RNA–Protein interactions for RNA: ENST00000479544.6

USP42-206, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 1 (best)

Gene USP42, Length 4,286 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-206ENST00000479544 UBE2E1P51965 193 aa10.33□□□□□ -0.76
USP42-206ENST00000479544 PIP4P2Q8N4L2 257 aa10.33□□□□□ -0.76
USP42-206ENST00000479544 CHCHD5Q9BSY4 110 aa10.33□□□□□ -0.76
USP42-206ENST00000479544 XCL2Q9UBD3 114 aa10.33□□□□□ -0.76
USP42-206ENST00000479544 CRPP02741 224 aa10.32□□□□□ -0.76
USP42-206ENST00000479544 FAM236AA0A1B0GUQ0 79 aa10.32□□□□□ -0.76
USP42-206ENST00000479544 FAM236BA0A1B0GV22 79 aa10.32□□□□□ -0.76
USP42-206ENST00000479544 BLCAPP62952 87 aa10.32□□□□□ -0.76
USP42-206ENST00000479544 CFHR3Q02985 330 aa10.32□□□□□ -0.76
USP42-206ENST00000479544 Q8N1Y9 231 aa10.32□□□□□ -0.76
USP42-206ENST00000479544 SMAD5-AS1Q9Y6J3 95 aa10.32□□□□□ -0.76
USP42-206ENST00000479544 IGHV1OR15-1A0A075B7D0 117 aa10.32□□□□□ -0.76
USP42-206ENST00000479544 TINCRA0A1B0GVN0 87 aa10.31□□□□□ -0.76
USP42-206ENST00000479544 TRBV6-1A0A0K0K1D8 114 aa10.31□□□□□ -0.76
USP42-206ENST00000479544 ADAMTS20P59510 1910 aa10.31□□□□□ -0.76
USP42-206ENST00000479544 TRAV12-1A0A0B4J245 112 aa10.3□□□□□ -0.76
USP42-206ENST00000479544 Q6ZS46 218 aa10.3□□□□□ -0.76
USP42-206ENST00000479544 MDFICQ9P1T7 246 aa10.3□□□□□ -0.76
USP42-206ENST00000479544 U3KQK5 164 aa10.3□□□□□ -0.76
USP42-206ENST00000479544 ZNRF2Q8NHG8 242 aa10.3□□□□□ -0.76
USP42-206ENST00000479544 ZFP36P26651 326 aaKnown RBP10.29□□□□□ -0.76
USP42-206ENST00000479544 TCTEX1D4Q5JR98 221 aa10.29□□□□□ -0.76
USP42-206ENST00000479544 FAM223BA6NKX1 122 aa10.29□□□□□ -0.76
USP42-206ENST00000479544 FAM223AQ8IWN6 122 aa10.29□□□□□ -0.76
USP42-206ENST00000479544 Q9H8V8 135 aa10.29□□□□□ -0.76
USP42-206ENST00000479544 A0A0J9YY99 117 aa10.29□□□□□ -0.76
USP42-206ENST00000479544 NPBQ8NG41 125 aa10.29□□□□□ -0.76
USP42-206ENST00000479544 TRAV4A0A0B4J268 109 aa10.28□□□□□ -0.76
USP42-206ENST00000479544 FSTL3O95633 263 aa10.28□□□□□ -0.76
USP42-206ENST00000479544 P0DMU3 169 aa10.28□□□□□ -0.76
USP42-206ENST00000479544 FAM231AP0DMU4 169 aa10.28□□□□□ -0.76
USP42-206ENST00000479544 FAM231CP0DMU5 169 aa10.28□□□□□ -0.76
USP42-206ENST00000479544 NEXN-AS1Q8NBZ9 246 aa10.28□□□□□ -0.76
USP42-206ENST00000479544 USMG5Q96IX5 58 aa10.28□□□□□ -0.76
USP42-206ENST00000479544 CENPVL3A0A0U1RRI6 287 aa10.27□□□□□ -0.76
USP42-206ENST00000479544 NDUFA4O00483 81 aa10.27□□□□□ -0.76
USP42-206ENST00000479544 NDUFV3P56181 108 aaKnown RBP10.27□□□□□ -0.76
USP42-206ENST00000479544 CFAP126Q5VTH2 177 aa10.27□□□□□ -0.76
USP42-206ENST00000479544 STHQ8IWL8 128 aa10.27□□□□□ -0.76
USP42-206ENST00000479544 A8MZ25 164 aa10.27□□□□□ -0.77
USP42-206ENST00000479544 CRYGBP07316 175 aa10.27□□□□□ -0.77
USP42-206ENST00000479544 ICOSQ9Y6W8 199 aa10.27□□□□□ -0.77
USP42-206ENST00000479544 TRGV4A0A0C4DH28 118 aa10.27□□□□□ -0.77
USP42-206ENST00000479544 LEPROTO15243 131 aa10.27□□□□□ -0.77
USP42-206ENST00000479544 C16orf54Q6UWD8 224 aa10.27□□□□□ -0.77
USP42-206ENST00000479544 NXPH4O95158 308 aa10.27□□□□□ -0.77
USP42-206ENST00000479544 NRACQ8N912 160 aa10.26□□□□□ -0.77
USP42-206ENST00000479544 IGKV3D-7A0A0C4DH55 119 aa10.26□□□□□ -0.77
USP42-206ENST00000479544 IGHV7-4-1A0A0J9YVY3 117 aa10.26□□□□□ -0.77
USP42-206ENST00000479544 BAALC-AS2P0C853 105 aa10.26□□□□□ -0.77
USP42-206ENST00000479544 RPL36AP83881 106 aaKnown RBP10.26□□□□□ -0.77
USP42-206ENST00000479544 C9orf47Q6ZRZ4 202 aa10.26□□□□□ -0.77
USP42-206ENST00000479544 RPL36ALQ969Q0 106 aaKnown RBP10.26□□□□□ -0.77
USP42-206ENST00000479544 CCDC140Q96MF4 163 aa10.26□□□□□ -0.77
USP42-206ENST00000479544 SPATA25Q9BR10 227 aa10.26□□□□□ -0.77
USP42-206ENST00000479544 PRR9Q5T870 116 aa10.26□□□□□ -0.77
USP42-206ENST00000479544 AJUBAQ96IF1 538 aa10.26□□□□□ -0.77
USP42-206ENST00000479544 IGHV1-69DA0A0B4J2H0 117 aa10.25□□□□□ -0.77
USP42-206ENST00000479544 RBMY1BA6NDE4 496 aaKnown RBP10.25□□□□□ -0.77
USP42-206ENST00000479544 RBMY1EA6NEQ0 496 aaKnown RBP10.25□□□□□ -0.77
USP42-206ENST00000479544 RBMY1DP0C7P1 496 aaKnown RBP10.25□□□□□ -0.77
USP42-206ENST00000479544 RBMY1A1P0DJD3 496 aaKnown RBP10.25□□□□□ -0.77
USP42-206ENST00000479544 RBMY1CP0DJD4 496 aa10.25□□□□□ -0.77
USP42-206ENST00000479544 TRBV7-3A0A075B6L6 115 aa10.25□□□□□ -0.77
USP42-206ENST00000479544 CFAP47Q6ZTR5 3102 aa10.25□□□□□ -0.77
USP42-206ENST00000479544 CCDC179H3BU77 68 aa10.25□□□□□ -0.77
USP42-206ENST00000479544 C6orf226Q5I0X4 101 aa10.25□□□□□ -0.77
USP42-206ENST00000479544 IGHV3-30-3P0DP02 117 aa10.24□□□□□ -0.77
USP42-206ENST00000479544 HTN3P15516 51 aa10.24□□□□□ -0.77
USP42-206ENST00000479544 GATA3P23771 443 aa10.24□□□□□ -0.77
USP42-206ENST00000479544 ZNF415Q09FC8 603 aa10.24□□□□□ -0.77
USP42-206ENST00000479544 CRIP2P52943 208 aaPredicted RBP10.24□□□□□ -0.77
USP42-206ENST00000479544 C20orf173Q96LM9 149 aa10.24□□□□□ -0.77
USP42-206ENST00000479544 DEFB136Q30KP8 78 aa10.24□□□□□ -0.77
USP42-206ENST00000479544 NFE4Q86UQ8 179 aa10.24□□□□□ -0.77
USP42-206ENST00000479544 ATP6V0E2Q8NHE4 81 aa10.24□□□□□ -0.77
USP42-206ENST00000479544 ACANP16112 2415 aa10.23□□□□□ -0.77
USP42-206ENST00000479544 GNLYP22749 145 aa10.23□□□□□ -0.77
USP42-206ENST00000479544 SLC25A29Q8N8R3 303 aa10.23□□□□□ -0.77
USP42-206ENST00000479544 COL5A1P20908 1838 aaPredicted RBP10.23□□□□□ -0.77
USP42-206ENST00000479544 RHODO00212 210 aa10.23□□□□□ -0.77
USP42-206ENST00000479544 IGHV1-69P01742 117 aa10.23□□□□□ -0.77
USP42-206ENST00000479544 RPL35AP18077 110 aaKnown RBP10.23□□□□□ -0.77
USP42-206ENST00000479544 TRBV10-2A0A0K0K1G8 114 aa10.22□□□□□ -0.77
USP42-206ENST00000479544 LENEPQ9Y5L5 61 aa10.22□□□□□ -0.77
USP42-206ENST00000479544 BOD1L1Q8NFC6 3051 aa10.22□□□□□ -0.77
USP42-206ENST00000479544 Q9HAA7 133 aa10.22□□□□□ -0.77
USP42-206ENST00000479544 MRPS12O15235 138 aaKnown RBP10.21□□□□□ -0.78
USP42-206ENST00000479544 Q8NA96 180 aa10.21□□□□□ -0.78
USP42-206ENST00000479544 LGALS9O00182 355 aa10.21□□□□□ -0.78
USP42-206ENST00000479544 IGHV3-33P01772 117 aa10.21□□□□□ -0.78
USP42-206ENST00000479544 IGHV4-38-2P0DP08 117 aa10.21□□□□□ -0.78
USP42-206ENST00000479544 MRPL53Q96EL3 112 aaKnown RBP10.21□□□□□ -0.78
USP42-206ENST00000479544 LAMTOR3Q9UHA4 124 aa10.21□□□□□ -0.78
USP42-206ENST00000479544 TRIAP1O43715 76 aa10.2□□□□□ -0.78
USP42-206ENST00000479544 PRM2P04554 102 aa10.2□□□□□ -0.78
USP42-206ENST00000479544 DEFB130BP0DP73 79 aa10.2□□□□□ -0.78
USP42-206ENST00000479544 DEFB130AP0DP74 79 aa10.2□□□□□ -0.78
USP42-206ENST00000479544 A0A0J9YXY3 114 aa10.2□□□□□ -0.78
USP42-206ENST00000479544 TIMM17AQ99595 171 aa10.2□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 69.6 ms