RNA–Protein interactions for RNA: ENST00000497984.5

SMC4-227, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 5

Gene SMC4, Length 563 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-227ENST00000497984 CCDC115Q96NT0 180 aa-0.38□□□□□ -2.47
SMC4-227ENST00000497984 LINC00846Q9NV44 126 aa-0.38□□□□□ -2.47
SMC4-227ENST00000497984 COA4Q9NYJ1 87 aa-0.38□□□□□ -2.47
SMC4-227ENST00000497984 CEP250Q9BV73 2442 aa-0.38□□□□□ -2.47
SMC4-227ENST00000497984 LRP5O75197 1615 aa-0.38□□□□□ -2.47
SMC4-227ENST00000497984 DMDP11532 3685 aa-0.39□□□□□ -2.47
SMC4-227ENST00000497984 CDH23Q9H251 3354 aa-0.39□□□□□ -2.47
SMC4-227ENST00000497984 RREB1Q92766 1687 aa-0.39□□□□□ -2.47
SMC4-227ENST00000497984 MED23Q9ULK4 1368 aa-0.39□□□□□ -2.47
SMC4-227ENST00000497984 KNTC1P50748 2209 aa-0.39□□□□□ -2.47
SMC4-227ENST00000497984 TRAV12-2A0A075B6T6 113 aa-0.39□□□□□ -2.47
SMC4-227ENST00000497984 GVQW2A0A096LPI5 108 aaPredicted RBP-0.39□□□□□ -2.47
SMC4-227ENST00000497984 MCRIP1C9JLW8 97 aa-0.39□□□□□ -2.47
SMC4-227ENST00000497984 IFNA21P01568 189 aa-0.39□□□□□ -2.47
SMC4-227ENST00000497984 BET1LQ9NYM9 111 aa-0.39□□□□□ -2.47
SMC4-227ENST00000497984 METTL1Q9UBP6 276 aaKnown RBP-0.39□□□□□ -2.47
SMC4-227ENST00000497984 SMPXQ9UHP9 88 aa-0.39□□□□□ -2.47
SMC4-227ENST00000497984 NDUFAF1Q9Y375 327 aa-0.39□□□□□ -2.47
SMC4-227ENST00000497984 ZCCHC11Q5TAX3 1644 aaKnown RBP-0.39□□□□□ -2.47
SMC4-227ENST00000497984 PNMA8CA0A1B0GUJ8 204 aa-0.4□□□□□ -2.47
SMC4-227ENST00000497984 PGRMC1O00264 195 aaKnown RBP-0.4□□□□□ -2.47
SMC4-227ENST00000497984 MT1HL1P0DM35 61 aa-0.4□□□□□ -2.47
SMC4-227ENST00000497984 OR9Q1Q8NGQ5 310 aa-0.4□□□□□ -2.47
SMC4-227ENST00000497984 BPESC1Q9GZL8 116 aa-0.4□□□□□ -2.47
SMC4-227ENST00000497984 WDFY3Q8IZQ1 3526 aa-0.4□□□□□ -2.47
SMC4-227ENST00000497984 ARHGAP31Q2M1Z3 1444 aa-0.4□□□□□ -2.47
SMC4-227ENST00000497984 SIPA1L2Q9P2F8 1722 aaPredicted RBP-0.41□□□□□ -2.47
SMC4-227ENST00000497984 CACNA1CQ13936 2221 aa-0.41□□□□□ -2.47
SMC4-227ENST00000497984 MED13LQ71F56 2210 aa-0.41□□□□□ -2.47
SMC4-227ENST00000497984 TANC1Q9C0D5 1861 aa-0.41□□□□□ -2.47
SMC4-227ENST00000497984 ABCA1O95477 2261 aa-0.41□□□□□ -2.47
SMC4-227ENST00000497984 CDK13Q14004 1512 aaKnown RBP-0.41□□□□□ -2.48
SMC4-227ENST00000497984 A0A087WTM6 91 aa-0.41□□□□□ -2.48
SMC4-227ENST00000497984 ZNF670-ZNF695F2Z2N8 137 aa-0.41□□□□□ -2.48
SMC4-227ENST00000497984 NMBP08949 121 aa-0.41□□□□□ -2.48
SMC4-227ENST00000497984 AKR1D1P51857 326 aa-0.41□□□□□ -2.48
SMC4-227ENST00000497984 HSD17B12Q53GQ0 312 aa-0.41□□□□□ -2.48
SMC4-227ENST00000497984 SLC25A26Q70HW3 274 aa-0.41□□□□□ -2.48
SMC4-227ENST00000497984 PPDPFLQ8WWR9 84 aa-0.41□□□□□ -2.48
SMC4-227ENST00000497984 UNC13BO14795 1591 aa-0.41□□□□□ -2.48
SMC4-227ENST00000497984 UTRNP46939 3433 aa-0.41□□□□□ -2.48
SMC4-227ENST00000497984 SPTBP11277 2137 aa-0.41□□□□□ -2.48
SMC4-227ENST00000497984 ANK1P16157 1881 aa-0.41□□□□□ -2.48
SMC4-227ENST00000497984 APOC1P02654 83 aa-0.42□□□□□ -2.48
SMC4-227ENST00000497984 ASIPP42127 132 aa-0.42□□□□□ -2.48
SMC4-227ENST00000497984 PLGLB1Q02325 96 aa-0.42□□□□□ -2.48
SMC4-227ENST00000497984 TMEM128Q5BJH2 165 aa-0.42□□□□□ -2.48
SMC4-227ENST00000497984 Q5VSD8 79 aa-0.42□□□□□ -2.48
SMC4-227ENST00000497984 SAMD13Q5VXD3 122 aa-0.42□□□□□ -2.48
SMC4-227ENST00000497984 OR2T2Q6IF00 324 aa-0.42□□□□□ -2.48
SMC4-227ENST00000497984 TOMM20LQ6UXN7 152 aa-0.42□□□□□ -2.48
SMC4-227ENST00000497984 PPP1R1CQ8WVI7 109 aa-0.42□□□□□ -2.48
SMC4-227ENST00000497984 ANKRD31Q8N7Z5 1873 aa-0.42□□□□□ -2.48
SMC4-227ENST00000497984 ACACAQ13085 2346 aa-0.42□□□□□ -2.48
SMC4-227ENST00000497984 SPTBN5Q9NRC6 3674 aaKnown RBP-0.43□□□□□ -2.48
SMC4-227ENST00000497984 A0A1B0GV72 72 aa-0.43□□□□□ -2.48
SMC4-227ENST00000497984 A0A1B0GW64 132 aa-0.43□□□□□ -2.48
SMC4-227ENST00000497984 MT-ND4LP03901 98 aa-0.43□□□□□ -2.48
SMC4-227ENST00000497984 FABP1P07148 127 aa-0.43□□□□□ -2.48
SMC4-227ENST00000497984 SLC25A6P12236 298 aa-0.43□□□□□ -2.48
SMC4-227ENST00000497984 IFITM1P13164 125 aa-0.43□□□□□ -2.48
SMC4-227ENST00000497984 HIST1H1BP16401 226 aaKnown RBP-0.43□□□□□ -2.48
SMC4-227ENST00000497984 PSPHP78330 225 aa-0.43□□□□□ -2.48
SMC4-227ENST00000497984 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa-0.43□□□□□ -2.48
SMC4-227ENST00000497984 TMEM91Q6ZNR0 172 aa-0.43□□□□□ -2.48
SMC4-227ENST00000497984 SLC35B3Q9H1N7 401 aa-0.43□□□□□ -2.48
SMC4-227ENST00000497984 TAS2R8Q9NYW2 309 aa-0.43□□□□□ -2.48
SMC4-227ENST00000497984 DNAJC15Q9Y5T4 150 aa-0.43□□□□□ -2.48
SMC4-227ENST00000497984 CENPFP49454 3210 aa-0.43□□□□□ -2.48
SMC4-227ENST00000497984 AKAP6Q13023 2319 aa-0.43□□□□□ -2.48
SMC4-227ENST00000497984 PLCE1Q9P212 2302 aa-0.43□□□□□ -2.48
SMC4-227ENST00000497984 BRCA2P51587 3418 aa-0.44□□□□□ -2.48
SMC4-227ENST00000497984 GOLGB1Q14789 3259 aaKnown RBP-0.44□□□□□ -2.48
SMC4-227ENST00000497984 TCRBV3S1A0A5B6 114 aa-0.44□□□□□ -2.48
SMC4-227ENST00000497984 KRTAP8-1Q8IUC2 63 aa-0.44□□□□□ -2.48
SMC4-227ENST00000497984 TMEM35BQ8NCS4 154 aa-0.44□□□□□ -2.48
SMC4-227ENST00000497984 SMIM11BQ8TCY0 68 aa-0.44□□□□□ -2.48
SMC4-227ENST00000497984 IFI27L1Q96BM0 104 aa-0.44□□□□□ -2.48
SMC4-227ENST00000497984 VPS25Q9BRG1 176 aa-0.44□□□□□ -2.48
SMC4-227ENST00000497984 SSC5DA1L4H1 1573 aa-0.45□□□□□ -2.48
SMC4-227ENST00000497984 LAMC3Q9Y6N6 1575 aa-0.45□□□□□ -2.48
SMC4-227ENST00000497984 KIDINS220Q9ULH0 1771 aa-0.45□□□□□ -2.48
SMC4-227ENST00000497984 DLEC1Q9Y238 1755 aa-0.45□□□□□ -2.48
SMC4-227ENST00000497984 SPTBN1Q01082 2364 aaKnown RBP-0.45□□□□□ -2.48
SMC4-227ENST00000497984 OVOS2A0A0G2JMS6 1433 aa-0.45□□□□□ -2.48
SMC4-227ENST00000497984 PTPRMP28827 1452 aa-0.45□□□□□ -2.48
SMC4-227ENST00000497984 MT1FP04733 61 aa-0.45□□□□□ -2.48
SMC4-227ENST00000497984 CENPHQ9H3R5 247 aa-0.45□□□□□ -2.48
SMC4-227ENST00000497984 CCDC171Q6TFL3 1326 aa-0.45□□□□□ -2.48
SMC4-227ENST00000497984 XIRP2A4UGR9 3374 aa-0.46□□□□□ -2.48
SMC4-227ENST00000497984 TRAV2A0A0B4J234 112 aa-0.46□□□□□ -2.48
SMC4-227ENST00000497984 RBAKDNA6NC62 111 aa-0.46□□□□□ -2.48
SMC4-227ENST00000497984 DPM2O94777 84 aa-0.46□□□□□ -2.48
SMC4-227ENST00000497984 PAEPP09466 180 aa-0.46□□□□□ -2.48
SMC4-227ENST00000497984 COX4I1P13073 169 aa-0.46□□□□□ -2.48
SMC4-227ENST00000497984 CCL3L1P16619 93 aa-0.46□□□□□ -2.48
SMC4-227ENST00000497984 NPC2P61916 151 aa-0.46□□□□□ -2.48
SMC4-227ENST00000497984 TFAMQ00059 246 aaKnown RBP-0.46□□□□□ -2.48
SMC4-227ENST00000497984 SPCS2Q15005 226 aa-0.46□□□□□ -2.48
SMC4-227ENST00000497984 SNX29P2Q8IUI4 249 aa-0.46□□□□□ -2.48
Retrieved 100 of 20,778 RNA–protein pairs in 75.9 ms