RNA–Protein interactions for RNA: ENST00000482056.2

C9orf3-218, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 1 (best)

Gene C9orf3, Length 1,951 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-218ENST00000482056 PRO0461Q9UI25 63 aa11.3□□□□□ -0.6
C9orf3-218ENST00000482056 KNCNA6PVL3 124 aa11.3□□□□□ -0.6
C9orf3-218ENST00000482056 A8MWV9 139 aa11.3□□□□□ -0.6
C9orf3-218ENST00000482056 DEFB131AP59861 70 aa11.3□□□□□ -0.6
C9orf3-218ENST00000482056 Q5PR19 223 aa11.3□□□□□ -0.6
C9orf3-218ENST00000482056 CFAP46Q8IYW2 2715 aa11.29□□□□□ -0.6
C9orf3-218ENST00000482056 COL12A1Q99715 3063 aa11.29□□□□□ -0.6
C9orf3-218ENST00000482056 A8MTW9 85 aa11.29□□□□□ -0.6
C9orf3-218ENST00000482056 IGHV4-31P0DP07 118 aa11.29□□□□□ -0.6
C9orf3-218ENST00000482056 HTN1P15515 57 aa11.29□□□□□ -0.6
C9orf3-218ENST00000482056 ZNF415Q09FC8 603 aa11.29□□□□□ -0.6
C9orf3-218ENST00000482056 PIK3CD-AS1Q5SR53 167 aa11.29□□□□□ -0.6
C9orf3-218ENST00000482056 DUX3Q96PT4 197 aa11.29□□□□□ -0.6
C9orf3-218ENST00000482056 OPRPNQ99935 248 aaPredicted RBP11.29□□□□□ -0.6
C9orf3-218ENST00000482056 BEX4Q9NWD9 120 aaPredicted RBP11.29□□□□□ -0.6
C9orf3-218ENST00000482056 PYGO1Q9Y3Y4 419 aa11.29□□□□□ -0.6
C9orf3-218ENST00000482056 TNFRSF18Q9Y5U5 241 aa11.29□□□□□ -0.6
C9orf3-218ENST00000482056 IGLV4-3A0A075B6K6 122 aa11.28□□□□□ -0.6
C9orf3-218ENST00000482056 M0R2P5 195 aa11.28□□□□□ -0.6
C9orf3-218ENST00000482056 RHODO00212 210 aa11.28□□□□□ -0.6
C9orf3-218ENST00000482056 PSMB2P49721 201 aa11.28□□□□□ -0.6
C9orf3-218ENST00000482056 CRYBA4P53673 196 aa11.28□□□□□ -0.6
C9orf3-218ENST00000482056 SLURP1P55000 103 aa11.28□□□□□ -0.6
C9orf3-218ENST00000482056 SH2D6Q7Z4S9 175 aa11.28□□□□□ -0.6
C9orf3-218ENST00000482056 H3BMM0 161 aa11.28□□□□□ -0.6
C9orf3-218ENST00000482056 ZNF22P17026 224 aaPredicted RBP11.28□□□□□ -0.6
C9orf3-218ENST00000482056 UBE2D3P61077 147 aa11.28□□□□□ -0.6
C9orf3-218ENST00000482056 UBE2D2P62837 147 aa11.28□□□□□ -0.6
C9orf3-218ENST00000482056 AMELXQ99217 191 aa11.28□□□□□ -0.6
C9orf3-218ENST00000482056 USP9XQ93008 2570 aaPredicted RBP11.28□□□□□ -0.6
C9orf3-218ENST00000482056 TRBV20-1A0A075B6N2 111 aa11.27□□□□□ -0.61
C9orf3-218ENST00000482056 RBMY1A1P0DJD3 496 aaKnown RBP11.27□□□□□ -0.61
C9orf3-218ENST00000482056 RBMY1CP0DJD4 496 aa11.27□□□□□ -0.61
C9orf3-218ENST00000482056 CD28P10747 220 aa11.27□□□□□ -0.61
C9orf3-218ENST00000482056 RBMY1FQ15415 496 aaKnown RBP11.27□□□□□ -0.61
C9orf3-218ENST00000482056 ATP6V0E2Q8NHE4 81 aa11.27□□□□□ -0.61
C9orf3-218ENST00000482056 SPAG8Q99932 426 aaPredicted RBP11.27□□□□□ -0.61
C9orf3-218ENST00000482056 ANKRD17O75179 2603 aaKnown RBP11.27□□□□□ -0.61
C9orf3-218ENST00000482056 CFAP126Q5VTH2 177 aa11.27□□□□□ -0.61
C9orf3-218ENST00000482056 Q8N2B8 174 aa11.27□□□□□ -0.61
C9orf3-218ENST00000482056 PTH2Q96A98 100 aa11.27□□□□□ -0.61
C9orf3-218ENST00000482056 SIGMAR1Q99720 223 aa11.27□□□□□ -0.61
C9orf3-218ENST00000482056 PRO1854Q9UHT4 67 aa11.27□□□□□ -0.61
C9orf3-218ENST00000482056 FLNCQ14315 2725 aa11.26□□□□□ -0.61
C9orf3-218ENST00000482056 DOPEY2Q9Y3R5 2298 aa11.26□□□□□ -0.61
C9orf3-218ENST00000482056 TMEM238C9JI98 176 aa11.26□□□□□ -0.61
C9orf3-218ENST00000482056 CFC1BP0CG36 223 aa11.26□□□□□ -0.61
C9orf3-218ENST00000482056 CFC1P0CG37 223 aa11.26□□□□□ -0.61
C9orf3-218ENST00000482056 DEFB136Q30KP8 78 aa11.26□□□□□ -0.61
C9orf3-218ENST00000482056 MTURNQ8N3F0 131 aa11.26□□□□□ -0.61
C9orf3-218ENST00000482056 C10orf126Q8N4M7 172 aa11.26□□□□□ -0.61
C9orf3-218ENST00000482056 RAX2Q96IS3 184 aa11.26□□□□□ -0.61
C9orf3-218ENST00000482056 TSSC4Q9Y5U2 329 aaPredicted RBP11.26□□□□□ -0.61
C9orf3-218ENST00000482056 MAP1AP78559 2803 aaPredicted RBP11.26□□□□□ -0.61
C9orf3-218ENST00000482056 IGHV3-73A0A0B4J1V6 119 aa11.25□□□□□ -0.61
C9orf3-218ENST00000482056 A0A0J9YXV3 536 aa11.25□□□□□ -0.61
C9orf3-218ENST00000482056 GAGE12HA6NDE8 117 aa11.25□□□□□ -0.61
C9orf3-218ENST00000482056 DYNLRB2Q8TF09 96 aa11.25□□□□□ -0.61
C9orf3-218ENST00000482056 C4orf3Q8WVX3 66 aa11.25□□□□□ -0.61
C9orf3-218ENST00000482056 CACNA1AO00555 2505 aa11.25□□□□□ -0.61
C9orf3-218ENST00000482056 PIEZO1Q92508 2521 aa11.25□□□□□ -0.61
C9orf3-218ENST00000482056 C1QTNF4Q9BXJ3 329 aa11.25□□□□□ -0.61
C9orf3-218ENST00000482056 CELSR2Q9HCU4 2923 aa11.24□□□□□ -0.61
C9orf3-218ENST00000482056 IGSF10Q6WRI0 2623 aa11.24□□□□□ -0.61
C9orf3-218ENST00000482056 SCGB1A1P11684 91 aa11.23□□□□□ -0.61
C9orf3-218ENST00000482056 KHDC1LQ5JSQ8 128 aa11.23□□□□□ -0.61
C9orf3-218ENST00000482056 SFTA2Q6UW10 78 aa11.23□□□□□ -0.61
C9orf3-218ENST00000482056 C18orf65Q6ZTR6 163 aa11.23□□□□□ -0.61
C9orf3-218ENST00000482056 TMEM61Q8N0U2 210 aa11.23□□□□□ -0.61
C9orf3-218ENST00000482056 LINC00467Q9BRT7 94 aa11.23□□□□□ -0.61
C9orf3-218ENST00000482056 SPXQ9BT56 116 aa11.23□□□□□ -0.61
C9orf3-218ENST00000482056 TIMM21Q9BVV7 248 aa11.23□□□□□ -0.61
C9orf3-218ENST00000482056 SPANXA1Q9NS26 97 aa11.23□□□□□ -0.61
C9orf3-218ENST00000482056 SORL1Q92673 2214 aa11.23□□□□□ -0.61
C9orf3-218ENST00000482056 TRAV16A0A0A6YYK6 109 aaPredicted RBP11.23□□□□□ -0.61
C9orf3-218ENST00000482056 RBMY1BA6NDE4 496 aaKnown RBP11.23□□□□□ -0.61
C9orf3-218ENST00000482056 RBMY1EA6NEQ0 496 aaKnown RBP11.23□□□□□ -0.61
C9orf3-218ENST00000482056 RBMY1DP0C7P1 496 aaKnown RBP11.23□□□□□ -0.61
C9orf3-218ENST00000482056 SCGB1C2P0DMR2 95 aa11.23□□□□□ -0.61
C9orf3-218ENST00000482056 DNAJC30Q96LL9 226 aa11.23□□□□□ -0.61
C9orf3-218ENST00000482056 LINC01587Q99440 93 aa11.23□□□□□ -0.61
C9orf3-218ENST00000482056 SPATA25Q9BR10 227 aa11.23□□□□□ -0.61
C9orf3-218ENST00000482056 IGHV3-64A0A075B6Q5 118 aa11.22□□□□□ -0.61
C9orf3-218ENST00000482056 INSP01308 110 aa11.22□□□□□ -0.61
C9orf3-218ENST00000482056 MRPS36P82909 103 aaKnown RBP11.22□□□□□ -0.61
C9orf3-218ENST00000482056 MAP6D1Q9H9H5 199 aa11.22□□□□□ -0.61
C9orf3-218ENST00000482056 A0A0B4J2C4 111 aa11.21□□□□□ -0.61
C9orf3-218ENST00000482056 A4D1N5 150 aa11.21□□□□□ -0.61
C9orf3-218ENST00000482056 LRRC75A-AS1Q8N1F1 130 aa11.21□□□□□ -0.61
C9orf3-218ENST00000482056 ZNF418Q8TF45 676 aaPredicted RBP11.21□□□□□ -0.61
C9orf3-218ENST00000482056 CR1P17927 2039 aa11.21□□□□□ -0.61
C9orf3-218ENST00000482056 MYO18BQ8IUG5 2567 aa11.21□□□□□ -0.61
C9orf3-218ENST00000482056 IGHV3-30-3P0DP02 117 aa11.21□□□□□ -0.62
C9orf3-218ENST00000482056 AZU1P20160 251 aa11.21□□□□□ -0.62
C9orf3-218ENST00000482056 PROK1P58294 105 aa11.21□□□□□ -0.62
C9orf3-218ENST00000482056 FOXI1Q12951 378 aa11.21□□□□□ -0.62
C9orf3-218ENST00000482056 DEFB113Q30KQ7 82 aa11.21□□□□□ -0.62
C9orf3-218ENST00000482056 TCL1BO95988 128 aa11.2□□□□□ -0.62
C9orf3-218ENST00000482056 GTSF1LQ9H1H1 148 aa11.2□□□□□ -0.62
C9orf3-218ENST00000482056 ERG28Q9UKR5 140 aa11.2□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms