RNA–Protein interactions for RNA: ENST00000474426.1

UBR3-208, Transcript of ubiquitin protein ligase E3 component n-recognin 3, humanhuman

TSL 1 (best)

Gene UBR3, Length 4,066 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR3-208ENST00000474426 IGHV4-39P01824 125 aa2.42□□□□□ -2.02
UBR3-208ENST00000474426 ROMO1P60602 79 aa2.42□□□□□ -2.02
UBR3-208ENST00000474426 ASB16-AS1Q495Z4 193 aa2.42□□□□□ -2.02
UBR3-208ENST00000474426 ZFAND2AQ8N6M9 145 aa2.42□□□□□ -2.02
UBR3-208ENST00000474426 ZNF525Q8N782 197 aa2.42□□□□□ -2.02
UBR3-208ENST00000474426 TMEM263Q8WUH6 116 aaKnown RBP2.42□□□□□ -2.02
UBR3-208ENST00000474426 FAM167A-AS1Q96KT0 104 aa2.42□□□□□ -2.02
UBR3-208ENST00000474426 Q96M85 177 aa2.42□□□□□ -2.02
UBR3-208ENST00000474426 A0A087X002 238 aa2.41□□□□□ -2.02
UBR3-208ENST00000474426 LY6G6EA0A0G2JKS1 128 aa2.41□□□□□ -2.02
UBR3-208ENST00000474426 LY6HO94772 140 aa2.41□□□□□ -2.02
UBR3-208ENST00000474426 LHBP01229 141 aa2.41□□□□□ -2.02
UBR3-208ENST00000474426 EGFEM1PQ0D2K5 195 aa2.41□□□□□ -2.02
UBR3-208ENST00000474426 INTS1Q8N201 2190 aaKnown RBP2.41□□□□□ -2.02
UBR3-208ENST00000474426 DOCK10Q96BY6 2186 aa2.41□□□□□ -2.02
UBR3-208ENST00000474426 COL2A1P02458 1487 aaPredicted RBP2.41□□□□□ -2.02
UBR3-208ENST00000474426 DNAJC13O75165 2243 aa2.41□□□□□ -2.02
UBR3-208ENST00000474426 RPL38P63173 70 aaKnown RBP2.41□□□□□ -2.02
UBR3-208ENST00000474426 SPANXN1Q5VSR9 72 aa2.41□□□□□ -2.02
UBR3-208ENST00000474426 FGF23Q9GZV9 251 aaPredicted RBP2.41□□□□□ -2.02
UBR3-208ENST00000474426 ZGRF1Q86YA3 2104 aa2.41□□□□□ -2.02
UBR3-208ENST00000474426 TRAV23DV6A0A075B6W5 121 aa2.41□□□□□ -2.02
UBR3-208ENST00000474426 IGHV3-30P01768 117 aa2.41□□□□□ -2.02
UBR3-208ENST00000474426 IGHV3-30-5P0DP03 117 aa2.41□□□□□ -2.02
UBR3-208ENST00000474426 C1orf134Q5TEV5 83 aa2.41□□□□□ -2.02
UBR3-208ENST00000474426 CYP4F30PQ9H0H9 118 aa2.41□□□□□ -2.02
UBR3-208ENST00000474426 C22orf24Q9Y442 160 aa2.41□□□□□ -2.02
UBR3-208ENST00000474426 COL4A1P02462 1669 aa2.41□□□□□ -2.02
UBR3-208ENST00000474426 XIRP2A4UGR9 3374 aa2.41□□□□□ -2.02
UBR3-208ENST00000474426 UTRNP46939 3433 aa2.41□□□□□ -2.02
UBR3-208ENST00000474426 DNAJC9-AS1A6NH13 148 aa2.4□□□□□ -2.02
UBR3-208ENST00000474426 KRTAP4-16G5E9R7 235 aaPredicted RBP2.4□□□□□ -2.02
UBR3-208ENST00000474426 IGLV2-14P01704 120 aa2.4□□□□□ -2.02
UBR3-208ENST00000474426 TIMM8BQ9Y5J9 83 aaPredicted RBP2.4□□□□□ -2.02
UBR3-208ENST00000474426 KIF26BQ2KJY2 2108 aa2.4□□□□□ -2.03
UBR3-208ENST00000474426 SCGB3A1Q96QR1 104 aa2.4□□□□□ -2.03
UBR3-208ENST00000474426 KIAA0100Q14667 2235 aaKnown RBP2.4□□□□□ -2.03
UBR3-208ENST00000474426 ZNF826PQ6ZT77 177 aa2.4□□□□□ -2.03
UBR3-208ENST00000474426 WFDC6Q9BQY6 131 aa2.4□□□□□ -2.03
UBR3-208ENST00000474426 S4R3C0 116 aa2.4□□□□□ -2.03
UBR3-208ENST00000474426 CENPFP49454 3210 aa2.4□□□□□ -2.03
UBR3-208ENST00000474426 CHKB-CPT1BH3BT56 60 aa2.39□□□□□ -2.03
UBR3-208ENST00000474426 PSCAO43653 123 aa2.39□□□□□ -2.03
UBR3-208ENST00000474426 Q8NDZ9 215 aa2.39□□□□□ -2.03
UBR3-208ENST00000474426 A0A1B0GVT2 93 aa2.39□□□□□ -2.03
UBR3-208ENST00000474426 P0C880 135 aa2.39□□□□□ -2.03
UBR3-208ENST00000474426 IGHV4-38-2P0DP08 117 aa2.39□□□□□ -2.03
UBR3-208ENST00000474426 DEFA4P12838 97 aa2.39□□□□□ -2.03
UBR3-208ENST00000474426 COX6B1P14854 86 aa2.39□□□□□ -2.03
UBR3-208ENST00000474426 EDDM3BP56851 147 aa2.39□□□□□ -2.03
UBR3-208ENST00000474426 CDC42SE2Q9NRR3 84 aa2.39□□□□□ -2.03
UBR3-208ENST00000474426 LHFPL6Q9Y693 200 aa2.39□□□□□ -2.03
UBR3-208ENST00000474426 IGHV3-72A0A0B4J1Y9 119 aa2.39□□□□□ -2.03
UBR3-208ENST00000474426 TRBV10-3A0A0K0K1G6 114 aa2.39□□□□□ -2.03
UBR3-208ENST00000474426 LRCOL1A6NCL2 159 aa2.39□□□□□ -2.03
UBR3-208ENST00000474426 HIGD1CA8MV81 97 aa2.39□□□□□ -2.03
UBR3-208ENST00000474426 C9orf66Q5T8R8 295 aa2.39□□□□□ -2.03
UBR3-208ENST00000474426 FAM53AQ6NSI3 398 aaPredicted RBP2.39□□□□□ -2.03
UBR3-208ENST00000474426 LINC00846Q9NV44 126 aa2.39□□□□□ -2.03
UBR3-208ENST00000474426 PRRC2AP48634 2157 aaKnown RBP2.39□□□□□ -2.03
UBR3-208ENST00000474426 PRSS1P07477 247 aa2.38□□□□□ -2.03
UBR3-208ENST00000474426 RPL27AP46776 148 aaKnown RBP2.38□□□□□ -2.03
UBR3-208ENST00000474426 LY6G5CQ5SRR4 150 aa2.38□□□□□ -2.03
UBR3-208ENST00000474426 C1orf64Q8NEQ6 169 aa2.38□□□□□ -2.03
UBR3-208ENST00000474426 LINC01560Q8TB33 94 aa2.38□□□□□ -2.03
UBR3-208ENST00000474426 C8orf17Q9NRJ1 99 aa2.38□□□□□ -2.03
UBR3-208ENST00000474426 SPEGQ15772 3267 aa2.38□□□□□ -2.03
UBR3-208ENST00000474426 TRAV40A0A0B4J280 105 aa2.38□□□□□ -2.03
UBR3-208ENST00000474426 ZNF815PA8K554 130 aa2.38□□□□□ -2.03
UBR3-208ENST00000474426 TMEM14DPA8MWL7 114 aa2.38□□□□□ -2.03
UBR3-208ENST00000474426 ERC2-IT1O76042 136 aa2.38□□□□□ -2.03
UBR3-208ENST00000474426 DSCR9P59020 149 aa2.38□□□□□ -2.03
UBR3-208ENST00000474426 CSNK1G2-AS1Q8NCQ2 148 aa2.38□□□□□ -2.03
UBR3-208ENST00000474426 KIF25-AS1Q9Y6Z4 181 aa2.38□□□□□ -2.03
UBR3-208ENST00000474426 RP1P56715 2156 aa2.38□□□□□ -2.03
UBR3-208ENST00000474426 A0A0J9YY99 117 aa2.38□□□□□ -2.03
UBR3-208ENST00000474426 LINC01546A6NGU7 62 aa2.38□□□□□ -2.03
UBR3-208ENST00000474426 ABCA4P78363 2273 aa2.38□□□□□ -2.03
UBR3-208ENST00000474426 IGLV5-45A0A087WSX0 123 aa2.37□□□□□ -2.03
UBR3-208ENST00000474426 A0A1B0GW54 56 aa2.37□□□□□ -2.03
UBR3-208ENST00000474426 RPL37AP8A6NKH3 93 aa2.37□□□□□ -2.03
UBR3-208ENST00000474426 NTN3O00634 580 aaPredicted RBP2.37□□□□□ -2.03
UBR3-208ENST00000474426 IGHV3-13P01766 116 aa2.37□□□□□ -2.03
UBR3-208ENST00000474426 TTTY10Q9BZA0 68 aa2.37□□□□□ -2.03
UBR3-208ENST00000474426 MUC3AQ02505 3323 aa2.37□□□□□ -2.03
UBR3-208ENST00000474426 PRRC2BQ5JSZ5 2229 aaKnown RBP2.37□□□□□ -2.03
UBR3-208ENST00000474426 IGHV3-43A0A0B4J1X8 118 aa2.37□□□□□ -2.03
UBR3-208ENST00000474426 IGLV2-23P01705 113 aa2.37□□□□□ -2.03
UBR3-208ENST00000474426 ATP5EP2Q5VTU8 51 aa2.37□□□□□ -2.03
UBR3-208ENST00000474426 CNEP1R1Q8N9A8 125 aa2.37□□□□□ -2.03
UBR3-208ENST00000474426 ZNF355PQ9NSJ1 428 aa2.37□□□□□ -2.03
UBR3-208ENST00000474426 C5orf42Q9H799 3197 aa2.37□□□□□ -2.03
UBR3-208ENST00000474426 BRCA2P51587 3418 aa2.37□□□□□ -2.03
UBR3-208ENST00000474426 ARFGEF3Q5TH69 2177 aa2.37□□□□□ -2.03
UBR3-208ENST00000474426 BGLAPP02818 100 aa2.37□□□□□ -2.03
UBR3-208ENST00000474426 ARMS2P0C7Q2 107 aa2.37□□□□□ -2.03
UBR3-208ENST00000474426 FDCSPQ8NFU4 85 aa2.37□□□□□ -2.03
UBR3-208ENST00000474426 RPL36ALQ969Q0 106 aaKnown RBP2.37□□□□□ -2.03
UBR3-208ENST00000474426 IGLV5-52A0A0A0MRZ9 124 aa2.37□□□□□ -2.03
UBR3-208ENST00000474426 C11orf86A6NJI1 115 aa2.37□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms