RNA–Protein interactions for RNA: ENST00000468654.1

SHANK1-206, Transcript of SH3 and multiple ankyrin repeat domains 1, humanhuman

TSL 3

Gene SHANK1, Length 668 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1-206ENST00000468654 TMEM262E9PQX1 116 aa13.8□□□□□ -0.2
SHANK1-206ENST00000468654 LINC01620Q4KN68 170 aa13.8□□□□□ -0.2
SHANK1-206ENST00000468654 MPV17L2Q567V2 206 aa13.8□□□□□ -0.2
SHANK1-206ENST00000468654 VAX2Q9UIW0 290 aa13.8□□□□□ -0.2
SHANK1-206ENST00000468654 F5H697 171 aa13.79□□□□□ -0.2
SHANK1-206ENST00000468654 PKIAP61925 76 aa13.79□□□□□ -0.2
SHANK1-206ENST00000468654 CENPWQ5EE01 88 aa13.79□□□□□ -0.2
SHANK1-206ENST00000468654 ENHOQ6UWT2 76 aa13.79□□□□□ -0.2
SHANK1-206ENST00000468654 SREK1IP1Q8N9Q2 155 aaPredicted RBP13.79□□□□□ -0.2
SHANK1-206ENST00000468654 C1orf43Q9BWL3 253 aa13.79□□□□□ -0.2
SHANK1-206ENST00000468654 CRPP02741 224 aa13.78□□□□□ -0.2
SHANK1-206ENST00000468654 SMIM17P0DL12 118 aa13.78□□□□□ -0.2
SHANK1-206ENST00000468654 RAB5CP51148 216 aa13.78□□□□□ -0.2
SHANK1-206ENST00000468654 TMEM97Q5BJF2 176 aa13.78□□□□□ -0.2
SHANK1-206ENST00000468654 LINC00528Q8N1L1 170 aa13.78□□□□□ -0.2
SHANK1-206ENST00000468654 C15orf54Q8N8G6 183 aa13.78□□□□□ -0.2
SHANK1-206ENST00000468654 IGLV2-8P01709 118 aa13.77□□□□□ -0.21
SHANK1-206ENST00000468654 PLA2G1BP04054 148 aaKnown RBP13.77□□□□□ -0.21
SHANK1-206ENST00000468654 IGLC6P0CF74 106 aa13.77□□□□□ -0.21
SHANK1-206ENST00000468654 SSTP61278 116 aa13.77□□□□□ -0.21
SHANK1-206ENST00000468654 NTM-AS1Q6ZSK4 140 aa13.77□□□□□ -0.21
SHANK1-206ENST00000468654 SCXQ7RTU7 201 aa13.77□□□□□ -0.21
SHANK1-206ENST00000468654 CHCHD5Q9BSY4 110 aa13.77□□□□□ -0.21
SHANK1-206ENST00000468654 ANGP03950 147 aaKnown RBP13.76□□□□□ -0.21
SHANK1-206ENST00000468654 C14orf177Q52M58 125 aa13.76□□□□□ -0.21
SHANK1-206ENST00000468654 C19orf71A6NCJ1 209 aa13.75□□□□□ -0.21
SHANK1-206ENST00000468654 GZMBP10144 247 aa13.75□□□□□ -0.21
SHANK1-206ENST00000468654 RPS20P60866 119 aaKnown RBP13.75□□□□□ -0.21
SHANK1-206ENST00000468654 EIF5AL1Q6IS14 154 aaKnown RBP13.75□□□□□ -0.21
SHANK1-206ENST00000468654 FER1L6-AS1Q8NA97 138 aa13.75□□□□□ -0.21
SHANK1-206ENST00000468654 OR2D3Q8NGH3 330 aa13.75□□□□□ -0.21
SHANK1-206ENST00000468654 SMIM12Q96EX1 92 aa13.75□□□□□ -0.21
SHANK1-206ENST00000468654 TEX46H3BTG2 121 aa13.74□□□□□ -0.21
SHANK1-206ENST00000468654 SULT1A2P50226 295 aa13.74□□□□□ -0.21
SHANK1-206ENST00000468654 DAZAP1Q96EP5 407 aaKnown RBP13.74□□□□□ -0.21
SHANK1-206ENST00000468654 PKHD1L1Q86WI1 4243 aa13.74□□□□□ -0.21
SHANK1-206ENST00000468654 MEF2BQ02080 365 aaPredicted RBP13.73□□□□□ -0.21
SHANK1-206ENST00000468654 MIAQ16674 131 aa13.73□□□□□ -0.21
SHANK1-206ENST00000468654 CHAC1Q9BUX1 264 aa13.73□□□□□ -0.21
SHANK1-206ENST00000468654 TPPP3Q9BW30 176 aa13.73□□□□□ -0.21
SHANK1-206ENST00000468654 TRBV25-1A0A075B6N4 114 aa13.72□□□□□ -0.21
SHANK1-206ENST00000468654 RAB19A4D1S5 217 aa13.72□□□□□ -0.21
SHANK1-206ENST00000468654 J3QL48 77 aa13.72□□□□□ -0.21
SHANK1-206ENST00000468654 M0QY20 66 aa13.72□□□□□ -0.21
SHANK1-206ENST00000468654 PDE6DO43924 150 aa13.72□□□□□ -0.21
SHANK1-206ENST00000468654 GNG4P50150 75 aa13.72□□□□□ -0.21
SHANK1-206ENST00000468654 RBX1P62877 108 aa13.72□□□□□ -0.21
SHANK1-206ENST00000468654 CACNG7P62955 275 aa13.72□□□□□ -0.21
SHANK1-206ENST00000468654 PRR34Q9NV39 138 aa13.72□□□□□ -0.21
SHANK1-206ENST00000468654 LRP1Q07954 4544 aaKnown RBP13.72□□□□□ -0.21
SHANK1-206ENST00000468654 TRBV20OR9-2A0A075B6H5 130 aa13.71□□□□□ -0.21
SHANK1-206ENST00000468654 MGPP08493 103 aa13.71□□□□□ -0.21
SHANK1-206ENST00000468654 IQCJQ1A5X6 159 aa13.71□□□□□ -0.21
SHANK1-206ENST00000468654 XKRY2A2RUG3 117 aa13.7□□□□□ -0.22
SHANK1-206ENST00000468654 USP17L23D6RBM5 183 aa13.7□□□□□ -0.22
SHANK1-206ENST00000468654 H7C1H1 209 aa13.7□□□□□ -0.22
SHANK1-206ENST00000468654 IFNA1P01562 189 aa13.7□□□□□ -0.22
SHANK1-206ENST00000468654 HLA-DQA1P01909 254 aa13.7□□□□□ -0.22
SHANK1-206ENST00000468654 BCL2P10415 239 aa13.7□□□□□ -0.22
SHANK1-206ENST00000468654 GAGE6Q13070 117 aa13.7□□□□□ -0.22
SHANK1-206ENST00000468654 SUMO4Q6EEV6 95 aa13.7□□□□□ -0.22
SHANK1-206ENST00000468654 IGHV1-24A0A0C4DH33 117 aa13.69□□□□□ -0.22
SHANK1-206ENST00000468654 P01737 135 aa13.69□□□□□ -0.22
SHANK1-206ENST00000468654 TCTE3Q8IZS6 198 aa13.69□□□□□ -0.22
SHANK1-206ENST00000468654 CIRBP-AS1Q8TBR5 109 aa13.69□□□□□ -0.22
SHANK1-206ENST00000468654 F2Z2F3 143 aa13.68□□□□□ -0.22
SHANK1-206ENST00000468654 CLPSL2Q6UWE3 100 aa13.68□□□□□ -0.22
SHANK1-206ENST00000468654 LINC00269Q8N2A0 174 aa13.68□□□□□ -0.22
SHANK1-206ENST00000468654 MED9Q9NWA0 146 aa13.68□□□□□ -0.22
SHANK1-206ENST00000468654 FAT3Q8TDW7 4589 aa13.68□□□□□ -0.22
SHANK1-206ENST00000468654 KRTAP29-1A8MX34 341 aaPredicted RBP13.67□□□□□ -0.22
SHANK1-206ENST00000468654 KRTAP26-1Q6PEX3 210 aa13.67□□□□□ -0.22
SHANK1-206ENST00000468654 BIN3Q9NQY0 253 aa13.67□□□□□ -0.22
SHANK1-206ENST00000468654 TRGC1P0CF51 173 aa13.66□□□□□ -0.22
SHANK1-206ENST00000468654 KRTAP10-4P60372 401 aaPredicted RBP13.66□□□□□ -0.22
SHANK1-206ENST00000468654 RASL11AQ6T310 242 aa13.66□□□□□ -0.22
SHANK1-206ENST00000468654 LYZL1Q6UWQ5 148 aa13.66□□□□□ -0.22
SHANK1-206ENST00000468654 SLC51BQ86UW2 128 aa13.66□□□□□ -0.22
SHANK1-206ENST00000468654 DEFB104AQ8WTQ1 72 aa13.66□□□□□ -0.22
SHANK1-206ENST00000468654 PRSS1P07477 247 aa13.65□□□□□ -0.22
SHANK1-206ENST00000468654 CTRLP40313 264 aa13.65□□□□□ -0.22
SHANK1-206ENST00000468654 NKX2-5P52952 324 aaPredicted RBP13.65□□□□□ -0.22
SHANK1-206ENST00000468654 DPH3P1Q9H4G8 78 aa13.65□□□□□ -0.22
SHANK1-206ENST00000468654 HMCN2Q8NDA2 5059 aa13.65□□□□□ -0.22
SHANK1-206ENST00000468654 TAGLN2P37802 199 aaKnown RBP13.64□□□□□ -0.23
SHANK1-206ENST00000468654 PGLYRP4Q96LB8 373 aa13.64□□□□□ -0.23
SHANK1-206ENST00000468654 NTF3P20783 257 aa13.63□□□□□ -0.23
SHANK1-206ENST00000468654 WDR73Q6P4I2 378 aa13.63□□□□□ -0.23
SHANK1-206ENST00000468654 C9orf62Q8N4C0 152 aa13.63□□□□□ -0.23
SHANK1-206ENST00000468654 C20orf203Q8NBC4 194 aa13.63□□□□□ -0.23
SHANK1-206ENST00000468654 TMEM243Q9BU79 118 aa13.63□□□□□ -0.23
SHANK1-206ENST00000468654 CNFNQ9BYD5 112 aa13.63□□□□□ -0.23
SHANK1-206ENST00000468654 REG3AQ06141 175 aa13.62□□□□□ -0.23
SHANK1-206ENST00000468654 DGAT2L7PQ6IED9 249 aa13.62□□□□□ -0.23
SHANK1-206ENST00000468654 NUDT10Q8NFP7 164 aa13.62□□□□□ -0.23
SHANK1-206ENST00000468654 NUDT11Q96G61 164 aa13.62□□□□□ -0.23
SHANK1-206ENST00000468654 NIT2Q9NQR4 276 aa13.62□□□□□ -0.23
SHANK1-206ENST00000468654 A0A1B0GUV1 79 aa13.61□□□□□ -0.23
SHANK1-206ENST00000468654 C9orf163Q8N9P6 203 aa13.61□□□□□ -0.23
SHANK1-206ENST00000468654 IGLV10-54A0A075B6I4 117 aa13.6□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms