RNA–Protein interactions for RNA: ENST00000487017.5

COL7A1-210, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 5,807 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-210ENST00000487017 PCNX2A6NKB5 2137 aa12.56□□□□□ -0.4
COL7A1-210ENST00000487017 DAZAP2Q15038 168 aaPredicted RBP12.56□□□□□ -0.4
COL7A1-210ENST00000487017 NCOA6Q14686 2063 aaPredicted RBP12.55□□□□□ -0.4
COL7A1-210ENST00000487017 MED13LQ71F56 2210 aa12.55□□□□□ -0.4
COL7A1-210ENST00000487017 ARHGAP21Q5T5U3 1957 aa12.55□□□□□ -0.4
COL7A1-210ENST00000487017 C20orf203Q8NBC4 194 aa12.55□□□□□ -0.4
COL7A1-210ENST00000487017 TRBV12-3P01733 135 aa12.55□□□□□ -0.4
COL7A1-210ENST00000487017 ALPK3Q96L96 1907 aa12.54□□□□□ -0.4
COL7A1-210ENST00000487017 LGALS9O00182 355 aa12.54□□□□□ -0.4
COL7A1-210ENST00000487017 IGHV1-58A0A0C4DH39 117 aa12.54□□□□□ -0.4
COL7A1-210ENST00000487017 FBXL19-AS1Q494R0 122 aa12.54□□□□□ -0.4
COL7A1-210ENST00000487017 MDFICQ9P1T7 246 aa12.54□□□□□ -0.4
COL7A1-210ENST00000487017 MBD6Q96DN6 1003 aa12.54□□□□□ -0.4
COL7A1-210ENST00000487017 MRPL23Q16540 153 aaKnown RBP12.54□□□□□ -0.4
COL7A1-210ENST00000487017 C9orf66Q5T8R8 295 aa12.54□□□□□ -0.4
COL7A1-210ENST00000487017 CCDC140Q96MF4 163 aa12.54□□□□□ -0.4
COL7A1-210ENST00000487017 A0A0J9YX75 114 aa12.53□□□□□ -0.4
COL7A1-210ENST00000487017 ODF3BA8MYP8 253 aa12.53□□□□□ -0.4
COL7A1-210ENST00000487017 CCL18P55774 89 aa12.53□□□□□ -0.4
COL7A1-210ENST00000487017 DEFB4AO15263 64 aa12.53□□□□□ -0.4
COL7A1-210ENST00000487017 ATP5G1P05496 136 aa12.53□□□□□ -0.4
COL7A1-210ENST00000487017 IGLC6P0CF74 106 aa12.53□□□□□ -0.4
COL7A1-210ENST00000487017 SPART-AS1P0CW21 52 aa12.53□□□□□ -0.4
COL7A1-210ENST00000487017 OPRPNQ99935 248 aaPredicted RBP12.53□□□□□ -0.4
COL7A1-210ENST00000487017 F8W735 103 aaPredicted RBP12.52□□□□□ -0.4
COL7A1-210ENST00000487017 H3BT86 120 aa12.52□□□□□ -0.4
COL7A1-210ENST00000487017 DYSFO75923 2080 aa12.52□□□□□ -0.4
COL7A1-210ENST00000487017 FREM1Q5H8C1 2179 aa12.52□□□□□ -0.4
COL7A1-210ENST00000487017 NDUFA11Q86Y39 141 aa12.52□□□□□ -0.4
COL7A1-210ENST00000487017 CLEC2BQ92478 149 aa12.52□□□□□ -0.41
COL7A1-210ENST00000487017 NRGNQ92686 78 aa12.52□□□□□ -0.41
COL7A1-210ENST00000487017 J3KT08 172 aa12.52□□□□□ -0.41
COL7A1-210ENST00000487017 FAM236AA0A1B0GUQ0 79 aa12.51□□□□□ -0.41
COL7A1-210ENST00000487017 FAM236BA0A1B0GV22 79 aa12.51□□□□□ -0.41
COL7A1-210ENST00000487017 A6NDX4 124 aa12.51□□□□□ -0.41
COL7A1-210ENST00000487017 C14orf132Q9NPU4 83 aa12.51□□□□□ -0.41
COL7A1-210ENST00000487017 ADAMTS9Q9P2N4 1935 aa12.51□□□□□ -0.41
COL7A1-210ENST00000487017 ATOX1O00244 68 aa12.51□□□□□ -0.41
COL7A1-210ENST00000487017 UBE2AP49459 152 aa12.5□□□□□ -0.41
COL7A1-210ENST00000487017 NDUFB1O75438 58 aa12.5□□□□□ -0.41
COL7A1-210ENST00000487017 C4orf3Q8WVX3 66 aa12.5□□□□□ -0.41
COL7A1-210ENST00000487017 NREPQ16612 68 aa12.5□□□□□ -0.41
COL7A1-210ENST00000487017 Q8NA96 180 aa12.5□□□□□ -0.41
COL7A1-210ENST00000487017 HHLA3Q9XRX5 114 aa12.49□□□□□ -0.41
COL7A1-210ENST00000487017 COL4A4P53420 1690 aaPredicted RBP12.49□□□□□ -0.41
COL7A1-210ENST00000487017 TP53TG3Q9ULZ0 132 aa12.48□□□□□ -0.41
COL7A1-210ENST00000487017 A0A1B0GX51 115 aa12.48□□□□□ -0.41
COL7A1-210ENST00000487017 NFE4Q86UQ8 179 aa12.48□□□□□ -0.41
COL7A1-210ENST00000487017 H3BQ85 93 aa12.48□□□□□ -0.41
COL7A1-210ENST00000487017 LECT2O14960 151 aa12.48□□□□□ -0.41
COL7A1-210ENST00000487017 PTH2Q96A98 100 aa12.48□□□□□ -0.41
COL7A1-210ENST00000487017 MP68P56378 58 aa12.47□□□□□ -0.41
COL7A1-210ENST00000487017 CRYGBP07316 175 aa12.47□□□□□ -0.41
COL7A1-210ENST00000487017 PSMB8P28062 276 aa12.47□□□□□ -0.41
COL7A1-210ENST00000487017 NDUFC2O95298 119 aa12.47□□□□□ -0.41
COL7A1-210ENST00000487017 TCL1BO95988 128 aa12.47□□□□□ -0.41
COL7A1-210ENST00000487017 TMEM61Q8N0U2 210 aa12.47□□□□□ -0.41
COL7A1-210ENST00000487017 JMJD7-PLA2G4BH0Y9G9 81 aa12.46□□□□□ -0.41
COL7A1-210ENST00000487017 CXCL5P42830 114 aa12.46□□□□□ -0.41
COL7A1-210ENST00000487017 MIR7-3HGQ8N6C7 128 aa12.46□□□□□ -0.41
COL7A1-210ENST00000487017 MIAQ16674 131 aa12.46□□□□□ -0.41
COL7A1-210ENST00000487017 LINC01548A6NM66 108 aa12.46□□□□□ -0.42
COL7A1-210ENST00000487017 PLCE1Q9P212 2302 aa12.45□□□□□ -0.42
COL7A1-210ENST00000487017 DEFB135Q30KP9 77 aa12.45□□□□□ -0.42
COL7A1-210ENST00000487017 CEMP1Q6PRD7 247 aaPredicted RBP12.45□□□□□ -0.42
COL7A1-210ENST00000487017 Q6ZUT4 128 aa12.45□□□□□ -0.42
COL7A1-210ENST00000487017 NEXN-AS1Q8NBZ9 246 aa12.45□□□□□ -0.42
COL7A1-210ENST00000487017 TMEM263Q8WUH6 116 aaKnown RBP12.45□□□□□ -0.42
COL7A1-210ENST00000487017 NDUFA1O15239 70 aa12.45□□□□□ -0.42
COL7A1-210ENST00000487017 WFDC11Q8NEX6 87 aa12.45□□□□□ -0.42
COL7A1-210ENST00000487017 ODF3Q96PU9 254 aa12.45□□□□□ -0.42
COL7A1-210ENST00000487017 SPATA25Q9BR10 227 aa12.44□□□□□ -0.42
COL7A1-210ENST00000487017 NUP210LQ5VU65 1888 aa12.44□□□□□ -0.42
COL7A1-210ENST00000487017 TRBV10-1A0A0K0K1A3 114 aa12.44□□□□□ -0.42
COL7A1-210ENST00000487017 A0A0J9YXY3 114 aa12.44□□□□□ -0.42
COL7A1-210ENST00000487017 TP73-AS1Q9UF72 201 aa12.43□□□□□ -0.42
COL7A1-210ENST00000487017 PKIGQ9Y2B9 76 aa12.43□□□□□ -0.42
COL7A1-210ENST00000487017 LMO4P61968 165 aa12.43□□□□□ -0.42
COL7A1-210ENST00000487017 MAP6D1Q9H9H5 199 aa12.43□□□□□ -0.42
COL7A1-210ENST00000487017 MYCNOSP40205 109 aa12.43□□□□□ -0.42
COL7A1-210ENST00000487017 TM2D2Q9BX73 214 aa12.43□□□□□ -0.42
COL7A1-210ENST00000487017 KLK12Q9UKR0 248 aa12.43□□□□□ -0.42
COL7A1-210ENST00000487017 TNRC6BQ9UPQ9 1833 aaKnown RBP12.43□□□□□ -0.42
COL7A1-210ENST00000487017 FSTL3O95633 263 aa12.42□□□□□ -0.42
COL7A1-210ENST00000487017 CRIP1P50238 77 aa12.42□□□□□ -0.42
COL7A1-210ENST00000487017 C22orf34Q6ZV56 151 aa12.42□□□□□ -0.42
COL7A1-210ENST00000487017 U3KQK5 164 aa12.42□□□□□ -0.42
COL7A1-210ENST00000487017 TNFRSF13BO14836 293 aaPredicted RBP12.42□□□□□ -0.42
COL7A1-210ENST00000487017 C4orf48Q5BLP8 95 aa12.41□□□□□ -0.42
COL7A1-210ENST00000487017 IGF1P05019 195 aa12.41□□□□□ -0.42
COL7A1-210ENST00000487017 P0DMU3 169 aa12.41□□□□□ -0.42
COL7A1-210ENST00000487017 FAM231AP0DMU4 169 aa12.41□□□□□ -0.42
COL7A1-210ENST00000487017 FAM231CP0DMU5 169 aa12.41□□□□□ -0.42
COL7A1-210ENST00000487017 ATRXP46100 2492 aa12.41□□□□□ -0.42
COL7A1-210ENST00000487017 SPAG11BQ08648 103 aa12.41□□□□□ -0.42
COL7A1-210ENST00000487017 PCNX3Q9H6A9 2034 aa12.41□□□□□ -0.42
COL7A1-210ENST00000487017 RNF183Q96D59 192 aa12.4□□□□□ -0.42
COL7A1-210ENST00000487017 C20orf173Q96LM9 149 aa12.4□□□□□ -0.42
COL7A1-210ENST00000487017 PCDH15Q96QU1 1955 aa12.4□□□□□ -0.42
COL7A1-210ENST00000487017 LY6LH3BQJ8 138 aa12.4□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 71.9 ms