST00000506244 COX11Q9Y6N1 276 aa11.21□□□□□ -0.61
SNCA-209ENST00000506244 S100A8P05109 93 aa11.2□□□□□ -0.62
SNCA-209ENST00000506244 COTL1Q14019 142 aa11.2□□□□□ -0.62
SNCA-209ENST00000506244 MRAP2Q96G30 205 aa11.2□□□□□ -0.62
SNCA-209ENST00000506244 C16orf90A8MZG2 172 aa11.19□□□□□ -0.62
SNCA-209ENST00000506244 CRPP02741 224 aa11.19□□□□□ -0.62
SNCA-209ENST00000506244 Q0VG73 95 aa11.19□□□□□ -0.62
SNCA-209ENST00000506244 NTM-AS1Q6ZSK4 140 aa11.19□□□□□ -0.62
SNCA-209ENST00000506244 SPATA12Q7Z6I5 190 aa11.19□□□□□ -0.62
SNCA-209ENST00000506244 TMEM243Q9BU79 118 aa11.19□□□□□ -0.62
SNCA-209ENST00000506244 KLK12Q9UKR0 248 aa11.19□□□□□ -0.62
SNCA-209ENST00000506244 DNAH11Q96DT5 4516 aa11.18□□□□□ -0.62
SNCA-209ENST00000506244 MPV17L2Q567V2 206 aa11.18□□□□□ -0.62
SNCA-209ENST00000506244 RPL39LQ96EH5 51 aaKnown RBP11.18□□□□□ -0.62
SNCA-209ENST00000506244 A0A087WTM6 91 aa11.17□□□□□ -0.62
SNCA-209ENST00000506244 TRBV6-5A0A0K0K1A5 114 aa11.17□□□□□ -0.62
SNCA-209ENST00000506244 UBE2L6O14933 153 aa11.17□□□□□ -0.62
SNCA-209ENST00000506244 NCR2O95944 276 aa11.17□□□□□ -0.62
SNCA-209ENST00000506244 PPP1R17O96001 155 aa11.17□□□□□ -0.62
SNCA-209ENST00000506244 MT-ND4LP03901 98 aa11.17□□□□□ -0.62
SNCA-209ENST00000506244 AMTP48728 403 aa11.17□□□□□ -0.62
SNCA-209ENST00000506244 CDPF1Q6NVV7 123 aa11.17□□□□□ -0.62
SNCA-209ENST00000506244 AMN1Q8IY45 258 aa11.17□□□□□ -0.62
SNCA-209ENST00000506244 ANAPC16Q96DE5 110 aa11.17□□□□□ -0.62
SNCA-209ENST00000506244 SDHAF1A6NFY7 115 aa11.16□□□□□ -0.62
SNCA-209ENST00000506244 ANGP03950 147 aaKnown RBP11.16□□□□□ -0.62
SNCA-209ENST00000506244 RAB4AP20338 218 aa11.16□□□□□ -0.62
SNCA-209ENST00000506244 HBBP68871 147 aa11.16□□□□□ -0.62
SNCA-209ENST00000506244 UBE2WQ96B02 151 aa11.16□□□□□ -0.62
SNCA-209ENST00000506244 RNF185Q96GF1 192 aa11.16□□□□□ -0.62
SNCA-209ENST00000506244 ST20Q9HBF5 79 aa11.16□□□□□ -0.62
SNCA-209ENST00000506244 F8W036 122 aa11.15□□□□□ -0.62
SNCA-209ENST00000506244 CAMPP49913 170 aa11.15□□□□□ -0.62
SNCA-209ENST00000506244 GAGE6Q13070 117 aa11.15□□□□□ -0.62
SNCA-209ENST00000506244 ATRAIDQ6UW56 229 aa11.15□□□□□ -0.62
SNCA-209ENST00000506244 ATP5L2Q7Z4Y8 100 aa11.15□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 67.8 ms