RNA–Protein interactions for RNA: ENST00000506042.5

SQSTM1-210, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 921 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-210ENST00000506042 DPH3Q96FX2 82 aa13.63□□□□□ -0.23
SQSTM1-210ENST00000506042 DERL1Q9BUN8 251 aa13.63□□□□□ -0.23
SQSTM1-210ENST00000506042 KRTAP10-4P60372 401 aaPredicted RBP13.62□□□□□ -0.23
SQSTM1-210ENST00000506042 VAX2Q9UIW0 290 aa13.62□□□□□ -0.23
SQSTM1-210ENST00000506042 TRAV8-4A0A0B4J246 113 aa13.61□□□□□ -0.23
SQSTM1-210ENST00000506042 IGHV1-24A0A0C4DH33 117 aa13.61□□□□□ -0.23
SQSTM1-210ENST00000506042 P01737 135 aa13.61□□□□□ -0.23
SQSTM1-210ENST00000506042 BAGE2Q86Y30 109 aa13.61□□□□□ -0.23
SQSTM1-210ENST00000506042 OR10AG1Q8NH19 301 aa13.61□□□□□ -0.23
SQSTM1-210ENST00000506042 UMAD1C9J7I0 102 aa13.6□□□□□ -0.23
SQSTM1-210ENST00000506042 SNAI2O43623 268 aa13.6□□□□□ -0.23
SQSTM1-210ENST00000506042 PRSS1P07477 247 aa13.6□□□□□ -0.23
SQSTM1-210ENST00000506042 GZMBP10144 247 aa13.6□□□□□ -0.23
SQSTM1-210ENST00000506042 DPH3P1Q9H4G8 78 aa13.6□□□□□ -0.23
SQSTM1-210ENST00000506042 PRR34Q9NV39 138 aa13.6□□□□□ -0.23
SQSTM1-210ENST00000506042 PAGE4O60829 102 aa13.59□□□□□ -0.23
SQSTM1-210ENST00000506042 RBX1P62877 108 aa13.59□□□□□ -0.23
SQSTM1-210ENST00000506042 WDR73Q6P4I2 378 aa13.59□□□□□ -0.23
SQSTM1-210ENST00000506042 LINC00269Q8N2A0 174 aa13.59□□□□□ -0.23
SQSTM1-210ENST00000506042 ARPC5O15511 151 aa13.58□□□□□ -0.24
SQSTM1-210ENST00000506042 GAGE6Q13070 117 aa13.58□□□□□ -0.24
SQSTM1-210ENST00000506042 Q6ZRU5 148 aa13.58□□□□□ -0.24
SQSTM1-210ENST00000506042 SFT2D1Q8WV19 159 aa13.58□□□□□ -0.24
SQSTM1-210ENST00000506042 DAZAP1Q96EP5 407 aaKnown RBP13.58□□□□□ -0.24
SQSTM1-210ENST00000506042 RNF185Q96GF1 192 aa13.58□□□□□ -0.24
SQSTM1-210ENST00000506042 SSBP4Q9BWG4 385 aaPredicted RBP13.58□□□□□ -0.24
SQSTM1-210ENST00000506042 BATF3Q9NR55 127 aa13.58□□□□□ -0.24
SQSTM1-210ENST00000506042 IGHV3-64A0A075B6Q5 118 aa13.57□□□□□ -0.24
SQSTM1-210ENST00000506042 hDV102S1A0JD36 115 aa13.57□□□□□ -0.24
SQSTM1-210ENST00000506042 XKRY2A2RUG3 117 aa13.57□□□□□ -0.24
SQSTM1-210ENST00000506042 REG3AQ06141 175 aa13.57□□□□□ -0.24
SQSTM1-210ENST00000506042 Q5BKY6 102 aa13.57□□□□□ -0.24
SQSTM1-210ENST00000506042 CLPSL2Q6UWE3 100 aa13.57□□□□□ -0.24
SQSTM1-210ENST00000506042 UBE2L6O14933 153 aa13.56□□□□□ -0.24
SQSTM1-210ENST00000506042 RPS20P60866 119 aaKnown RBP13.56□□□□□ -0.24
SQSTM1-210ENST00000506042 IQCJQ1A5X6 159 aa13.56□□□□□ -0.24
SQSTM1-210ENST00000506042 MGPP08493 103 aa13.55□□□□□ -0.24
SQSTM1-210ENST00000506042 CNBPP62633 177 aaKnown RBP13.55□□□□□ -0.24
SQSTM1-210ENST00000506042 EIF5AP63241 154 aaKnown RBP13.55□□□□□ -0.24
SQSTM1-210ENST00000506042 FAM213BQ8TBF2 198 aa13.55□□□□□ -0.24
SQSTM1-210ENST00000506042 SSTP61278 116 aa13.54□□□□□ -0.24
SQSTM1-210ENST00000506042 CACNG7P62955 275 aa13.54□□□□□ -0.24
SQSTM1-210ENST00000506042 CFAP161Q6P656 301 aa13.54□□□□□ -0.24
SQSTM1-210ENST00000506042 C7orf33Q8WU49 177 aa13.54□□□□□ -0.24
SQSTM1-210ENST00000506042 TMEM243Q9BU79 118 aa13.54□□□□□ -0.24
SQSTM1-210ENST00000506042 TEX46H3BTG2 121 aa13.53□□□□□ -0.24
SQSTM1-210ENST00000506042 KCNRGQ8N5I3 272 aa13.53□□□□□ -0.24
SQSTM1-210ENST00000506042 SCO2A0A1W2PP80 73 aa13.52□□□□□ -0.25
SQSTM1-210ENST00000506042 TRGC1P0CF51 173 aa13.52□□□□□ -0.25
SQSTM1-210ENST00000506042 SDIM1Q6ZPB5 146 aa13.52□□□□□ -0.25
SQSTM1-210ENST00000506042 NTM-AS1Q6ZSK4 140 aa13.52□□□□□ -0.25
SQSTM1-210ENST00000506042 TMUB2Q71RG4 321 aa13.52□□□□□ -0.25
SQSTM1-210ENST00000506042 MLST8Q9BVC4 326 aa13.52□□□□□ -0.25
SQSTM1-210ENST00000506042 TPPP3Q9BW30 176 aa13.52□□□□□ -0.25
SQSTM1-210ENST00000506042 PKIGQ9Y2B9 76 aa13.52□□□□□ -0.25
SQSTM1-210ENST00000506042 MUC21A0A0G2JKD1 596 aa13.51□□□□□ -0.25
SQSTM1-210ENST00000506042 MUC21A0A140T8X8 626 aa13.51□□□□□ -0.25
SQSTM1-210ENST00000506042 A0A1B0GUV1 79 aa13.51□□□□□ -0.25
SQSTM1-210ENST00000506042 MBD3L1Q8WWY6 194 aa13.51□□□□□ -0.25
SQSTM1-210ENST00000506042 BIN3Q9NQY0 253 aa13.51□□□□□ -0.25
SQSTM1-210ENST00000506042 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP13.51□□□□□ -0.25
SQSTM1-210ENST00000506042 IGLV10-54A0A075B6I4 117 aa13.5□□□□□ -0.25
SQSTM1-210ENST00000506042 F2Z2F3 143 aa13.5□□□□□ -0.25
SQSTM1-210ENST00000506042 H2AFB1P0C5Y9 115 aa13.5□□□□□ -0.25
SQSTM1-210ENST00000506042 SULT1A2P50226 295 aa13.5□□□□□ -0.25
SQSTM1-210ENST00000506042 ZNF345Q14585 488 aa13.5□□□□□ -0.25
SQSTM1-210ENST00000506042 FER1L6-AS1Q8NA97 138 aa13.5□□□□□ -0.25
SQSTM1-210ENST00000506042 MANBALQ9NQG1 85 aa13.5□□□□□ -0.25
SQSTM1-210ENST00000506042 KANTRA0A1W2PQU2 76 aa13.49□□□□□ -0.25
SQSTM1-210ENST00000506042 RASL11AQ6T310 242 aa13.49□□□□□ -0.25
SQSTM1-210ENST00000506042 PGLYRP4Q96LB8 373 aa13.49□□□□□ -0.25
SQSTM1-210ENST00000506042 A0A1B0GV50 99 aa13.48□□□□□ -0.25
SQSTM1-210ENST00000506042 COTL1Q14019 142 aa13.48□□□□□ -0.25
SQSTM1-210ENST00000506042 SMIM12Q96EX1 92 aa13.48□□□□□ -0.25
SQSTM1-210ENST00000506042 CYTL1Q9NRR1 136 aa13.48□□□□□ -0.25
SQSTM1-210ENST00000506042 M0QY20 66 aa13.47□□□□□ -0.25
SQSTM1-210ENST00000506042 RPL35P42766 123 aaKnown RBP13.47□□□□□ -0.25
SQSTM1-210ENST00000506042 CIRBPQ14011 172 aaKnown RBP13.47□□□□□ -0.25
SQSTM1-210ENST00000506042 OR2D3Q8NGH3 330 aa13.47□□□□□ -0.25
SQSTM1-210ENST00000506042 KIF25-AS1Q9Y6Z4 181 aa13.47□□□□□ -0.25
SQSTM1-210ENST00000506042 DNAH8Q96JB1 4490 aa13.47□□□□□ -0.25
SQSTM1-210ENST00000506042 AMTP48728 403 aa13.46□□□□□ -0.25
SQSTM1-210ENST00000506042 NIT2Q9NQR4 276 aa13.46□□□□□ -0.25
SQSTM1-210ENST00000506042 NKX2-5P52952 324 aaPredicted RBP13.45□□□□□ -0.26
SQSTM1-210ENST00000506042 SUMO4Q6EEV6 95 aa13.45□□□□□ -0.26
SQSTM1-210ENST00000506042 KRTAP26-1Q6PEX3 210 aa13.45□□□□□ -0.26
SQSTM1-210ENST00000506042 EIF5AL1Q6IS14 154 aaKnown RBP13.44□□□□□ -0.26
SQSTM1-210ENST00000506042 A0A087WYN8 130 aa13.43□□□□□ -0.26
SQSTM1-210ENST00000506042 IFNA1P01562 189 aa13.43□□□□□ -0.26
SQSTM1-210ENST00000506042 GNG4P50150 75 aa13.43□□□□□ -0.26
SQSTM1-210ENST00000506042 HNRNPA3P51991 378 aaKnown RBP13.43□□□□□ -0.26
SQSTM1-210ENST00000506042 RGS21Q2M5E4 152 aa13.43□□□□□ -0.26
SQSTM1-210ENST00000506042 C20orf203Q8NBC4 194 aa13.43□□□□□ -0.26
SQSTM1-210ENST00000506042 CENPWQ5EE01 88 aa13.42□□□□□ -0.26
SQSTM1-210ENST00000506042 AMMECR1LQ6DCA0 310 aa13.42□□□□□ -0.26
SQSTM1-210ENST00000506042 SMIM15Q7Z3B0 74 aa13.42□□□□□ -0.26
SQSTM1-210ENST00000506042 SPACA4Q8TDM5 124 aa13.42□□□□□ -0.26
SQSTM1-210ENST00000506042 GNG13Q9P2W3 67 aa13.42□□□□□ -0.26
SQSTM1-210ENST00000506042 IGLC6P0CF74 106 aa13.41□□□□□ -0.26
SQSTM1-210ENST00000506042 RPS10P46783 165 aaKnown RBP13.41□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 59.9 ms