RNA–Protein interactions for RNA: ENST00000498540.2

TRAF4-212, Transcript of TNF receptor associated factor 4, humanhuman

TSL 3

Gene TRAF4, Length 748 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF4-212ENST00000498540 SLPIP03973 132 aa9.3□□□□□ -0.92
TRAF4-212ENST00000498540 SREK1IP1Q8N9Q2 155 aaPredicted RBP9.3□□□□□ -0.92
TRAF4-212ENST00000498540 DPH3Q96FX2 82 aa9.3□□□□□ -0.92
TRAF4-212ENST00000498540 NKX6-2Q9C056 277 aaPredicted RBP9.3□□□□□ -0.92
TRAF4-212ENST00000498540 VAX2Q9UIW0 290 aa9.3□□□□□ -0.92
TRAF4-212ENST00000498540 MUC21A0A0G2JKD1 596 aa9.29□□□□□ -0.92
TRAF4-212ENST00000498540 TRBV6-1A0A0K0K1D8 114 aa9.29□□□□□ -0.92
TRAF4-212ENST00000498540 MUC21A0A140T8X8 626 aa9.29□□□□□ -0.92
TRAF4-212ENST00000498540 PHOX2AO14813 284 aa9.29□□□□□ -0.92
TRAF4-212ENST00000498540 DEFA3P59666 94 aa9.29□□□□□ -0.92
TRAF4-212ENST00000498540 REG3AQ06141 175 aa9.29□□□□□ -0.92
TRAF4-212ENST00000498540 RPL7L1Q6DKI1 246 aaKnown RBP9.29□□□□□ -0.92
TRAF4-212ENST00000498540 RNF185Q96GF1 192 aa9.29□□□□□ -0.92
TRAF4-212ENST00000498540 DERL1Q9BUN8 251 aa9.29□□□□□ -0.92
TRAF4-212ENST00000498540 TRBV25-1A0A075B6N4 114 aa9.28□□□□□ -0.92
TRAF4-212ENST00000498540 F5H697 171 aa9.28□□□□□ -0.92
TRAF4-212ENST00000498540 TMEM97Q5BJF2 176 aa9.28□□□□□ -0.92
TRAF4-212ENST00000498540 ZNF471Q9BX82 626 aaPredicted RBP9.28□□□□□ -0.92
TRAF4-212ENST00000498540 IQCJQ1A5X6 159 aa9.27□□□□□ -0.93
TRAF4-212ENST00000498540 Q5BKY6 102 aa9.27□□□□□ -0.93
TRAF4-212ENST00000498540 C20orf203Q8NBC4 194 aa9.27□□□□□ -0.93
TRAF4-212ENST00000498540 LINC01600Q96MT4 127 aa9.27□□□□□ -0.93
TRAF4-212ENST00000498540 DPH3P1Q9H4G8 78 aa9.27□□□□□ -0.93
TRAF4-212ENST00000498540 PLAC8Q9NZF1 115 aa9.27□□□□□ -0.93
TRAF4-212ENST00000498540 ALG5Q9Y673 324 aa9.27□□□□□ -0.93
TRAF4-212ENST00000498540 KIF25-AS1Q9Y6Z4 181 aa9.27□□□□□ -0.93
TRAF4-212ENST00000498540 SNAI2O43623 268 aa9.26□□□□□ -0.93
TRAF4-212ENST00000498540 SSTP61278 116 aa9.26□□□□□ -0.93
TRAF4-212ENST00000498540 GFRA4Q9GZZ7 299 aa9.26□□□□□ -0.93
TRAF4-212ENST00000498540 AP5S1Q9NUS5 200 aa9.26□□□□□ -0.93
TRAF4-212ENST00000498540 TRAV16A0A0A6YYK6 109 aaPredicted RBP9.25□□□□□ -0.93
TRAF4-212ENST00000498540 MAP1LC3B2A6NCE7 125 aa9.25□□□□□ -0.93
TRAF4-212ENST00000498540 A6NHS1 94 aa9.25□□□□□ -0.93
TRAF4-212ENST00000498540 CXCL1P09341 107 aa9.25□□□□□ -0.93
TRAF4-212ENST00000498540 AKR1C3P42330 323 aa9.25□□□□□ -0.93
TRAF4-212ENST00000498540 RAB5CP51148 216 aa9.25□□□□□ -0.93
TRAF4-212ENST00000498540 DEFA1P59665 94 aa9.25□□□□□ -0.93
TRAF4-212ENST00000498540 SPANXN1Q5VSR9 72 aa9.25□□□□□ -0.93
TRAF4-212ENST00000498540 C7orf33Q8WU49 177 aa9.25□□□□□ -0.93
TRAF4-212ENST00000498540 SSBP4Q9BWG4 385 aaPredicted RBP9.25□□□□□ -0.93
TRAF4-212ENST00000498540 MAP1LC3BQ9GZQ8 125 aa9.25□□□□□ -0.93
TRAF4-212ENST00000498540 IGLV4-60A0A075B6I1 120 aa9.24□□□□□ -0.93
TRAF4-212ENST00000498540 TRAV8-4A0A0B4J246 113 aa9.24□□□□□ -0.93
TRAF4-212ENST00000498540 IGHV1-24A0A0C4DH33 117 aa9.24□□□□□ -0.93
TRAF4-212ENST00000498540 P01737 135 aa9.24□□□□□ -0.93
TRAF4-212ENST00000498540 OR5AL1P0C617 328 aa9.24□□□□□ -0.93
TRAF4-212ENST00000498540 PRR3P79522 188 aaKnown RBP9.24□□□□□ -0.93
TRAF4-212ENST00000498540 CST9LP1Q5W188 147 aa9.24□□□□□ -0.93
TRAF4-212ENST00000498540 BORCS7-ASMTA0A0B4J1R7 106 aa9.23□□□□□ -0.93
TRAF4-212ENST00000498540 FHITP49789 147 aa9.23□□□□□ -0.93
TRAF4-212ENST00000498540 AKR1C8PQ5T2L2 129 aa9.23□□□□□ -0.93
TRAF4-212ENST00000498540 STOML3Q8TAV4 291 aa9.23□□□□□ -0.93
TRAF4-212ENST00000498540 TCEAL7Q9BRU2 100 aa9.23□□□□□ -0.93
TRAF4-212ENST00000498540 SMIM17P0DL12 118 aa9.22□□□□□ -0.93
TRAF4-212ENST00000498540 COX6A2Q02221 97 aa9.22□□□□□ -0.93
TRAF4-212ENST00000498540 C15orf56Q8N910 161 aa9.22□□□□□ -0.93
TRAF4-212ENST00000498540 GTSF1Q8WW33 167 aa9.22□□□□□ -0.93
TRAF4-212ENST00000498540 AP1S3Q96PC3 154 aa9.22□□□□□ -0.93
TRAF4-212ENST00000498540 A0A0J9YXV3 536 aa9.21□□□□□ -0.94
TRAF4-212ENST00000498540 M0QY20 66 aa9.21□□□□□ -0.94
TRAF4-212ENST00000498540 WDR73Q6P4I2 378 aa9.21□□□□□ -0.94
TRAF4-212ENST00000498540 INO80EQ8NBZ0 244 aaPredicted RBP9.21□□□□□ -0.94
TRAF4-212ENST00000498540 MLST8Q9BVC4 326 aa9.21□□□□□ -0.94
TRAF4-212ENST00000498540 IGKV2-24A0A0C4DH68 120 aa9.2□□□□□ -0.94
TRAF4-212ENST00000498540 A0A1B0GUV1 79 aa9.2□□□□□ -0.94
TRAF4-212ENST00000498540 PAGE4O60829 102 aa9.2□□□□□ -0.94
TRAF4-212ENST00000498540 MGPP08493 103 aa9.2□□□□□ -0.94
TRAF4-212ENST00000498540 GZMBP10144 247 aa9.2□□□□□ -0.94
TRAF4-212ENST00000498540 MAJINQ3KP22 176 aa9.2□□□□□ -0.94
TRAF4-212ENST00000498540 PRSS3P2Q8NHM4 247 aa9.2□□□□□ -0.94
TRAF4-212ENST00000498540 TMEM243Q9BU79 118 aa9.2□□□□□ -0.94
TRAF4-212ENST00000498540 FXYD6-FXYD2A0A087WZ82 144 aa9.19□□□□□ -0.94
TRAF4-212ENST00000498540 SCO2A0A1W2PP80 73 aa9.19□□□□□ -0.94
TRAF4-212ENST00000498540 KRTAP10-8P60410 259 aa9.19□□□□□ -0.94
TRAF4-212ENST00000498540 SUMO4Q6EEV6 95 aa9.19□□□□□ -0.94
TRAF4-212ENST00000498540 LYPD6BQ8NI32 183 aa9.19□□□□□ -0.94
TRAF4-212ENST00000498540 MED28Q9H204 178 aa9.19□□□□□ -0.94
TRAF4-212ENST00000498540 NDUFS6O75380 124 aaKnown RBP9.18□□□□□ -0.94
TRAF4-212ENST00000498540 GAS8-AS1O95177 125 aa9.18□□□□□ -0.94
TRAF4-212ENST00000498540 NKX2-5P52952 324 aaPredicted RBP9.18□□□□□ -0.94
TRAF4-212ENST00000498540 HIGD2BQ4VC39 106 aa9.18□□□□□ -0.94
TRAF4-212ENST00000498540 BAGE2Q86Y30 109 aa9.18□□□□□ -0.94
TRAF4-212ENST00000498540 STPG4Q8N801 248 aa9.18□□□□□ -0.94
TRAF4-212ENST00000498540 GAGE12HA6NDE8 117 aa9.17□□□□□ -0.94
TRAF4-212ENST00000498540 H7C1H1 209 aa9.17□□□□□ -0.94
TRAF4-212ENST00000498540 S100A9P06702 114 aaKnown RBP9.17□□□□□ -0.94
TRAF4-212ENST00000498540 GIPP09681 153 aaPredicted RBP9.17□□□□□ -0.94
TRAF4-212ENST00000498540 RPS10P46783 165 aaKnown RBP9.17□□□□□ -0.94
TRAF4-212ENST00000498540 SULT1A2P50226 295 aa9.17□□□□□ -0.94
TRAF4-212ENST00000498540 A0A096LNI7 61 aa9.16□□□□□ -0.94
TRAF4-212ENST00000498540 IGKV3OR2-268A0A0C4DH90 116 aa9.15□□□□□ -0.94
TRAF4-212ENST00000498540 A0A1B0GV50 99 aa9.15□□□□□ -0.94
TRAF4-212ENST00000498540 CFAP161Q6P656 301 aa9.15□□□□□ -0.94
TRAF4-212ENST00000498540 SPINK6Q6UWN8 80 aa9.15□□□□□ -0.94
TRAF4-212ENST00000498540 PGLYRP4Q96LB8 373 aa9.15□□□□□ -0.94
TRAF4-212ENST00000498540 TPPP3Q9BW30 176 aa9.15□□□□□ -0.94
TRAF4-212ENST00000498540 CYTL1Q9NRR1 136 aa9.15□□□□□ -0.94
TRAF4-212ENST00000498540 UBE2L6O14933 153 aa9.14□□□□□ -0.95
TRAF4-212ENST00000498540 IGLC6P0CF74 106 aa9.14□□□□□ -0.95
TRAF4-212ENST00000498540 AMTP48728 403 aa9.14□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 77.2 ms