RNA–Protein interactions for RNA: ENST00000493341.1

VPS13A-212, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,001 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-212ENST00000493341 KRTAP6-3Q3LI67 103 aa2.05□□□□□ -2.08
VPS13A-212ENST00000493341 FAM19A2Q8N3H0 131 aa2.05□□□□□ -2.08
VPS13A-212ENST00000493341 KIAA1549Q9HCM3 1950 aa2.04□□□□□ -2.08
VPS13A-212ENST00000493341 SDK1Q7Z5N4 2213 aa2.04□□□□□ -2.08
VPS13A-212ENST00000493341 EFCAB10A6NFE3 127 aa2.04□□□□□ -2.08
VPS13A-212ENST00000493341 HLA-DRB4P13762 266 aa2.04□□□□□ -2.08
VPS13A-212ENST00000493341 MIR22HGQ0VDD5 57 aa2.04□□□□□ -2.08
VPS13A-212ENST00000493341 PCOTHQ58A44 107 aa2.04□□□□□ -2.08
VPS13A-212ENST00000493341 CASC2Q6XLA1 102 aa2.04□□□□□ -2.08
VPS13A-212ENST00000493341 TEN1Q86WV5 123 aa2.04□□□□□ -2.08
VPS13A-212ENST00000493341 LINC00269Q8N2A0 174 aa2.04□□□□□ -2.08
VPS13A-212ENST00000493341 DEFB124Q8NES8 71 aa2.04□□□□□ -2.08
VPS13A-212ENST00000493341 ORMDL1Q9P0S3 153 aa2.04□□□□□ -2.08
VPS13A-212ENST00000493341 HLA-DRB4X5D2U9 266 aa2.04□□□□□ -2.08
VPS13A-212ENST00000493341 USP24Q9UPU5 2620 aa2.04□□□□□ -2.08
VPS13A-212ENST00000493341 CNOT1A5YKK6 2376 aaKnown RBP2.04□□□□□ -2.08
VPS13A-212ENST00000493341 AKAP13Q12802 2813 aa2.03□□□□□ -2.08
VPS13A-212ENST00000493341 CD14P08571 375 aa2.03□□□□□ -2.08
VPS13A-212ENST00000493341 ETV6P41212 452 aa2.03□□□□□ -2.08
VPS13A-212ENST00000493341 KRTAP12-1P59990 96 aa2.03□□□□□ -2.08
VPS13A-212ENST00000493341 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP2.03□□□□□ -2.08
VPS13A-212ENST00000493341 FOXI2Q6ZQN5 318 aa2.03□□□□□ -2.08
VPS13A-212ENST00000493341 DEFB119Q8N690 84 aa2.03□□□□□ -2.08
VPS13A-212ENST00000493341 PATE1Q8WXA2 126 aa2.03□□□□□ -2.08
VPS13A-212ENST00000493341 CDC42SE1Q9NRR8 79 aa2.03□□□□□ -2.08
VPS13A-212ENST00000493341 U3KQA8 63 aa2.03□□□□□ -2.08
VPS13A-212ENST00000493341 FREM3P0C091 2139 aa2.03□□□□□ -2.08
VPS13A-212ENST00000493341 MAP1BP46821 2468 aaKnown RBP2.03□□□□□ -2.08
VPS13A-212ENST00000493341 NCOR2Q9Y618 2525 aa2.03□□□□□ -2.08
VPS13A-212ENST00000493341 SPTY2D1-AS1A0A0U1RR47 76 aa2.03□□□□□ -2.08
VPS13A-212ENST00000493341 SPAARA0A1B0GVQ0 90 aa2.03□□□□□ -2.08
VPS13A-212ENST00000493341 CCL4P13236 92 aa2.03□□□□□ -2.08
VPS13A-212ENST00000493341 OTOSQ8NHW6 89 aa2.03□□□□□ -2.08
VPS13A-212ENST00000493341 SNRNP25Q9BV90 132 aaKnown RBP2.03□□□□□ -2.08
VPS13A-212ENST00000493341 DNAJC15Q9Y5T4 150 aa2.03□□□□□ -2.08
VPS13A-212ENST00000493341 ACACBO00763 2458 aa2.02□□□□□ -2.09
VPS13A-212ENST00000493341 INTS1Q8N201 2190 aaKnown RBP2.02□□□□□ -2.09
VPS13A-212ENST00000493341 EDF1O60869 148 aaKnown RBP2.02□□□□□ -2.09
VPS13A-212ENST00000493341 KRTAP5-8O75690 187 aa2.02□□□□□ -2.09
VPS13A-212ENST00000493341 RPS25P62851 125 aaKnown RBP2.02□□□□□ -2.09
VPS13A-212ENST00000493341 CLLU1Q5K131 121 aa2.02□□□□□ -2.09
VPS13A-212ENST00000493341 KRTAP26-1Q6PEX3 210 aa2.02□□□□□ -2.09
VPS13A-212ENST00000493341 ZCCHC23Q6ZST2 131 aa2.02□□□□□ -2.09
VPS13A-212ENST00000493341 C10orf111Q8N326 155 aa2.02□□□□□ -2.09
VPS13A-212ENST00000493341 ZNF563Q8TA94 476 aa2.02□□□□□ -2.09
VPS13A-212ENST00000493341 LINC00052Q96N35 136 aa2.02□□□□□ -2.09
VPS13A-212ENST00000493341 METTL1Q9UBP6 276 aaKnown RBP2.02□□□□□ -2.09
VPS13A-212ENST00000493341 DNAH14Q0VDD8 3507 aa2.02□□□□□ -2.09
VPS13A-212ENST00000493341 ARFGEF3Q5TH69 2177 aa2.02□□□□□ -2.09
VPS13A-212ENST00000493341 ASXL3Q9C0F0 2248 aa2.02□□□□□ -2.09
VPS13A-212ENST00000493341 OBSCNQ5VST9 7968 aa2.02□□□□□ -2.09
VPS13A-212ENST00000493341 FAM236AA0A1B0GUQ0 79 aa2.01□□□□□ -2.09
VPS13A-212ENST00000493341 FAM236BA0A1B0GV22 79 aa2.01□□□□□ -2.09
VPS13A-212ENST00000493341 TSPAN19P0C672 248 aa2.01□□□□□ -2.09
VPS13A-212ENST00000493341 NEDD8Q15843 81 aa2.01□□□□□ -2.09
VPS13A-212ENST00000493341 NAA38Q9BRA0 125 aaKnown RBP2.01□□□□□ -2.09
VPS13A-212ENST00000493341 SLC35B3Q9H1N7 401 aa2.01□□□□□ -2.09
VPS13A-212ENST00000493341 ERG28Q9UKR5 140 aa2.01□□□□□ -2.09
VPS13A-212ENST00000493341 ITPR1Q14643 2758 aa2.01□□□□□ -2.09
VPS13A-212ENST00000493341 KNL1Q8NG31 2342 aa2.01□□□□□ -2.09
VPS13A-212ENST00000493341 HIVEP2P31629 2446 aa2.01□□□□□ -2.09
VPS13A-212ENST00000493341 CACNA1BQ00975 2339 aa2.01□□□□□ -2.09
VPS13A-212ENST00000493341 COX7CP15954 63 aa2.01□□□□□ -2.09
VPS13A-212ENST00000493341 COPZ1P61923 177 aa2.01□□□□□ -2.09
VPS13A-212ENST00000493341 NCBP2-AS2Q69YL0 99 aa2.01□□□□□ -2.09
VPS13A-212ENST00000493341 COX14Q96I36 57 aa2.01□□□□□ -2.09
VPS13A-212ENST00000493341 KRTAP4-3Q9BYR4 195 aa2.01□□□□□ -2.09
VPS13A-212ENST00000493341 CHD8Q9HCK8 2581 aa2.01□□□□□ -2.09
VPS13A-212ENST00000493341 CEP295Q9C0D2 2601 aa2.01□□□□□ -2.09
VPS13A-212ENST00000493341 GOLGA4Q13439 2230 aaKnown RBP2.01□□□□□ -2.09
VPS13A-212ENST00000493341 EPG5Q9HCE0 2579 aa2□□□□□ -2.09
VPS13A-212ENST00000493341 SPTBN2O15020 2390 aa2□□□□□ -2.09
VPS13A-212ENST00000493341 FRYQ5TBA9 3013 aa2□□□□□ -2.09
VPS13A-212ENST00000493341 KNTC1P50748 2209 aa2□□□□□ -2.09
VPS13A-212ENST00000493341 UNC13CQ8NB66 2214 aa2□□□□□ -2.09
VPS13A-212ENST00000493341 IGHV1-24A0A0C4DH33 117 aa2□□□□□ -2.09
VPS13A-212ENST00000493341 PNMA8CA0A1B0GUJ8 204 aa2□□□□□ -2.09
VPS13A-212ENST00000493341 MRPS14O60783 128 aaKnown RBP2□□□□□ -2.09
VPS13A-212ENST00000493341 SULT1C4O75897 302 aa2□□□□□ -2.09
VPS13A-212ENST00000493341 DNAL4O96015 105 aa2□□□□□ -2.09
VPS13A-212ENST00000493341 RBP4P02753 201 aa2□□□□□ -2.09
VPS13A-212ENST00000493341 CD3DP04234 171 aa2□□□□□ -2.09
VPS13A-212ENST00000493341 LCE3AQ5TA76 89 aa2□□□□□ -2.09
VPS13A-212ENST00000493341 CIB3Q96Q77 187 aaPredicted RBP2□□□□□ -2.09
VPS13A-212ENST00000493341 SMIM7Q9BQ49 75 aa2□□□□□ -2.09
VPS13A-212ENST00000493341 MPC1Q9Y5U8 109 aa2□□□□□ -2.09
VPS13A-212ENST00000493341 SNURFQ9Y675 71 aa2□□□□□ -2.09
VPS13A-212ENST00000493341 PKD1L2Q7Z442 2459 aa2□□□□□ -2.09
VPS13A-212ENST00000493341 CHD6Q8TD26 2715 aa2□□□□□ -2.09
VPS13A-212ENST00000493341 ANKRD11Q6UB99 2663 aaPredicted RBP2□□□□□ -2.09
VPS13A-212ENST00000493341 DMXL2Q8TDJ6 3036 aa2□□□□□ -2.09
VPS13A-212ENST00000493341 TPRP12270 2363 aaKnown RBP2□□□□□ -2.09
VPS13A-212ENST00000493341 ZZEF1O43149 2961 aa2□□□□□ -2.09
VPS13A-212ENST00000493341 FAM208BQ5VWN6 2430 aa2□□□□□ -2.09
VPS13A-212ENST00000493341 LOC285095A0A1B0GVY8 99 aa2□□□□□ -2.09
VPS13A-212ENST00000493341 K7EP13 123 aa2□□□□□ -2.09
VPS13A-212ENST00000493341 M0R129 80 aa2□□□□□ -2.09
VPS13A-212ENST00000493341 NPFFO15130 113 aa2□□□□□ -2.09
VPS13A-212ENST00000493341 TNFP01375 233 aa2□□□□□ -2.09
VPS13A-212ENST00000493341 SPINT3P49223 89 aa2□□□□□ -2.09
Retrieved 100 of 20,778 RNA–protein pairs in 66.9 ms