RNA–Protein interactions for RNA: ENST00000490689.3

SHOX2-205, Transcript of short stature homeobox 2, humanhuman

TSL 5

Gene SHOX2, Length 4,184 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2-205ENST00000490689 CRPP02741 224 aa9.74□□□□□ -0.85
SHOX2-205ENST00000490689 MAPK1IP1LQ8NDC0 245 aa9.74□□□□□ -0.85
SHOX2-205ENST00000490689 HIVEP2P31629 2446 aa9.74□□□□□ -0.85
SHOX2-205ENST00000490689 PKD1L2Q7Z442 2459 aa9.73□□□□□ -0.85
SHOX2-205ENST00000490689 IGHV1-69P01742 117 aa9.73□□□□□ -0.85
SHOX2-205ENST00000490689 MRGPRG-AS1Q2M3A8 158 aa9.73□□□□□ -0.85
SHOX2-205ENST00000490689 AJUBAQ96IF1 538 aa9.73□□□□□ -0.85
SHOX2-205ENST00000490689 XCL2Q9UBD3 114 aa9.73□□□□□ -0.85
SHOX2-205ENST00000490689 ICOSQ9Y6W8 199 aa9.73□□□□□ -0.85
SHOX2-205ENST00000490689 LY6LH3BQJ8 138 aa9.73□□□□□ -0.85
SHOX2-205ENST00000490689 HOXD3P31249 432 aaPredicted RBP9.73□□□□□ -0.85
SHOX2-205ENST00000490689 ZFAND3Q9H8U3 227 aa9.73□□□□□ -0.85
SHOX2-205ENST00000490689 POLQO75417 2590 aa9.73□□□□□ -0.85
SHOX2-205ENST00000490689 UCNP55089 124 aa9.72□□□□□ -0.85
SHOX2-205ENST00000490689 SRSF2Q01130 221 aaKnown RBP9.72□□□□□ -0.85
SHOX2-205ENST00000490689 SLC25A29Q8N8R3 303 aa9.72□□□□□ -0.85
SHOX2-205ENST00000490689 PIFOQ8TCI5 191 aa9.72□□□□□ -0.85
SHOX2-205ENST00000490689 FAM236AA0A1B0GUQ0 79 aa9.72□□□□□ -0.85
SHOX2-205ENST00000490689 FAM236BA0A1B0GV22 79 aa9.72□□□□□ -0.85
SHOX2-205ENST00000490689 NDUFV3P56181 108 aaKnown RBP9.72□□□□□ -0.85
SHOX2-205ENST00000490689 ZNRF2Q8NHG8 242 aa9.72□□□□□ -0.85
SHOX2-205ENST00000490689 CHCHD5Q9BSY4 110 aa9.72□□□□□ -0.85
SHOX2-205ENST00000490689 Q9H8V8 135 aa9.72□□□□□ -0.85
SHOX2-205ENST00000490689 MAP1AP78559 2803 aaPredicted RBP9.72□□□□□ -0.85
SHOX2-205ENST00000490689 TRAV4A0A0B4J268 109 aa9.71□□□□□ -0.85
SHOX2-205ENST00000490689 P0DMU3 169 aa9.71□□□□□ -0.85
SHOX2-205ENST00000490689 FAM231AP0DMU4 169 aa9.71□□□□□ -0.85
SHOX2-205ENST00000490689 FAM231CP0DMU5 169 aa9.71□□□□□ -0.85
SHOX2-205ENST00000490689 NFE4Q86UQ8 179 aa9.71□□□□□ -0.85
SHOX2-205ENST00000490689 RHODO00212 210 aa9.71□□□□□ -0.85
SHOX2-205ENST00000490689 PFN2P35080 140 aa9.71□□□□□ -0.85
SHOX2-205ENST00000490689 ZNF415Q09FC8 603 aa9.71□□□□□ -0.85
SHOX2-205ENST00000490689 IGHV3-30-3P0DP02 117 aa9.71□□□□□ -0.86
SHOX2-205ENST00000490689 HERV-K104P63124 156 aa9.71□□□□□ -0.86
SHOX2-205ENST00000490689 TIMM17AQ99595 171 aa9.71□□□□□ -0.86
SHOX2-205ENST00000490689 STHQ8IWL8 128 aa9.71□□□□□ -0.86
SHOX2-205ENST00000490689 ZFAND2AQ8N6M9 145 aa9.71□□□□□ -0.86
SHOX2-205ENST00000490689 CFHR3Q02985 330 aa9.7□□□□□ -0.86
SHOX2-205ENST00000490689 ZMAT4Q9H898 229 aa9.7□□□□□ -0.86
SHOX2-205ENST00000490689 RAI1Q7Z5J4 1906 aaPredicted RBP9.7□□□□□ -0.86
SHOX2-205ENST00000490689 RPL36AP83881 106 aaKnown RBP9.7□□□□□ -0.86
SHOX2-205ENST00000490689 RHOHQ15669 191 aa9.7□□□□□ -0.86
SHOX2-205ENST00000490689 C5orf56Q8N8D9 126 aa9.7□□□□□ -0.86
SHOX2-205ENST00000490689 RPL36ALQ969Q0 106 aaKnown RBP9.7□□□□□ -0.86
SHOX2-205ENST00000490689 TRBV10-2A0A0K0K1G8 114 aa9.7□□□□□ -0.86
SHOX2-205ENST00000490689 A8MZ25 164 aa9.7□□□□□ -0.86
SHOX2-205ENST00000490689 ABCA12Q86UK0 2595 aa9.7□□□□□ -0.86
SHOX2-205ENST00000490689 CRIP2P52943 208 aaPredicted RBP9.69□□□□□ -0.86
SHOX2-205ENST00000490689 Q8NA96 180 aa9.69□□□□□ -0.86
SHOX2-205ENST00000490689 IGHV3-33P01772 117 aa9.69□□□□□ -0.86
SHOX2-205ENST00000490689 CITED1Q99966 193 aa9.69□□□□□ -0.86
SHOX2-205ENST00000490689 CNFNQ9BYD5 112 aa9.69□□□□□ -0.86
SHOX2-205ENST00000490689 BAALC-AS2P0C853 105 aa9.68□□□□□ -0.86
SHOX2-205ENST00000490689 IGHV4-38-2P0DP08 117 aa9.68□□□□□ -0.86
SHOX2-205ENST00000490689 F8W735 103 aaPredicted RBP9.68□□□□□ -0.86
SHOX2-205ENST00000490689 C20orf203Q8NBC4 194 aa9.68□□□□□ -0.86
SHOX2-205ENST00000490689 TRGV4A0A0C4DH28 118 aa9.68□□□□□ -0.86
SHOX2-205ENST00000490689 A0A0J9YXY3 114 aa9.68□□□□□ -0.86
SHOX2-205ENST00000490689 TINCRA0A1B0GVN0 87 aa9.67□□□□□ -0.86
SHOX2-205ENST00000490689 RBMY1BA6NDE4 496 aaKnown RBP9.67□□□□□ -0.86
SHOX2-205ENST00000490689 RBMY1EA6NEQ0 496 aaKnown RBP9.67□□□□□ -0.86
SHOX2-205ENST00000490689 ODF3BA8MYP8 253 aa9.67□□□□□ -0.86
SHOX2-205ENST00000490689 IGHV3-30P01768 117 aa9.67□□□□□ -0.86
SHOX2-205ENST00000490689 RBMY1DP0C7P1 496 aaKnown RBP9.67□□□□□ -0.86
SHOX2-205ENST00000490689 RBMY1A1P0DJD3 496 aaKnown RBP9.67□□□□□ -0.86
SHOX2-205ENST00000490689 RBMY1CP0DJD4 496 aa9.67□□□□□ -0.86
SHOX2-205ENST00000490689 IGHV3-30-5P0DP03 117 aa9.67□□□□□ -0.86
SHOX2-205ENST00000490689 REV3LO60673 3130 aa9.67□□□□□ -0.86
SHOX2-205ENST00000490689 CCDC179H3BU77 68 aa9.67□□□□□ -0.86
SHOX2-205ENST00000490689 MRPL23Q16540 153 aaKnown RBP9.67□□□□□ -0.86
SHOX2-205ENST00000490689 JMJD1CQ15652 2540 aa9.67□□□□□ -0.86
SHOX2-205ENST00000490689 TRIAP1O43715 76 aa9.67□□□□□ -0.86
SHOX2-205ENST00000490689 DEFB136Q30KP8 78 aa9.67□□□□□ -0.86
SHOX2-205ENST00000490689 GATA3P23771 443 aa9.66□□□□□ -0.86
SHOX2-205ENST00000490689 K7ENP7 123 aa9.66□□□□□ -0.86
SHOX2-205ENST00000490689 LGALS9O00182 355 aa9.66□□□□□ -0.86
SHOX2-205ENST00000490689 TNFRSF13BO14836 293 aaPredicted RBP9.66□□□□□ -0.86
SHOX2-205ENST00000490689 IGHG4P01861 327 aa9.66□□□□□ -0.86
SHOX2-205ENST00000490689 PIEZO1Q92508 2521 aa9.66□□□□□ -0.86
SHOX2-205ENST00000490689 RNASE3P12724 160 aaKnown RBP9.65□□□□□ -0.86
SHOX2-205ENST00000490689 ZNF22P17026 224 aaPredicted RBP9.65□□□□□ -0.86
SHOX2-205ENST00000490689 PRO3102Q9H379 93 aa9.65□□□□□ -0.86
SHOX2-205ENST00000490689 IGLV2-18A0A075B6J9 118 aa9.65□□□□□ -0.86
SHOX2-205ENST00000490689 C6orf226Q5I0X4 101 aa9.65□□□□□ -0.86
SHOX2-205ENST00000490689 SIRPDQ9H106 197 aa9.65□□□□□ -0.86
SHOX2-205ENST00000490689 PRRC2AP48634 2157 aaKnown RBP9.65□□□□□ -0.86
SHOX2-205ENST00000490689 IGKV3D-7A0A0C4DH55 119 aa9.64□□□□□ -0.87
SHOX2-205ENST00000490689 CLPSL1A2RUU4 121 aa9.64□□□□□ -0.87
SHOX2-205ENST00000490689 TSPEAR-AS2P59090 65 aa9.64□□□□□ -0.87
SHOX2-205ENST00000490689 PEMTQ9UBM1 199 aa9.64□□□□□ -0.87
SHOX2-205ENST00000490689 INAFM2P0DMQ5 153 aa9.64□□□□□ -0.87
SHOX2-205ENST00000490689 GNLYP22749 145 aa9.64□□□□□ -0.87
SHOX2-205ENST00000490689 UBE2D1P51668 147 aa9.64□□□□□ -0.87
SHOX2-205ENST00000490689 IGHV4-59P01825 116 aa9.64□□□□□ -0.87
SHOX2-205ENST00000490689 MTORP42345 2549 aa9.63□□□□□ -0.87
SHOX2-205ENST00000490689 IGHV4-61A0A0C4DH41 118 aa9.63□□□□□ -0.87
SHOX2-205ENST00000490689 NXPH4O95158 308 aa9.63□□□□□ -0.87
SHOX2-205ENST00000490689 PROK1P58294 105 aa9.63□□□□□ -0.87
SHOX2-205ENST00000490689 CDIP1Q9H305 208 aa9.63□□□□□ -0.87
SHOX2-205ENST00000490689 BOD1L1Q8NFC6 3051 aa9.63□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms