RNA–Protein interactions for RNA: ENST00000497849.1

VIM-208, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 634 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-208ENST00000497849 PRR27Q6MZM9 219 aa10.75□□□□□ -0.69
VIM-208ENST00000497849 BAALCQ8WXS3 180 aa10.75□□□□□ -0.69
VIM-208ENST00000497849 A0A087WWC5 75 aa10.74□□□□□ -0.69
VIM-208ENST00000497849 FABP5P3A8MUU1 101 aa10.74□□□□□ -0.69
VIM-208ENST00000497849 PFN1P07737 140 aaKnown RBP10.74□□□□□ -0.69
VIM-208ENST00000497849 FAM159AQ6UWV7 190 aa10.74□□□□□ -0.69
VIM-208ENST00000497849 COX8CQ7Z4L0 72 aa10.74□□□□□ -0.69
VIM-208ENST00000497849 OR4C5Q8NGB2 326 aa10.74□□□□□ -0.69
VIM-208ENST00000497849 SFRP2Q96HF1 295 aa10.74□□□□□ -0.69
VIM-208ENST00000497849 SPXQ9BT56 116 aa10.74□□□□□ -0.69
VIM-208ENST00000497849 IGKV3D-20A0A0C4DH25 116 aa10.73□□□□□ -0.69
VIM-208ENST00000497849 IGHV3-16A0A0C4DH30 117 aa10.73□□□□□ -0.69
VIM-208ENST00000497849 PPP1R2P9O14990 202 aa10.73□□□□□ -0.69
VIM-208ENST00000497849 GATA1P15976 413 aaPredicted RBP10.73□□□□□ -0.69
VIM-208ENST00000497849 ASIPP42127 132 aa10.73□□□□□ -0.69
VIM-208ENST00000497849 LELP1Q5T871 98 aa10.73□□□□□ -0.69
VIM-208ENST00000497849 C15orf54Q8N8G6 183 aa10.73□□□□□ -0.69
VIM-208ENST00000497849 OR10G8Q8NGN5 311 aa10.73□□□□□ -0.69
VIM-208ENST00000497849 ANAPC16Q96DE5 110 aa10.73□□□□□ -0.69
VIM-208ENST00000497849 CTDSP1Q9GZU7 261 aa10.73□□□□□ -0.69
VIM-208ENST00000497849 TMSB15BA0A087X1C1 80 aa10.72□□□□□ -0.69
VIM-208ENST00000497849 SCO1O75880 301 aa10.72□□□□□ -0.69
VIM-208ENST00000497849 TYMSP04818 313 aa10.72□□□□□ -0.69
VIM-208ENST00000497849 FAM162BQ5T6X4 162 aa10.72□□□□□ -0.69
VIM-208ENST00000497849 OSTCQ9NRP0 149 aa10.72□□□□□ -0.69
VIM-208ENST00000497849 TRAV8-3A0A0A6YYJ7 113 aa10.71□□□□□ -0.69
VIM-208ENST00000497849 GRIFINA4D1Z8 144 aa10.71□□□□□ -0.69
VIM-208ENST00000497849 RPL19P84098 196 aaKnown RBP10.71□□□□□ -0.69
VIM-208ENST00000497849 FAM231DQ6ZW35 169 aa10.71□□□□□ -0.69
VIM-208ENST00000497849 SMCO4Q9NRQ5 59 aa10.71□□□□□ -0.69
VIM-208ENST00000497849 SLC25A29Q8N8R3 303 aa10.7□□□□□ -0.7
VIM-208ENST00000497849 RNASE7Q9H1E1 156 aaKnown RBP10.7□□□□□ -0.7
VIM-208ENST00000497849 TMEM242Q9NWH2 141 aa10.7□□□□□ -0.7
VIM-208ENST00000497849 C19orf71A6NCJ1 209 aa10.69□□□□□ -0.7
VIM-208ENST00000497849 GATCO43716 136 aaKnown RBP10.69□□□□□ -0.7
VIM-208ENST00000497849 DAZ4Q86SG3 579 aaKnown RBP10.69□□□□□ -0.7
VIM-208ENST00000497849 Q8N976 141 aa10.69□□□□□ -0.7
VIM-208ENST00000497849 NUDT10Q8NFP7 164 aa10.69□□□□□ -0.7
VIM-208ENST00000497849 NUDT11Q96G61 164 aa10.69□□□□□ -0.7
VIM-208ENST00000497849 DAZ3Q9NR90 486 aaKnown RBP10.69□□□□□ -0.7
VIM-208ENST00000497849 TRGV11A0A075B6L2 103 aa10.68□□□□□ -0.7
VIM-208ENST00000497849 M0R2P5 195 aa10.68□□□□□ -0.7
VIM-208ENST00000497849 P01737 135 aa10.68□□□□□ -0.7
VIM-208ENST00000497849 CBLN2Q8IUK8 224 aa10.68□□□□□ -0.7
VIM-208ENST00000497849 KCNS1Q96KK3 526 aa10.68□□□□□ -0.7
VIM-208ENST00000497849 GTSF1LQ9H1H1 148 aa10.68□□□□□ -0.7
VIM-208ENST00000497849 LINC01559Q495D7 138 aa10.67□□□□□ -0.7
VIM-208ENST00000497849 ATP6V0E2Q8NHE4 81 aa10.67□□□□□ -0.7
VIM-208ENST00000497849 RPP21Q9H633 154 aaKnown RBP10.67□□□□□ -0.7
VIM-208ENST00000497849 V9GYV3 84 aa10.67□□□□□ -0.7
VIM-208ENST00000497849 GZMBP10144 247 aa10.66□□□□□ -0.7
VIM-208ENST00000497849 DNAJC30Q96LL9 226 aa10.66□□□□□ -0.7
VIM-208ENST00000497849 COX11Q9Y6N1 276 aa10.66□□□□□ -0.7
VIM-208ENST00000497849 RNASE3P12724 160 aaKnown RBP10.65□□□□□ -0.7
VIM-208ENST00000497849 S100PP25815 95 aa10.65□□□□□ -0.7
VIM-208ENST00000497849 RHOHQ15669 191 aa10.65□□□□□ -0.7
VIM-208ENST00000497849 CT83Q5H943 113 aa10.65□□□□□ -0.7
VIM-208ENST00000497849 Q6ZRU5 148 aa10.65□□□□□ -0.7
VIM-208ENST00000497849 OR2D3Q8NGH3 330 aa10.65□□□□□ -0.7
VIM-208ENST00000497849 IMMP2LQ96T52 175 aa10.65□□□□□ -0.7
VIM-208ENST00000497849 PRADC1Q9BSG0 188 aa10.65□□□□□ -0.7
VIM-208ENST00000497849 IL36BQ9NZH7 164 aa10.65□□□□□ -0.7
VIM-208ENST00000497849 TRBV6-4A0A1B0GX49 114 aa10.64□□□□□ -0.71
VIM-208ENST00000497849 H3BVH4 76 aa10.64□□□□□ -0.71
VIM-208ENST00000497849 ARMS2P0C7Q2 107 aa10.64□□□□□ -0.71
VIM-208ENST00000497849 S100A4P26447 101 aaKnown RBP10.64□□□□□ -0.71
VIM-208ENST00000497849 KCNIP4Q6PIL6 250 aa10.64□□□□□ -0.71
VIM-208ENST00000497849 C9orf85Q96MD7 179 aa10.64□□□□□ -0.71
VIM-208ENST00000497849 MUC21A0A0G2JKD1 596 aa10.63□□□□□ -0.71
VIM-208ENST00000497849 MUC21A0A140T8X8 626 aa10.63□□□□□ -0.71
VIM-208ENST00000497849 A8MWL6 223 aa10.63□□□□□ -0.71
VIM-208ENST00000497849 RPS20P60866 119 aaKnown RBP10.63□□□□□ -0.71
VIM-208ENST00000497849 URGCP-MRPS24S4R325 110 aa10.63□□□□□ -0.71
VIM-208ENST00000497849 XKRY2A2RUG3 117 aa10.62□□□□□ -0.71
VIM-208ENST00000497849 SSTP61278 116 aa10.62□□□□□ -0.71
VIM-208ENST00000497849 TSKUQ8WUA8 353 aa10.62□□□□□ -0.71
VIM-208ENST00000497849 IGKV2D-24A0A075B6R9 120 aa10.61□□□□□ -0.71
VIM-208ENST00000497849 IGHV3-73A0A0B4J1V6 119 aa10.61□□□□□ -0.71
VIM-208ENST00000497849 SMIM27A0A1W2PRY6 76 aa10.61□□□□□ -0.71
VIM-208ENST00000497849 DNLZQ5SXM8 178 aa10.61□□□□□ -0.71
VIM-208ENST00000497849 CFAP126Q5VTH2 177 aa10.61□□□□□ -0.71
VIM-208ENST00000497849 RMI2Q96E14 147 aa10.61□□□□□ -0.71
VIM-208ENST00000497849 GFRA4Q9GZZ7 299 aa10.61□□□□□ -0.71
VIM-208ENST00000497849 FAM231BA6NCW3 169 aa10.6□□□□□ -0.71
VIM-208ENST00000497849 ODF1Q14990 250 aa10.6□□□□□ -0.71
VIM-208ENST00000497849 ELOBQ15370 118 aa10.6□□□□□ -0.71
VIM-208ENST00000497849 SREK1IP1Q8N9Q2 155 aaPredicted RBP10.6□□□□□ -0.71
VIM-208ENST00000497849 YPEL4Q96NS1 127 aa10.6□□□□□ -0.71
VIM-208ENST00000497849 TRAV9-1A0A075B6T8 112 aa10.59□□□□□ -0.71
VIM-208ENST00000497849 ZNF876PQ49A33 203 aa10.59□□□□□ -0.71
VIM-208ENST00000497849 DMRTA1Q5VZB9 504 aa10.59□□□□□ -0.71
VIM-208ENST00000497849 BTF3L4Q96K17 158 aa10.59□□□□□ -0.71
VIM-208ENST00000497849 TPPP3Q9BW30 176 aa10.59□□□□□ -0.71
VIM-208ENST00000497849 JPT2Q9H910 190 aa10.59□□□□□ -0.71
VIM-208ENST00000497849 NAT8BQ9UHF3 227 aa10.59□□□□□ -0.71
VIM-208ENST00000497849 TRBV24-1A0A075B6N3 115 aa10.58□□□□□ -0.72
VIM-208ENST00000497849 TGIF2-C20orf24A0A0A6YYL0 155 aa10.58□□□□□ -0.72
VIM-208ENST00000497849 COLCA2A8K830 154 aa10.58□□□□□ -0.72
VIM-208ENST00000497849 CIDEAO60543 219 aa10.58□□□□□ -0.72
VIM-208ENST00000497849 LINC00694P0DN24 101 aa10.58□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms