RNA–Protein interactions for RNA: ENST00000471188.5

VPS50-210, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 3,254 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-210ENST00000471188 RPL18AQ02543 176 aaKnown RBP3.18□□□□□ -1.9
VPS50-210ENST00000471188 FAM74A4Q5TZK3 123 aa3.18□□□□□ -1.9
VPS50-210ENST00000471188 Q5XG85 94 aa3.18□□□□□ -1.9
VPS50-210ENST00000471188 LINC00336Q6ZUF6 198 aa3.18□□□□□ -1.9
VPS50-210ENST00000471188 WFDC11Q8NEX6 87 aa3.18□□□□□ -1.9
VPS50-210ENST00000471188 C2orf48Q96LS8 159 aa3.18□□□□□ -1.9
VPS50-210ENST00000471188 AMELXQ99217 191 aa3.18□□□□□ -1.9
VPS50-210ENST00000471188 TIMM21Q9BVV7 248 aa3.18□□□□□ -1.9
VPS50-210ENST00000471188 DYNLRB1Q9NP97 96 aa3.18□□□□□ -1.9
VPS50-210ENST00000471188 TRBV7-1A0A0A6YYK4 115 aa3.18□□□□□ -1.9
VPS50-210ENST00000471188 DNAL4O96015 105 aa3.18□□□□□ -1.9
VPS50-210ENST00000471188 IGHV1-46P01743 117 aa3.18□□□□□ -1.9
VPS50-210ENST00000471188 EDN2P20800 178 aa3.18□□□□□ -1.9
VPS50-210ENST00000471188 MALP21145 153 aa3.18□□□□□ -1.9
VPS50-210ENST00000471188 CIRBPQ14011 172 aaKnown RBP3.18□□□□□ -1.9
VPS50-210ENST00000471188 SERP2Q8N6R1 65 aa3.18□□□□□ -1.9
VPS50-210ENST00000471188 MBD3L2Q8NHZ7 208 aaPredicted RBP3.18□□□□□ -1.9
VPS50-210ENST00000471188 PRO0628Q9UI54 55 aa3.18□□□□□ -1.9
VPS50-210ENST00000471188 SMAD5-AS1Q9Y6J3 95 aa3.18□□□□□ -1.9
VPS50-210ENST00000471188 SMG1Q96Q15 3661 aaKnown RBP3.18□□□□□ -1.9
VPS50-210ENST00000471188 A0A087WWL8 130 aa3.18□□□□□ -1.9
VPS50-210ENST00000471188 IGHV1-69DA0A0B4J2H0 117 aa3.18□□□□□ -1.9
VPS50-210ENST00000471188 LY6G6EA0A0G2JKS1 128 aa3.18□□□□□ -1.9
VPS50-210ENST00000471188 IGIPA6NJ69 53 aa3.18□□□□□ -1.9
VPS50-210ENST00000471188 PPP1R17O96001 155 aa3.18□□□□□ -1.9
VPS50-210ENST00000471188 BAALC-AS2P0C853 105 aa3.18□□□□□ -1.9
VPS50-210ENST00000471188 CD59P13987 128 aa3.18□□□□□ -1.9
VPS50-210ENST00000471188 LOXP28300 417 aaPredicted RBP3.18□□□□□ -1.9
VPS50-210ENST00000471188 SEC61GP60059 68 aa3.18□□□□□ -1.9
VPS50-210ENST00000471188 ZNF876PQ49A33 203 aa3.18□□□□□ -1.9
VPS50-210ENST00000471188 TMEM141Q96I45 108 aa3.18□□□□□ -1.9
VPS50-210ENST00000471188 LINC00574Q9H8X3 128 aa3.18□□□□□ -1.9
VPS50-210ENST00000471188 SIT1Q9Y3P8 196 aa3.18□□□□□ -1.9
VPS50-210ENST00000471188 U3KQA8 63 aa3.18□□□□□ -1.9
VPS50-210ENST00000471188 DMXL2Q8TDJ6 3036 aa3.17□□□□□ -1.9
VPS50-210ENST00000471188 IGHV1-3A0A0C4DH29 117 aa3.17□□□□□ -1.9
VPS50-210ENST00000471188 SDHAF1A6NFY7 115 aa3.17□□□□□ -1.9
VPS50-210ENST00000471188 F8WDY8 70 aa3.17□□□□□ -1.9
VPS50-210ENST00000471188 NXPH4O95158 308 aa3.17□□□□□ -1.9
VPS50-210ENST00000471188 CXCL5P42830 114 aa3.17□□□□□ -1.9
VPS50-210ENST00000471188 TIRAPP58753 221 aa3.17□□□□□ -1.9
VPS50-210ENST00000471188 KRTAP19-4Q3LI73 84 aa3.17□□□□□ -1.9
VPS50-210ENST00000471188 DEFB121Q5J5C9 76 aa3.17□□□□□ -1.9
VPS50-210ENST00000471188 LYPD2Q6UXB3 125 aa3.17□□□□□ -1.9
VPS50-210ENST00000471188 NUP37Q8NFH4 326 aa3.17□□□□□ -1.9
VPS50-210ENST00000471188 NDUFA12Q9UI09 145 aa3.17□□□□□ -1.9
VPS50-210ENST00000471188 SPTA1P02549 2419 aa3.17□□□□□ -1.9
VPS50-210ENST00000471188 IGKV3-7A0A075B6H7 116 aa3.17□□□□□ -1.9
VPS50-210ENST00000471188 FAM236DA0A1B0GTK5 79 aa3.17□□□□□ -1.9
VPS50-210ENST00000471188 VCYO14598 125 aa3.17□□□□□ -1.9
VPS50-210ENST00000471188 IGHV1-8P0DP01 117 aa3.17□□□□□ -1.9
VPS50-210ENST00000471188 IGHV3-30-3P0DP02 117 aa3.17□□□□□ -1.9
VPS50-210ENST00000471188 FAM236CP0DP71 79 aa3.17□□□□□ -1.9
VPS50-210ENST00000471188 ADAMTSL4-AS1Q5T5F5 129 aa3.17□□□□□ -1.9
VPS50-210ENST00000471188 C5orf38Q86SI9 138 aa3.17□□□□□ -1.9
VPS50-210ENST00000471188 C16orf92Q96LL3 132 aa3.17□□□□□ -1.9
VPS50-210ENST00000471188 A8MZ25 164 aa3.17□□□□□ -1.9
VPS50-210ENST00000471188 IGF1P05019 195 aa3.17□□□□□ -1.9
VPS50-210ENST00000471188 C9orf106Q8NAJ2 232 aa3.17□□□□□ -1.9
VPS50-210ENST00000471188 PRSS33Q8NF86 280 aa3.17□□□□□ -1.9
VPS50-210ENST00000471188 TIMM17AQ99595 171 aa3.17□□□□□ -1.9
VPS50-210ENST00000471188 TMEM243Q9BU79 118 aa3.17□□□□□ -1.9
VPS50-210ENST00000471188 V9GYY9 64 aa3.17□□□□□ -1.9
VPS50-210ENST00000471188 LOC400499M0QZD8 3231 aa3.16□□□□□ -1.9
VPS50-210ENST00000471188 PTPRZ1P23471 2315 aaPredicted RBP3.16□□□□□ -1.9
VPS50-210ENST00000471188 USP17L23D6RBM5 183 aa3.16□□□□□ -1.9
VPS50-210ENST00000471188 GNRH2O43555 120 aa3.16□□□□□ -1.9
VPS50-210ENST00000471188 IGLV1-44P01699 117 aa3.16□□□□□ -1.9
VPS50-210ENST00000471188 INAFM2P0DMQ5 153 aa3.16□□□□□ -1.9
VPS50-210ENST00000471188 HOXD3P31249 432 aaPredicted RBP3.16□□□□□ -1.9
VPS50-210ENST00000471188 RPL11P62913 178 aaKnown RBP3.16□□□□□ -1.9
VPS50-210ENST00000471188 RNASE13Q5GAN3 156 aaKnown RBP3.16□□□□□ -1.9
VPS50-210ENST00000471188 TMEM61Q8N0U2 210 aa3.16□□□□□ -1.9
VPS50-210ENST00000471188 LINC00311Q8N616 119 aa3.16□□□□□ -1.9
VPS50-210ENST00000471188 SAP25Q8TEE9 199 aa3.16□□□□□ -1.9
VPS50-210ENST00000471188 BRK1Q8WUW1 75 aa3.16□□□□□ -1.9
VPS50-210ENST00000471188 ZNF625Q96I27 306 aaPredicted RBP3.16□□□□□ -1.9
VPS50-210ENST00000471188 LINC01600Q96MT4 127 aa3.16□□□□□ -1.9
VPS50-210ENST00000471188 RNASE4P34096 147 aaKnown RBP3.16□□□□□ -1.9
VPS50-210ENST00000471188 PRR9Q5T870 116 aa3.16□□□□□ -1.9
VPS50-210ENST00000471188 FAM223AQ8IWN6 122 aa3.16□□□□□ -1.9
VPS50-210ENST00000471188 C20orf197Q8N268 126 aa3.16□□□□□ -1.9
VPS50-210ENST00000471188 DCANP1Q8TF63 244 aa3.16□□□□□ -1.9
VPS50-210ENST00000471188 Q9HAA7 133 aa3.16□□□□□ -1.9
VPS50-210ENST00000471188 SORL1Q92673 2214 aa3.15□□□□□ -1.9
VPS50-210ENST00000471188 IGHV4-4A0A075B6R2 117 aa3.15□□□□□ -1.9
VPS50-210ENST00000471188 TRAV21A0A0B4J279 112 aa3.15□□□□□ -1.9
VPS50-210ENST00000471188 BUB1B-PAK6H3BSN5 160 aa3.15□□□□□ -1.9
VPS50-210ENST00000471188 IGHG3P01860 377 aa3.15□□□□□ -1.9
VPS50-210ENST00000471188 DEFB1P60022 68 aa3.15□□□□□ -1.9
VPS50-210ENST00000471188 MIAQ16674 131 aa3.15□□□□□ -1.9
VPS50-210ENST00000471188 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa3.15□□□□□ -1.9
VPS50-210ENST00000471188 GPHB5Q86YW7 130 aa3.15□□□□□ -1.9
VPS50-210ENST00000471188 SLC25A15Q9Y619 301 aa3.15□□□□□ -1.9
VPS50-210ENST00000471188 GVINP1Q7Z2Y8 2422 aa3.15□□□□□ -1.91
VPS50-210ENST00000471188 NBR2O15453 112 aa3.15□□□□□ -1.91
VPS50-210ENST00000471188 CD28P10747 220 aa3.15□□□□□ -1.91
VPS50-210ENST00000471188 FHL2Q14192 279 aa3.15□□□□□ -1.91
VPS50-210ENST00000471188 SUMO4Q6EEV6 95 aa3.15□□□□□ -1.91
VPS50-210ENST00000471188 C14orf132Q9NPU4 83 aa3.15□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms