RNA–Protein interactions for RNA: ENST00000487188.1

VPS13D-209, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 3,990 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-209ENST00000487188 LY6LH3BQJ8 138 aa4.7□□□□□ -1.66
VPS13D-209ENST00000487188 IGHV1-69P01742 117 aa4.7□□□□□ -1.66
VPS13D-209ENST00000487188 ATP5G1P05496 136 aa4.7□□□□□ -1.66
VPS13D-209ENST00000487188 FAM19A5Q7Z5A7 132 aaPredicted RBP4.7□□□□□ -1.66
VPS13D-209ENST00000487188 AKAP6Q13023 2319 aa4.69□□□□□ -1.66
VPS13D-209ENST00000487188 CFAP47Q6ZTR5 3102 aa4.69□□□□□ -1.66
VPS13D-209ENST00000487188 G3V318 75 aa4.69□□□□□ -1.66
VPS13D-209ENST00000487188 RS1O15537 224 aa4.69□□□□□ -1.66
VPS13D-209ENST00000487188 DNAL4O96015 105 aa4.69□□□□□ -1.66
VPS13D-209ENST00000487188 CEMP1Q6PRD7 247 aaPredicted RBP4.69□□□□□ -1.66
VPS13D-209ENST00000487188 GPHB5Q86YW7 130 aa4.69□□□□□ -1.66
VPS13D-209ENST00000487188 ZFAND2AQ8N6M9 145 aa4.69□□□□□ -1.66
VPS13D-209ENST00000487188 AKAP13Q12802 2813 aa4.69□□□□□ -1.66
VPS13D-209ENST00000487188 ATOX1O00244 68 aa4.69□□□□□ -1.66
VPS13D-209ENST00000487188 POLR2KP53803 58 aaKnown RBP4.69□□□□□ -1.66
VPS13D-209ENST00000487188 TRBV7-1A0A0A6YYK4 115 aa4.69□□□□□ -1.66
VPS13D-209ENST00000487188 IGKV3-20P01619 116 aa4.69□□□□□ -1.66
VPS13D-209ENST00000487188 MIAQ16674 131 aa4.69□□□□□ -1.66
VPS13D-209ENST00000487188 RNASE13Q5GAN3 156 aaKnown RBP4.69□□□□□ -1.66
VPS13D-209ENST00000487188 Q6ZSV7 163 aa4.69□□□□□ -1.66
VPS13D-209ENST00000487188 LY6G5BQ8NDX9 201 aa4.69□□□□□ -1.66
VPS13D-209ENST00000487188 LINC00526Q96FQ7 95 aa4.69□□□□□ -1.66
VPS13D-209ENST00000487188 SPANXCQ9NY87 97 aa4.69□□□□□ -1.66
VPS13D-209ENST00000487188 NOTCH2Q04721 2471 aa4.68□□□□□ -1.66
VPS13D-209ENST00000487188 TRAV13-1A0A0B4J241 112 aa4.68□□□□□ -1.66
VPS13D-209ENST00000487188 hADV29S1A0JD25 119 aa4.68□□□□□ -1.66
VPS13D-209ENST00000487188 M0R1W7 72 aa4.68□□□□□ -1.66
VPS13D-209ENST00000487188 EIF4EBP3O60516 100 aaPredicted RBP4.68□□□□□ -1.66
VPS13D-209ENST00000487188 INAFM2P0DMQ5 153 aa4.68□□□□□ -1.66
VPS13D-209ENST00000487188 COX7CP15954 63 aa4.68□□□□□ -1.66
VPS13D-209ENST00000487188 DGAT2L7PQ6IED9 249 aa4.68□□□□□ -1.66
VPS13D-209ENST00000487188 DAND5Q8N907 189 aa4.68□□□□□ -1.66
VPS13D-209ENST00000487188 C20orf173Q96LM9 149 aa4.68□□□□□ -1.66
VPS13D-209ENST00000487188 AMELXQ99217 191 aa4.68□□□□□ -1.66
VPS13D-209ENST00000487188 ZNF580Q9UK33 172 aa4.68□□□□□ -1.66
VPS13D-209ENST00000487188 ZZEF1O43149 2961 aa4.68□□□□□ -1.66
VPS13D-209ENST00000487188 PRRC2AP48634 2157 aaKnown RBP4.68□□□□□ -1.66
VPS13D-209ENST00000487188 A0A0G2JNJ9 132 aa4.68□□□□□ -1.66
VPS13D-209ENST00000487188 Q9UFV3 132 aa4.68□□□□□ -1.66
VPS13D-209ENST00000487188 KMT2BQ9UMN6 2715 aaPredicted RBP4.68□□□□□ -1.66
VPS13D-209ENST00000487188 CHD8Q9HCK8 2581 aa4.68□□□□□ -1.66
VPS13D-209ENST00000487188 A0A0J9YX75 114 aa4.68□□□□□ -1.66
VPS13D-209ENST00000487188 RNF223E7ERA6 249 aa4.68□□□□□ -1.66
VPS13D-209ENST00000487188 RNASE3P12724 160 aaKnown RBP4.68□□□□□ -1.66
VPS13D-209ENST00000487188 TMEM219Q86XT9 240 aa4.68□□□□□ -1.66
VPS13D-209ENST00000487188 CCDC140Q96MF4 163 aa4.68□□□□□ -1.66
VPS13D-209ENST00000487188 DMXL2Q8TDJ6 3036 aa4.68□□□□□ -1.66
VPS13D-209ENST00000487188 IGHV4OR15-8A0A075B7B6 117 aa4.67□□□□□ -1.66
VPS13D-209ENST00000487188 A0A087WW49 117 aa4.67□□□□□ -1.66
VPS13D-209ENST00000487188 LY6HO94772 140 aa4.67□□□□□ -1.66
VPS13D-209ENST00000487188 PF4V1P10720 104 aa4.67□□□□□ -1.66
VPS13D-209ENST00000487188 IGFL2Q6UWQ7 119 aa4.67□□□□□ -1.66
VPS13D-209ENST00000487188 C20orf203Q8NBC4 194 aa4.67□□□□□ -1.66
VPS13D-209ENST00000487188 COPS9Q8WXC6 57 aa4.67□□□□□ -1.66
VPS13D-209ENST00000487188 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP4.67□□□□□ -1.66
VPS13D-209ENST00000487188 CLPSL1A2RUU4 121 aa4.67□□□□□ -1.66
VPS13D-209ENST00000487188 BAALC-AS2P0C853 105 aa4.67□□□□□ -1.66
VPS13D-209ENST00000487188 HTN1P15515 57 aa4.67□□□□□ -1.66
VPS13D-209ENST00000487188 TMEM61Q8N0U2 210 aa4.67□□□□□ -1.66
VPS13D-209ENST00000487188 PEMTQ9UBM1 199 aa4.67□□□□□ -1.66
VPS13D-209ENST00000487188 BSNQ9UPA5 3926 aa4.67□□□□□ -1.66
VPS13D-209ENST00000487188 IGLV4-3A0A075B6K6 122 aa4.67□□□□□ -1.66
VPS13D-209ENST00000487188 IGHV1-58A0A0C4DH39 117 aa4.67□□□□□ -1.66
VPS13D-209ENST00000487188 TRBV27A0A0K0K1C4 114 aa4.67□□□□□ -1.66
VPS13D-209ENST00000487188 A0A1B0GX51 115 aa4.67□□□□□ -1.66
VPS13D-209ENST00000487188 EBI3Q14213 229 aa4.67□□□□□ -1.66
VPS13D-209ENST00000487188 NSUN5P1Q3KNT7 163 aa4.67□□□□□ -1.66
VPS13D-209ENST00000487188 ZNF625Q96I27 306 aaPredicted RBP4.67□□□□□ -1.66
VPS13D-209ENST00000487188 IGHV3-11P01762 117 aa4.66□□□□□ -1.66
VPS13D-209ENST00000487188 DAZ2Q13117 558 aaKnown RBP4.66□□□□□ -1.66
VPS13D-209ENST00000487188 DAZ4Q86SG3 579 aaKnown RBP4.66□□□□□ -1.66
VPS13D-209ENST00000487188 DAZ1Q9NQZ3 744 aaKnown RBP4.66□□□□□ -1.66
VPS13D-209ENST00000487188 DAZ3Q9NR90 486 aaKnown RBP4.66□□□□□ -1.66
VPS13D-209ENST00000487188 DSPP15924 2871 aaKnown RBP4.66□□□□□ -1.66
VPS13D-209ENST00000487188 LY6DQ14210 128 aa4.66□□□□□ -1.66
VPS13D-209ENST00000487188 MINOS1Q5TGZ0 78 aa4.66□□□□□ -1.66
VPS13D-209ENST00000487188 Q8N9W7 124 aa4.66□□□□□ -1.66
VPS13D-209ENST00000487188 MINOS1-NBL1R4GNA1 71 aa4.66□□□□□ -1.66
VPS13D-209ENST00000487188 NACAE9PAV3 2078 aa4.66□□□□□ -1.66
VPS13D-209ENST00000487188 IGHV3-73A0A0B4J1V6 119 aa4.66□□□□□ -1.66
VPS13D-209ENST00000487188 ACACBO00763 2458 aa4.66□□□□□ -1.66
VPS13D-209ENST00000487188 IGKV3D-7A0A0C4DH55 119 aa4.65□□□□□ -1.66
VPS13D-209ENST00000487188 COX7A2LO14548 114 aa4.65□□□□□ -1.66
VPS13D-209ENST00000487188 ADAMTSL4-AS1Q5T5F5 129 aa4.65□□□□□ -1.66
VPS13D-209ENST00000487188 COL6A6A6NMZ7 2263 aa4.65□□□□□ -1.66
VPS13D-209ENST00000487188 LOC400499M0QZD8 3231 aa4.65□□□□□ -1.66
VPS13D-209ENST00000487188 A8MZ25 164 aa4.65□□□□□ -1.66
VPS13D-209ENST00000487188 UCNP55089 124 aa4.65□□□□□ -1.66
VPS13D-209ENST00000487188 ITLN2Q8WWU7 325 aaPredicted RBP4.65□□□□□ -1.66
VPS13D-209ENST00000487188 NCOR2Q9Y618 2525 aa4.65□□□□□ -1.67
VPS13D-209ENST00000487188 TRBV6-5A0A0K0K1A5 114 aa4.65□□□□□ -1.67
VPS13D-209ENST00000487188 SYNJ2BPP57105 145 aa4.65□□□□□ -1.67
VPS13D-209ENST00000487188 POM121L12Q8N7R1 296 aa4.65□□□□□ -1.67
VPS13D-209ENST00000487188 LINC01560Q8TB33 94 aa4.65□□□□□ -1.67
VPS13D-209ENST00000487188 ODF3BA8MYP8 253 aa4.64□□□□□ -1.67
VPS13D-209ENST00000487188 CXCL5P42830 114 aa4.64□□□□□ -1.67
VPS13D-209ENST00000487188 DEFB121Q5J5C9 76 aa4.64□□□□□ -1.67
VPS13D-209ENST00000487188 KLK9Q9UKQ9 250 aa4.64□□□□□ -1.67
VPS13D-209ENST00000487188 TMEM258P61165 79 aa4.64□□□□□ -1.67
VPS13D-209ENST00000487188 HIST1H4AP62805 103 aaKnown RBP4.64□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms