RNA–Protein interactions for RNA: ENST00000484581.6

VPS13A-211, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2 BASIC

Gene VPS13A, Length 1,155 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-211ENST00000484581 WHAMMP3Q1A5X7 153 aa1.21□□□□□ -2.22
VPS13A-211ENST00000484581 PPP3R2Q96LZ3 170 aa1.21□□□□□ -2.22
VPS13A-211ENST00000484581 DSCR8Q96T75 97 aa1.21□□□□□ -2.22
VPS13A-211ENST00000484581 MAP2P11137 1827 aaKnown RBP1.21□□□□□ -2.22
VPS13A-211ENST00000484581 EIF4G3O43432 1585 aaKnown RBP1.21□□□□□ -2.22
VPS13A-211ENST00000484581 ARFGEF1Q9Y6D6 1849 aa1.2□□□□□ -2.22
VPS13A-211ENST00000484581 A2ML1A8K2U0 1454 aa1.2□□□□□ -2.22
VPS13A-211ENST00000484581 A0A087WTM6 91 aa1.2□□□□□ -2.22
VPS13A-211ENST00000484581 TRBV7-1A0A0A6YYK4 115 aa1.2□□□□□ -2.22
VPS13A-211ENST00000484581 CGREF1Q99674 301 aa1.2□□□□□ -2.22
VPS13A-211ENST00000484581 RBBP6Q7Z6E9 1792 aaKnown RBP1.19□□□□□ -2.22
VPS13A-211ENST00000484581 MIF4GDA9UHW6 222 aaKnown RBP1.19□□□□□ -2.22
VPS13A-211ENST00000484581 SNAPC5O75971 98 aa1.19□□□□□ -2.22
VPS13A-211ENST00000484581 SIX6O95475 246 aa1.19□□□□□ -2.22
VPS13A-211ENST00000484581 GNG4P50150 75 aa1.19□□□□□ -2.22
VPS13A-211ENST00000484581 TPPP2P59282 170 aa1.19□□□□□ -2.22
VPS13A-211ENST00000484581 RBM3P98179 157 aaKnown RBP1.19□□□□□ -2.22
VPS13A-211ENST00000484581 CATR1Q13166 79 aa1.19□□□□□ -2.22
VPS13A-211ENST00000484581 IER3IP1Q9Y5U9 82 aa1.19□□□□□ -2.22
VPS13A-211ENST00000484581 V9GYV3 84 aa1.19□□□□□ -2.22
VPS13A-211ENST00000484581 RIMS1Q86UR5 1692 aaKnown RBP1.19□□□□□ -2.22
VPS13A-211ENST00000484581 CLPSL1A2RUU4 121 aa1.18□□□□□ -2.22
VPS13A-211ENST00000484581 HCG22E2RYF7 251 aa1.18□□□□□ -2.22
VPS13A-211ENST00000484581 ZNF137PP52743 207 aa1.18□□□□□ -2.22
VPS13A-211ENST00000484581 INSL4Q14641 139 aa1.18□□□□□ -2.22
VPS13A-211ENST00000484581 MRPL54Q6P161 138 aaKnown RBP1.18□□□□□ -2.22
VPS13A-211ENST00000484581 SPANXDQ9BXN6 97 aa1.18□□□□□ -2.22
VPS13A-211ENST00000484581 ASH1LQ9NR48 2969 aaKnown RBP1.18□□□□□ -2.22
VPS13A-211ENST00000484581 NWD2Q9ULI1 1742 aa1.18□□□□□ -2.22
VPS13A-211ENST00000484581 TENM1Q9UKZ4 2725 aa1.17□□□□□ -2.22
VPS13A-211ENST00000484581 PATJQ8NI35 1801 aa1.17□□□□□ -2.22
VPS13A-211ENST00000484581 QRICH2Q9H0J4 1663 aa1.17□□□□□ -2.22
VPS13A-211ENST00000484581 FAM135AQ9P2D6 1515 aa1.17□□□□□ -2.22
VPS13A-211ENST00000484581 TRAV13-2A0A0B4J235 113 aa1.17□□□□□ -2.22
VPS13A-211ENST00000484581 S100PP25815 95 aa1.17□□□□□ -2.22
VPS13A-211ENST00000484581 C8orf59Q8N0T1 100 aaPredicted RBP1.17□□□□□ -2.22
VPS13A-211ENST00000484581 LINC00312Q9Y6C7 94 aa1.17□□□□□ -2.22
VPS13A-211ENST00000484581 TANC1Q9C0D5 1861 aa1.17□□□□□ -2.22
VPS13A-211ENST00000484581 KTN1Q86UP2 1357 aaKnown RBP1.17□□□□□ -2.22
VPS13A-211ENST00000484581 DOCK11Q5JSL3 2073 aa1.17□□□□□ -2.22
VPS13A-211ENST00000484581 MYH8P13535 1937 aa1.17□□□□□ -2.22
VPS13A-211ENST00000484581 LOC285556D6RIA3 1793 aa1.16□□□□□ -2.22
VPS13A-211ENST00000484581 S100A1P23297 94 aa1.16□□□□□ -2.22
VPS13A-211ENST00000484581 EDDM3BP56851 147 aa1.16□□□□□ -2.22
VPS13A-211ENST00000484581 MYOM2P54296 1465 aa1.16□□□□□ -2.22
VPS13A-211ENST00000484581 PPP3R1P63098 170 aa1.15□□□□□ -2.23
VPS13A-211ENST00000484581 C6orf52Q5T4I8 152 aa1.15□□□□□ -2.23
VPS13A-211ENST00000484581 Q96NJ1 140 aa1.15□□□□□ -2.23
VPS13A-211ENST00000484581 F5P12259 2224 aa1.15□□□□□ -2.23
VPS13A-211ENST00000484581 CUL7Q14999 1698 aa1.14□□□□□ -2.23
VPS13A-211ENST00000484581 OOSP1A8MZH6 123 aa1.14□□□□□ -2.23
VPS13A-211ENST00000484581 C9orf153Q5TBE3 101 aa1.14□□□□□ -2.23
VPS13A-211ENST00000484581 CASKIN1Q8WXD9 1431 aa1.14□□□□□ -2.23
VPS13A-211ENST00000484581 DOCK1Q14185 1865 aa1.14□□□□□ -2.23
VPS13A-211ENST00000484581 A0A0D9SG42 100 aa1.13□□□□□ -2.23
VPS13A-211ENST00000484581 C5orf38Q86SI9 138 aa1.13□□□□□ -2.23
VPS13A-211ENST00000484581 AQP10Q96PS8 301 aa1.13□□□□□ -2.23
VPS13A-211ENST00000484581 PI4KAP42356 2102 aa1.13□□□□□ -2.23
VPS13A-211ENST00000484581 ARAP2Q8WZ64 1704 aa1.12□□□□□ -2.23
VPS13A-211ENST00000484581 LRRC37A3O60309 1634 aa1.12□□□□□ -2.23
VPS13A-211ENST00000484581 WFDC6Q9BQY6 131 aa1.12□□□□□ -2.23
VPS13A-211ENST00000484581 CYP4F30PQ9H0H9 118 aa1.12□□□□□ -2.23
VPS13A-211ENST00000484581 DOCK2Q92608 1830 aa1.12□□□□□ -2.23
VPS13A-211ENST00000484581 F2Z2F3 143 aa1.11□□□□□ -2.23
VPS13A-211ENST00000484581 SSSCA1O60232 199 aa1.11□□□□□ -2.23
VPS13A-211ENST00000484581 PRB3Q04118 309 aaPredicted RBP1.11□□□□□ -2.23
VPS13A-211ENST00000484581 C10orf128Q5T292 105 aa1.11□□□□□ -2.23
VPS13A-211ENST00000484581 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa1.11□□□□□ -2.23
VPS13A-211ENST00000484581 CPSF1Q10570 1443 aaKnown RBP1.11□□□□□ -2.23
VPS13A-211ENST00000484581 C20orf202A1L168 122 aa1.1□□□□□ -2.23
VPS13A-211ENST00000484581 ATP6V1G2-DDX39BF2Z307 99 aa1.1□□□□□ -2.23
VPS13A-211ENST00000484581 COMMD6Q7Z4G1 85 aa1.1□□□□□ -2.23
VPS13A-211ENST00000484581 C12orf57Q99622 126 aa1.1□□□□□ -2.23
VPS13A-211ENST00000484581 BPESC1Q9GZL8 116 aa1.1□□□□□ -2.23
VPS13A-211ENST00000484581 SCP2D1Q9UJQ7 156 aa1.1□□□□□ -2.23
VPS13A-211ENST00000484581 PXDNQ92626 1479 aa1.1□□□□□ -2.23
VPS13A-211ENST00000484581 SIPA1L3O60292 1781 aaPredicted RBP1.09□□□□□ -2.23
VPS13A-211ENST00000484581 GVQW2A0A096LPI5 108 aaPredicted RBP1.09□□□□□ -2.23
VPS13A-211ENST00000484581 TRGV1A0A0A0MS02 117 aa1.09□□□□□ -2.23
VPS13A-211ENST00000484581 SVBPQ8N300 66 aa1.09□□□□□ -2.23
VPS13A-211ENST00000484581 SMIM11BQ8TCY0 68 aa1.09□□□□□ -2.23
VPS13A-211ENST00000484581 TCEAL7Q9BRU2 100 aa1.09□□□□□ -2.23
VPS13A-211ENST00000484581 PPIP5K1Q6PFW1 1433 aa1.08□□□□□ -2.24
VPS13A-211ENST00000484581 FAM24AA6NFZ4 105 aa1.08□□□□□ -2.24
VPS13A-211ENST00000484581 ACYP2P14621 99 aa1.08□□□□□ -2.24
VPS13A-211ENST00000484581 VMO1Q7Z5L0 202 aa1.08□□□□□ -2.24
VPS13A-211ENST00000484581 TTC9CQ8N5M4 171 aa1.08□□□□□ -2.24
VPS13A-211ENST00000484581 DPH3P1Q9H4G8 78 aa1.08□□□□□ -2.24
VPS13A-211ENST00000484581 TNS1Q9HBL0 1735 aaKnown RBP1.08□□□□□ -2.24
VPS13A-211ENST00000484581 MAPKBP1O60336 1514 aa1.08□□□□□ -2.24
VPS13A-211ENST00000484581 ZNF462Q96JM2 2506 aa1.08□□□□□ -2.24
VPS13A-211ENST00000484581 ROBO1Q9Y6N7 1651 aa1.07□□□□□ -2.24
VPS13A-211ENST00000484581 PZPP20742 1482 aa1.07□□□□□ -2.24
VPS13A-211ENST00000484581 CDK13Q14004 1512 aaKnown RBP1.07□□□□□ -2.24
VPS13A-211ENST00000484581 UBE2L5PA0A1B0GUS4 154 aa1.07□□□□□ -2.24
VPS13A-211ENST00000484581 SMIM6P0DI80 62 aa1.07□□□□□ -2.24
VPS13A-211ENST00000484581 IFITM1P13164 125 aa1.07□□□□□ -2.24
VPS13A-211ENST00000484581 UBE2L3P68036 154 aaKnown RBP1.07□□□□□ -2.24
VPS13A-211ENST00000484581 GTF2H5Q6ZYL4 71 aa1.07□□□□□ -2.24
VPS13A-211ENST00000484581 C14orf144Q96I85 54 aa1.07□□□□□ -2.24
Retrieved 100 of 20,778 RNA–protein pairs in 52 ms