RNA–Protein interactions for RNA: ENST00000489045.5

COL9A3-213, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 838 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-213ENST00000489045 IFNA1P01562 189 aa15.18■□□□□ 0.02
COL9A3-213ENST00000489045 SMIM17P0DL12 118 aa15.18■□□□□ 0.02
COL9A3-213ENST00000489045 SLC51BQ86UW2 128 aa15.18■□□□□ 0.02
COL9A3-213ENST00000489045 OR2D3Q8NGH3 330 aa15.18■□□□□ 0.02
COL9A3-213ENST00000489045 DAZAP1Q96EP5 407 aaKnown RBP15.18■□□□□ 0.02
COL9A3-213ENST00000489045 FAM30AQ9NZY2 134 aa15.18■□□□□ 0.02
COL9A3-213ENST00000489045 C19orf71A6NCJ1 209 aa15.17■□□□□ 0.02
COL9A3-213ENST00000489045 TMEM262E9PQX1 116 aa15.17■□□□□ 0.02
COL9A3-213ENST00000489045 C1QBP02746 253 aa15.17■□□□□ 0.02
COL9A3-213ENST00000489045 IGLC6P0CF74 106 aa15.17■□□□□ 0.02
COL9A3-213ENST00000489045 FER1L6-AS1Q8NA97 138 aa15.17■□□□□ 0.02
COL9A3-213ENST00000489045 SMIM12Q96EX1 92 aa15.17■□□□□ 0.02
COL9A3-213ENST00000489045 DNAH8Q96JB1 4490 aa15.17■□□□□ 0.02
COL9A3-213ENST00000489045 INAFM2P0DMQ5 153 aa15.16■□□□□ 0.02
COL9A3-213ENST00000489045 BCL2P10415 239 aa15.16■□□□□ 0.02
COL9A3-213ENST00000489045 RPS20P60866 119 aaKnown RBP15.16■□□□□ 0.02
COL9A3-213ENST00000489045 SREK1IP1Q8N9Q2 155 aaPredicted RBP15.16■□□□□ 0.02
COL9A3-213ENST00000489045 MED9Q9NWA0 146 aa15.16■□□□□ 0.02
COL9A3-213ENST00000489045 VPS13BQ7Z7G8 4022 aa15.15■□□□□ 0.02
COL9A3-213ENST00000489045 TRBV20OR9-2A0A075B6H5 130 aa15.15■□□□□ 0.02
COL9A3-213ENST00000489045 MPV17L2Q567V2 206 aa15.15■□□□□ 0.02
COL9A3-213ENST00000489045 SRRM2Q9UQ35 2752 aaKnown RBP15.14■□□□□ 0.01
COL9A3-213ENST00000489045 ATRAIDQ6UW56 229 aa15.14■□□□□ 0.01
COL9A3-213ENST00000489045 VAX2Q9UIW0 290 aa15.14■□□□□ 0.01
COL9A3-213ENST00000489045 P01737 135 aa15.13■□□□□ 0.01
COL9A3-213ENST00000489045 MGPP08493 103 aa15.13■□□□□ 0.01
COL9A3-213ENST00000489045 Q0VG73 95 aa15.13■□□□□ 0.01
COL9A3-213ENST00000489045 C15orf54Q8N8G6 183 aa15.13■□□□□ 0.01
COL9A3-213ENST00000489045 CHCHD5Q9BSY4 110 aa15.13■□□□□ 0.01
COL9A3-213ENST00000489045 CACNG7P62955 275 aa15.12■□□□□ 0.01
COL9A3-213ENST00000489045 Q6ZNX1 250 aa15.12■□□□□ 0.01
COL9A3-213ENST00000489045 NTM-AS1Q6ZSK4 140 aa15.12■□□□□ 0.01
COL9A3-213ENST00000489045 Q8N976 141 aa15.12■□□□□ 0.01
COL9A3-213ENST00000489045 XKRY2A2RUG3 117 aa15.11■□□□□ 0.01
COL9A3-213ENST00000489045 FAM229AH3BQW9 127 aa15.11■□□□□ 0.01
COL9A3-213ENST00000489045 CRPP02741 224 aa15.11■□□□□ 0.01
COL9A3-213ENST00000489045 TMEM97Q5BJF2 176 aa15.11■□□□□ 0.01
COL9A3-213ENST00000489045 ENHOQ6UWT2 76 aa15.11■□□□□ 0.01
COL9A3-213ENST00000489045 BIN3Q9NQY0 253 aa15.11■□□□□ 0.01
COL9A3-213ENST00000489045 ANGP03950 147 aaKnown RBP15.1■□□□□ 0.01
COL9A3-213ENST00000489045 PKIAP61925 76 aa15.1■□□□□ 0.01
COL9A3-213ENST00000489045 LINC01620Q4KN68 170 aa15.1■□□□□ 0.01
COL9A3-213ENST00000489045 SUMO4Q6EEV6 95 aa15.1■□□□□ 0.01
COL9A3-213ENST00000489045 Q6ZSA8 131 aa15.1■□□□□ 0.01
COL9A3-213ENST00000489045 C1orf43Q9BWL3 253 aa15.1■□□□□ 0.01
COL9A3-213ENST00000489045 F2Z2F3 143 aa15.09■□□□□ 0.01
COL9A3-213ENST00000489045 M0QY20 66 aa15.09■□□□□ 0.01
COL9A3-213ENST00000489045 TAGLN2P37802 199 aaKnown RBP15.09■□□□□ 0.01
COL9A3-213ENST00000489045 H7C1H1 209 aa15.08■□□□□ 0
COL9A3-213ENST00000489045 LYZL1Q6UWQ5 148 aa15.08■□□□□ 0
COL9A3-213ENST00000489045 AKAP14Q86UN6 197 aa15.08■□□□□ 0
COL9A3-213ENST00000489045 C9orf62Q8N4C0 152 aa15.08■□□□□ 0
COL9A3-213ENST00000489045 TRBV25-1A0A075B6N4 114 aa15.07■□□□□ 0
COL9A3-213ENST00000489045 NUDT10Q8NFP7 164 aa15.07■□□□□ 0
COL9A3-213ENST00000489045 NUDT11Q96G61 164 aa15.07■□□□□ 0
COL9A3-213ENST00000489045 TRGC1P0CF51 173 aa15.06■□□□□ 0
COL9A3-213ENST00000489045 GAGE6Q13070 117 aa15.06■□□□□ 0
COL9A3-213ENST00000489045 DMBT1Q9UGM3 2413 aaPredicted RBP15.06■□□□□ 0
COL9A3-213ENST00000489045 hCG_2014768A0A024R1R8 64 aa15.05■□□□□ -0
COL9A3-213ENST00000489045 RBX1P62877 108 aa15.05■□□□□ -0
COL9A3-213ENST00000489045 DPH3P1Q9H4G8 78 aa15.05■□□□□ -0
COL9A3-213ENST00000489045 FLG2Q5D862 2391 aaPredicted RBP15.05■□□□□ -0
COL9A3-213ENST00000489045 IGHV1-24A0A0C4DH33 117 aa15.04■□□□□ -0
COL9A3-213ENST00000489045 K7EN84 100 aa15.04■□□□□ -0
COL9A3-213ENST00000489045 NTF3P20783 257 aa15.04■□□□□ -0
COL9A3-213ENST00000489045 CTRLP40313 264 aa15.04■□□□□ -0
COL9A3-213ENST00000489045 NKX2-5P52952 324 aaPredicted RBP15.04■□□□□ -0
COL9A3-213ENST00000489045 IQCJQ1A5X6 159 aa15.04■□□□□ -0
COL9A3-213ENST00000489045 RASL11AQ6T310 242 aa15.04■□□□□ -0
COL9A3-213ENST00000489045 CLPSL2Q6UWE3 100 aa15.04■□□□□ -0
COL9A3-213ENST00000489045 RNASE7Q9H1E1 156 aaKnown RBP15.04■□□□□ -0
COL9A3-213ENST00000489045 HLA-DQA1P01909 254 aa15.03■□□□□ -0
COL9A3-213ENST00000489045 MIAQ16674 131 aa15.03■□□□□ -0
COL9A3-213ENST00000489045 ALKAL2Q6UX46 152 aa15.03■□□□□ -0
COL9A3-213ENST00000489045 RPP21Q9H633 154 aaKnown RBP15.03■□□□□ -0
COL9A3-213ENST00000489045 C14orf177Q52M58 125 aa15.02■□□□□ -0
COL9A3-213ENST00000489045 LINC00269Q8N2A0 174 aa15.02■□□□□ -0
COL9A3-213ENST00000489045 OCC1Q8TAD7 63 aa15.02■□□□□ -0
COL9A3-213ENST00000489045 PRR34Q9NV39 138 aa15.02■□□□□ -0
COL9A3-213ENST00000489045 MYCBP2O75592 4640 aa15.01□□□□□ -0.01
COL9A3-213ENST00000489045 WDR73Q6P4I2 378 aa15.01□□□□□ -0.01
COL9A3-213ENST00000489045 BLOC1S1P78537 153 aa15□□□□□ -0.01
COL9A3-213ENST00000489045 TWIST1Q15672 202 aa15□□□□□ -0.01
COL9A3-213ENST00000489045 SCXQ7RTU7 201 aa15□□□□□ -0.01
COL9A3-213ENST00000489045 CNFNQ9BYD5 112 aa15□□□□□ -0.01
COL9A3-213ENST00000489045 NIT2Q9NQR4 276 aa15□□□□□ -0.01
COL9A3-213ENST00000489045 USP17L23D6RBM5 183 aa14.99□□□□□ -0.01
COL9A3-213ENST00000489045 LINC00528Q8N1L1 170 aa14.99□□□□□ -0.01
COL9A3-213ENST00000489045 TMEM243Q9BU79 118 aa14.98□□□□□ -0.01
COL9A3-213ENST00000489045 HERC1Q15751 4861 aa14.98□□□□□ -0.01
COL9A3-213ENST00000489045 TMEM250H0YL14 139 aa14.97□□□□□ -0.01
COL9A3-213ENST00000489045 KRTAP26-1Q6PEX3 210 aa14.97□□□□□ -0.01
COL9A3-213ENST00000489045 DEFB104AQ8WTQ1 72 aa14.97□□□□□ -0.01
COL9A3-213ENST00000489045 PGLYRP4Q96LB8 373 aa14.97□□□□□ -0.01
COL9A3-213ENST00000489045 LYPD6BQ8NI32 183 aa14.96□□□□□ -0.01
COL9A3-213ENST00000489045 PLA2G1BP04054 148 aaKnown RBP14.95□□□□□ -0.02
COL9A3-213ENST00000489045 REG3AQ06141 175 aa14.95□□□□□ -0.02
COL9A3-213ENST00000489045 C20orf203Q8NBC4 194 aa14.95□□□□□ -0.02
COL9A3-213ENST00000489045 GTSF1Q8WW33 167 aa14.95□□□□□ -0.02
COL9A3-213ENST00000489045 CHAC1Q9BUX1 264 aa14.95□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 98.2 ms