RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 TMSB15BA0A087X1C1 80 aa9.41□□□□□ -0.9
UPF3A-204ENST00000475218 TMEM238LA0A1B0GVL6 79 aa9.41□□□□□ -0.9
UPF3A-204ENST00000475218 SCO2A0A1W2PP80 73 aa9.41□□□□□ -0.9
UPF3A-204ENST00000475218 EREGO14944 169 aa9.41□□□□□ -0.9
UPF3A-204ENST00000475218 RPS10P46783 165 aaKnown RBP9.41□□□□□ -0.9
UPF3A-204ENST00000475218 UBE2G1P62253 170 aa9.41□□□□□ -0.9
UPF3A-204ENST00000475218 LINC00469Q8N7U9 141 aa9.41□□□□□ -0.9
UPF3A-204ENST00000475218 SFRP2Q96HF1 295 aa9.41□□□□□ -0.9
UPF3A-204ENST00000475218 MLST8Q9BVC4 326 aa9.41□□□□□ -0.9
UPF3A-204ENST00000475218 VPS13BQ7Z7G8 4022 aa9.41□□□□□ -0.9
UPF3A-204ENST00000475218 Q9HAA7 133 aa9.4□□□□□ -0.9
UPF3A-204ENST00000475218 A0A087WWL8 130 aa9.4□□□□□ -0.91
UPF3A-204ENST00000475218 IFNA1P01562 189 aa9.4□□□□□ -0.91
UPF3A-204ENST00000475218 WFDC2Q14508 124 aa9.4□□□□□ -0.91
UPF3A-204ENST00000475218 ELOBQ15370 118 aa9.4□□□□□ -0.91
UPF3A-204ENST00000475218 CCL20P78556 96 aa9.39□□□□□ -0.91
UPF3A-204ENST00000475218 RPL19P84098 196 aaKnown RBP9.39□□□□□ -0.91
UPF3A-204ENST00000475218 DNAH8Q96JB1 4490 aa9.38□□□□□ -0.91
UPF3A-204ENST00000475218 M0R381 172 aa9.38□□□□□ -0.91
UPF3A-204ENST00000475218 PPP1R2P9O14990 202 aa9.38□□□□□ -0.91
UPF3A-204ENST00000475218 FAM74A4Q5TZK3 123 aa9.38□□□□□ -0.91
UPF3A-204ENST00000475218 SYT8Q8NBV8 401 aa9.38□□□□□ -0.91
UPF3A-204ENST00000475218 TRBV24-1A0A075B6N3 115 aa9.37□□□□□ -0.91
UPF3A-204ENST00000475218 RHODO00212 210 aa9.37□□□□□ -0.91
UPF3A-204ENST00000475218 DAZ4Q86SG3 579 aaKnown RBP9.37□□□□□ -0.91
UPF3A-204ENST00000475218 DNAJC30Q96LL9 226 aa9.37□□□□□ -0.91
UPF3A-204ENST00000475218 DAZ3Q9NR90 486 aaKnown RBP9.37□□□□□ -0.91
UPF3A-204ENST00000475218 PHLDA3Q9Y5J5 127 aa9.37□□□□□ -0.91
UPF3A-204ENST00000475218 SRRM2Q9UQ35 2752 aaKnown RBP9.37□□□□□ -0.91
UPF3A-204ENST00000475218 LAGE3Q14657 143 aa9.37□□□□□ -0.91
UPF3A-204ENST00000475218 BCL2P10415 239 aa9.36□□□□□ -0.91
UPF3A-204ENST00000475218 GCSHP23434 173 aa9.36□□□□□ -0.91
UPF3A-204ENST00000475218 Q8N814 137 aa9.36□□□□□ -0.91
UPF3A-204ENST00000475218 OR10AG1Q8NH19 301 aa9.36□□□□□ -0.91
UPF3A-204ENST00000475218 DERL1Q9BUN8 251 aa9.36□□□□□ -0.91
UPF3A-204ENST00000475218 PSCAO43653 123 aa9.35□□□□□ -0.91
UPF3A-204ENST00000475218 NDUFA6P56556 154 aa9.35□□□□□ -0.91
UPF3A-204ENST00000475218 SSTP61278 116 aa9.35□□□□□ -0.91
UPF3A-204ENST00000475218 HAMPP81172 84 aa9.35□□□□□ -0.91
UPF3A-204ENST00000475218 LBHQ53QV2 105 aaPredicted RBP9.35□□□□□ -0.91
UPF3A-204ENST00000475218 BAGE2Q86Y30 109 aa9.35□□□□□ -0.91
UPF3A-204ENST00000475218 BTF3L4Q96K17 158 aa9.35□□□□□ -0.91
UPF3A-204ENST00000475218 SSBP4Q9BWG4 385 aaPredicted RBP9.35□□□□□ -0.91
UPF3A-204ENST00000475218 VAX2Q9UIW0 290 aa9.35□□□□□ -0.91
UPF3A-204ENST00000475218 A6NJY4 79 aa9.35□□□□□ -0.91
UPF3A-204ENST00000475218 SNAI2O43623 268 aa9.35□□□□□ -0.91
UPF3A-204ENST00000475218 HIST1H2BKO60814 126 aa9.35□□□□□ -0.91
UPF3A-204ENST00000475218 HIST1H2BJP06899 126 aa9.35□□□□□ -0.91
UPF3A-204ENST00000475218 CXCL1P09341 107 aa9.35□□□□□ -0.91
UPF3A-204ENST00000475218 HIST1H2BOP23527 126 aa9.35□□□□□ -0.91
UPF3A-204ENST00000475218 HIST1H2BBP33778 126 aa9.35□□□□□ -0.91
UPF3A-204ENST00000475218 HIST1H2BDP58876 126 aa9.35□□□□□ -0.91
UPF3A-204ENST00000475218 HIST1H2BCP62807 126 aa9.35□□□□□ -0.91
UPF3A-204ENST00000475218 HIST2H2BEQ16778 126 aa9.35□□□□□ -0.91
UPF3A-204ENST00000475218 HIST2H2BFQ5QNW6 126 aaPredicted RBP9.35□□□□□ -0.91
UPF3A-204ENST00000475218 HIST1H2BHQ93079 126 aa9.35□□□□□ -0.91
UPF3A-204ENST00000475218 HIST1H2BNQ99877 126 aa9.35□□□□□ -0.91
UPF3A-204ENST00000475218 HIST1H2BMQ99879 126 aa9.35□□□□□ -0.91
UPF3A-204ENST00000475218 IGLV2-8P01709 118 aa9.34□□□□□ -0.91
UPF3A-204ENST00000475218 UBE2D3P61077 147 aa9.34□□□□□ -0.91
UPF3A-204ENST00000475218 UBE2D2P62837 147 aa9.34□□□□□ -0.91
UPF3A-204ENST00000475218 NIT1Q86X76 327 aa9.34□□□□□ -0.91
UPF3A-204ENST00000475218 HIST3H2BBQ8N257 126 aa9.34□□□□□ -0.91
UPF3A-204ENST00000475218 C11orf52Q96A22 123 aa9.34□□□□□ -0.91
UPF3A-204ENST00000475218 HERC1Q15751 4861 aa9.33□□□□□ -0.92
UPF3A-204ENST00000475218 IGLV5-52A0A0A0MRZ9 124 aa9.33□□□□□ -0.92
UPF3A-204ENST00000475218 MUC21A0A0G2JKD1 596 aa9.33□□□□□ -0.92
UPF3A-204ENST00000475218 MUC21A0A140T8X8 626 aa9.33□□□□□ -0.92
UPF3A-204ENST00000475218 TMEM250H0YL14 139 aa9.33□□□□□ -0.92
UPF3A-204ENST00000475218 PKIAP61925 76 aa9.33□□□□□ -0.92
UPF3A-204ENST00000475218 PYY3Q5JQD4 70 aa9.33□□□□□ -0.92
UPF3A-204ENST00000475218 PRR27Q6MZM9 219 aa9.33□□□□□ -0.92
UPF3A-204ENST00000475218 NTN5Q8WTR8 489 aaPredicted RBP9.33□□□□□ -0.92
UPF3A-204ENST00000475218 FAM30AQ9NZY2 134 aa9.33□□□□□ -0.92
UPF3A-204ENST00000475218 TRBV10-1A0A0K0K1A3 114 aa9.32□□□□□ -0.92
UPF3A-204ENST00000475218 EPM2AB3EWF7 344 aa9.32□□□□□ -0.92
UPF3A-204ENST00000475218 TSTD3H0UI37 97 aa9.32□□□□□ -0.92
UPF3A-204ENST00000475218 OR10G8Q8NGN5 311 aa9.32□□□□□ -0.92
UPF3A-204ENST00000475218 GNG13Q9P2W3 67 aa9.32□□□□□ -0.92
UPF3A-204ENST00000475218 NAT8Q9UHE5 227 aa9.32□□□□□ -0.92
UPF3A-204ENST00000475218 KIF25-AS1Q9Y6Z4 181 aa9.32□□□□□ -0.92
UPF3A-204ENST00000475218 IFITM10A6NMD0 228 aa9.32□□□□□ -0.92
UPF3A-204ENST00000475218 ZNF727A8MUV8 499 aa9.32□□□□□ -0.92
UPF3A-204ENST00000475218 OR5AL1P0C617 328 aa9.32□□□□□ -0.92
UPF3A-204ENST00000475218 COA6Q5JTJ3 125 aaKnown RBP9.32□□□□□ -0.92
UPF3A-204ENST00000475218 MYCBP2O75592 4640 aa9.31□□□□□ -0.92
UPF3A-204ENST00000475218 TRBV7-3A0A075B6L6 115 aa9.31□□□□□ -0.92
UPF3A-204ENST00000475218 LECT2O14960 151 aa9.31□□□□□ -0.92
UPF3A-204ENST00000475218 NEXN-AS1Q8NBZ9 246 aa9.31□□□□□ -0.92
UPF3A-204ENST00000475218 OR10D4PQ8NGN7 298 aa9.31□□□□□ -0.92
UPF3A-204ENST00000475218 MANBALQ9NQG1 85 aa9.31□□□□□ -0.92
UPF3A-204ENST00000475218 TRAV8-3A0A0A6YYJ7 113 aa9.3□□□□□ -0.92
UPF3A-204ENST00000475218 TGIF2-C20orf24A0A0A6YYL0 155 aa9.3□□□□□ -0.92
UPF3A-204ENST00000475218 SMR3BP02814 79 aaPredicted RBP9.3□□□□□ -0.92
UPF3A-204ENST00000475218 TRGC2P03986 189 aa9.3□□□□□ -0.92
UPF3A-204ENST00000475218 CEBPGP53567 150 aa9.3□□□□□ -0.92
UPF3A-204ENST00000475218 RAB4BP61018 213 aa9.3□□□□□ -0.92
UPF3A-204ENST00000475218 Q5VSD8 79 aa9.3□□□□□ -0.92
UPF3A-204ENST00000475218 ANAPC16Q96DE5 110 aa9.3□□□□□ -0.92
UPF3A-204ENST00000475218 TRBV20OR9-2A0A075B6H5 130 aa9.29□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 66.7 ms