RNA–Protein interactions for RNA: ENST00000470076.1

COL7A1-208, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 651 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-208ENST00000470076 HMSDA8MTL9 139 aa11.4□□□□□ -0.58
COL7A1-208ENST00000470076 F5H697 171 aa11.4□□□□□ -0.58
COL7A1-208ENST00000470076 ANGP03950 147 aaKnown RBP11.4□□□□□ -0.58
COL7A1-208ENST00000470076 TMUB2Q71RG4 321 aa11.4□□□□□ -0.58
COL7A1-208ENST00000470076 CHCHD5Q9BSY4 110 aa11.4□□□□□ -0.58
COL7A1-208ENST00000470076 A0A0D9SG52 128 aa11.39□□□□□ -0.59
COL7A1-208ENST00000470076 H2AFB1P0C5Y9 115 aa11.39□□□□□ -0.59
COL7A1-208ENST00000470076 MIAQ16674 131 aa11.39□□□□□ -0.59
COL7A1-208ENST00000470076 CIRBP-AS1Q8TBR5 109 aa11.39□□□□□ -0.59
COL7A1-208ENST00000470076 VAX2Q9UIW0 290 aa11.39□□□□□ -0.59
COL7A1-208ENST00000470076 MUC21A0A0G2JKD1 596 aa11.38□□□□□ -0.59
COL7A1-208ENST00000470076 MUC21A0A140T8X8 626 aa11.38□□□□□ -0.59
COL7A1-208ENST00000470076 KANTRA0A1W2PQU2 76 aa11.38□□□□□ -0.59
COL7A1-208ENST00000470076 BCL2L11O43521 198 aa11.38□□□□□ -0.59
COL7A1-208ENST00000470076 SMIM17P0DL12 118 aa11.38□□□□□ -0.59
COL7A1-208ENST00000470076 EIF5AP63241 154 aaKnown RBP11.38□□□□□ -0.59
COL7A1-208ENST00000470076 AP1S3Q96PC3 154 aa11.38□□□□□ -0.59
COL7A1-208ENST00000470076 RPL35P42766 123 aaKnown RBP11.37□□□□□ -0.59
COL7A1-208ENST00000470076 KIF25-AS1Q9Y6Z4 181 aa11.37□□□□□ -0.59
COL7A1-208ENST00000470076 IGLV2-8P01709 118 aa11.36□□□□□ -0.59
COL7A1-208ENST00000470076 SSTP61278 116 aa11.36□□□□□ -0.59
COL7A1-208ENST00000470076 NTM-AS1Q6ZSK4 140 aa11.36□□□□□ -0.59
COL7A1-208ENST00000470076 USP17L23D6RBM5 183 aa11.35□□□□□ -0.59
COL7A1-208ENST00000470076 HLA-DQA1P01909 254 aa11.35□□□□□ -0.59
COL7A1-208ENST00000470076 KRTAP10-4P60372 401 aaPredicted RBP11.35□□□□□ -0.59
COL7A1-208ENST00000470076 DERL1Q9BUN8 251 aa11.35□□□□□ -0.59
COL7A1-208ENST00000470076 MANBALQ9NQG1 85 aa11.35□□□□□ -0.59
COL7A1-208ENST00000470076 PRR34Q9NV39 138 aa11.35□□□□□ -0.59
COL7A1-208ENST00000470076 TRBV25-1A0A075B6N4 114 aa11.34□□□□□ -0.59
COL7A1-208ENST00000470076 RBX1P62877 108 aa11.34□□□□□ -0.59
COL7A1-208ENST00000470076 C11orf52Q96A22 123 aa11.34□□□□□ -0.59
COL7A1-208ENST00000470076 DGAT2L7PQ6IED9 249 aa11.33□□□□□ -0.6
COL7A1-208ENST00000470076 GNG13Q9P2W3 67 aa11.33□□□□□ -0.6
COL7A1-208ENST00000470076 LRP1Q07954 4544 aaKnown RBP11.33□□□□□ -0.6
COL7A1-208ENST00000470076 H7C1H1 209 aa11.32□□□□□ -0.6
COL7A1-208ENST00000470076 PRSS1P07477 247 aa11.32□□□□□ -0.6
COL7A1-208ENST00000470076 IGLC6P0CF74 106 aa11.32□□□□□ -0.6
COL7A1-208ENST00000470076 RPS20P60866 119 aaKnown RBP11.32□□□□□ -0.6
COL7A1-208ENST00000470076 GAGE6Q13070 117 aa11.32□□□□□ -0.6
COL7A1-208ENST00000470076 IQCJQ1A5X6 159 aa11.32□□□□□ -0.6
COL7A1-208ENST00000470076 LINC00269Q8N2A0 174 aa11.32□□□□□ -0.6
COL7A1-208ENST00000470076 DAZAP1Q96EP5 407 aaKnown RBP11.32□□□□□ -0.6
COL7A1-208ENST00000470076 TRAV1-1A0A0B4J248 108 aa11.31□□□□□ -0.6
COL7A1-208ENST00000470076 IGHV1-24A0A0C4DH33 117 aa11.31□□□□□ -0.6
COL7A1-208ENST00000470076 M0QY20 66 aa11.31□□□□□ -0.6
COL7A1-208ENST00000470076 CCL20P78556 96 aa11.31□□□□□ -0.6
COL7A1-208ENST00000470076 CENPWQ5EE01 88 aa11.31□□□□□ -0.6
COL7A1-208ENST00000470076 CLPSL2Q6UWE3 100 aa11.31□□□□□ -0.6
COL7A1-208ENST00000470076 FER1L6-AS1Q8NA97 138 aa11.31□□□□□ -0.6
COL7A1-208ENST00000470076 TPPP3Q9BW30 176 aa11.31□□□□□ -0.6
COL7A1-208ENST00000470076 OXTP01178 125 aa11.3□□□□□ -0.6
COL7A1-208ENST00000470076 MGPP08493 103 aa11.3□□□□□ -0.6
COL7A1-208ENST00000470076 GZMBP10144 247 aa11.3□□□□□ -0.6
COL7A1-208ENST00000470076 CACNG7P62955 275 aa11.3□□□□□ -0.6
COL7A1-208ENST00000470076 KRTAP26-1Q6PEX3 210 aa11.3□□□□□ -0.6
COL7A1-208ENST00000470076 C9orf163Q8N9P6 203 aa11.3□□□□□ -0.6
COL7A1-208ENST00000470076 OR2D3Q8NGH3 330 aa11.3□□□□□ -0.6
COL7A1-208ENST00000470076 SMIM12Q96EX1 92 aa11.3□□□□□ -0.6
COL7A1-208ENST00000470076 C19orf71A6NCJ1 209 aa11.29□□□□□ -0.6
COL7A1-208ENST00000470076 TEX46H3BTG2 121 aa11.29□□□□□ -0.6
COL7A1-208ENST00000470076 RAB5CP51148 216 aa11.29□□□□□ -0.6
COL7A1-208ENST00000470076 SUMO4Q6EEV6 95 aa11.29□□□□□ -0.6
COL7A1-208ENST00000470076 FAT3Q8TDW7 4589 aa11.28□□□□□ -0.6
COL7A1-208ENST00000470076 XKRY2A2RUG3 117 aa11.28□□□□□ -0.6
COL7A1-208ENST00000470076 F2Z2F3 143 aa11.28□□□□□ -0.6
COL7A1-208ENST00000470076 GNG4P50150 75 aa11.28□□□□□ -0.6
COL7A1-208ENST00000470076 REG3AQ06141 175 aa11.28□□□□□ -0.6
COL7A1-208ENST00000470076 EIF5AL1Q6IS14 154 aaKnown RBP11.28□□□□□ -0.6
COL7A1-208ENST00000470076 CLRN3Q8NCR9 226 aa11.28□□□□□ -0.6
COL7A1-208ENST00000470076 RPL37AP61513 92 aaKnown RBP11.27□□□□□ -0.61
COL7A1-208ENST00000470076 SERTAD4-AS1Q5TG53 156 aa11.27□□□□□ -0.61
COL7A1-208ENST00000470076 RASL11AQ6T310 242 aa11.27□□□□□ -0.61
COL7A1-208ENST00000470076 TRAV8-4A0A0B4J246 113 aa11.26□□□□□ -0.61
COL7A1-208ENST00000470076 A0A1B0GUV1 79 aa11.26□□□□□ -0.61
COL7A1-208ENST00000470076 RAB19A4D1S5 217 aa11.26□□□□□ -0.61
COL7A1-208ENST00000470076 PDE6DO43924 150 aa11.26□□□□□ -0.61
COL7A1-208ENST00000470076 P01737 135 aa11.26□□□□□ -0.61
COL7A1-208ENST00000470076 TRGC1P0CF51 173 aa11.26□□□□□ -0.61
COL7A1-208ENST00000470076 NKX2-5P52952 324 aaPredicted RBP11.26□□□□□ -0.61
COL7A1-208ENST00000470076 MEF2BQ02080 365 aaPredicted RBP11.26□□□□□ -0.61
COL7A1-208ENST00000470076 TMEM243Q9BU79 118 aa11.26□□□□□ -0.61
COL7A1-208ENST00000470076 IGLV10-54A0A075B6I4 117 aa11.25□□□□□ -0.61
COL7A1-208ENST00000470076 C20orf203Q8NBC4 194 aa11.25□□□□□ -0.61
COL7A1-208ENST00000470076 PGLYRP4Q96LB8 373 aa11.25□□□□□ -0.61
COL7A1-208ENST00000470076 NIT2Q9NQR4 276 aa11.25□□□□□ -0.61
COL7A1-208ENST00000470076 BIN3Q9NQY0 253 aa11.25□□□□□ -0.61
COL7A1-208ENST00000470076 PKHD1L1Q86WI1 4243 aa11.25□□□□□ -0.61
COL7A1-208ENST00000470076 IFNA1P01562 189 aa11.24□□□□□ -0.61
COL7A1-208ENST00000470076 LYZL1Q6UWQ5 148 aa11.24□□□□□ -0.61
COL7A1-208ENST00000470076 SDIM1Q6ZPB5 146 aa11.24□□□□□ -0.61
COL7A1-208ENST00000470076 DPH3P1Q9H4G8 78 aa11.24□□□□□ -0.61
COL7A1-208ENST00000470076 MED9Q9NWA0 146 aa11.24□□□□□ -0.61
COL7A1-208ENST00000470076 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP11.24□□□□□ -0.61
COL7A1-208ENST00000470076 TRBV20OR9-2A0A075B6H5 130 aa11.23□□□□□ -0.61
COL7A1-208ENST00000470076 NTF3P20783 257 aa11.23□□□□□ -0.61
COL7A1-208ENST00000470076 SULT1A2P50226 295 aa11.23□□□□□ -0.61
COL7A1-208ENST00000470076 CNBPP62633 177 aaKnown RBP11.23□□□□□ -0.61
COL7A1-208ENST00000470076 IGLV4-60A0A075B6I1 120 aa11.22□□□□□ -0.61
COL7A1-208ENST00000470076 WDR73Q6P4I2 378 aa11.22□□□□□ -0.61
COL7A1-208ENST00000470076 C9orf62Q8N4C0 152 aa11.22□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 69.4 ms