RNA–Protein interactions for RNA: ENST00000466897.1

NPHP4-205, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 1,192 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-205ENST00000466897 NEXN-AS1Q8NBZ9 246 aa10.54□□□□□ -0.72
NPHP4-205ENST00000466897 ATP6V1G1O75348 118 aa10.53□□□□□ -0.72
NPHP4-205ENST00000466897 PPP1R17O96001 155 aa10.53□□□□□ -0.72
NPHP4-205ENST00000466897 P0DMU3 169 aa10.53□□□□□ -0.72
NPHP4-205ENST00000466897 FAM231AP0DMU4 169 aa10.53□□□□□ -0.72
NPHP4-205ENST00000466897 FAM231CP0DMU5 169 aa10.53□□□□□ -0.72
NPHP4-205ENST00000466897 TIRAPP58753 221 aa10.53□□□□□ -0.72
NPHP4-205ENST00000466897 TMEM136Q6ZRR5 245 aa10.53□□□□□ -0.72
NPHP4-205ENST00000466897 GNB1LQ9BYB4 327 aa10.53□□□□□ -0.72
NPHP4-205ENST00000466897 NIT2Q9NQR4 276 aa10.53□□□□□ -0.72
NPHP4-205ENST00000466897 Q9UF83 564 aa10.53□□□□□ -0.72
NPHP4-205ENST00000466897 TRAV26-2A0A0B4J265 109 aa10.52□□□□□ -0.73
NPHP4-205ENST00000466897 HLA-DQA1P01909 254 aa10.52□□□□□ -0.73
NPHP4-205ENST00000466897 PPBPP02775 128 aa10.52□□□□□ -0.73
NPHP4-205ENST00000466897 MT-ND6P03923 174 aa10.52□□□□□ -0.73
NPHP4-205ENST00000466897 UBE2D3P61077 147 aa10.52□□□□□ -0.73
NPHP4-205ENST00000466897 UBE2D2P62837 147 aa10.52□□□□□ -0.73
NPHP4-205ENST00000466897 MRPL51Q4U2R6 128 aaKnown RBP10.52□□□□□ -0.73
NPHP4-205ENST00000466897 TGIF2-C20orf24A0A0A6YYL0 155 aa10.51□□□□□ -0.73
NPHP4-205ENST00000466897 TRBV6-5A0A0K0K1A5 114 aa10.51□□□□□ -0.73
NPHP4-205ENST00000466897 GAGE12JA6NER3 117 aa10.51□□□□□ -0.73
NPHP4-205ENST00000466897 GAGE1Q13065 139 aa10.51□□□□□ -0.73
NPHP4-205ENST00000466897 GAGE4Q13068 117 aa10.51□□□□□ -0.73
NPHP4-205ENST00000466897 GAGE5Q13069 117 aa10.51□□□□□ -0.73
NPHP4-205ENST00000466897 GAGE13Q4V321 117 aa10.51□□□□□ -0.73
NPHP4-205ENST00000466897 CBLN2Q8IUK8 224 aa10.51□□□□□ -0.73
NPHP4-205ENST00000466897 ATP6V0E2Q8NHE4 81 aa10.51□□□□□ -0.73
NPHP4-205ENST00000466897 ZNRF2Q8NHG8 242 aa10.51□□□□□ -0.73
NPHP4-205ENST00000466897 TNFRSF18Q9Y5U5 241 aa10.51□□□□□ -0.73
NPHP4-205ENST00000466897 PLECQ15149 4684 aaKnown RBP10.51□□□□□ -0.73
NPHP4-205ENST00000466897 LGALS9CQ6DKI2 356 aa10.5□□□□□ -0.73
NPHP4-205ENST00000466897 DAZ4Q86SG3 579 aaKnown RBP10.5□□□□□ -0.73
NPHP4-205ENST00000466897 DAZ3Q9NR90 486 aaKnown RBP10.5□□□□□ -0.73
NPHP4-205ENST00000466897 PHOX2AO14813 284 aa10.49□□□□□ -0.73
NPHP4-205ENST00000466897 CKS2P33552 79 aa10.49□□□□□ -0.73
NPHP4-205ENST00000466897 CCL18P55774 89 aa10.49□□□□□ -0.73
NPHP4-205ENST00000466897 OR10J3Q5JRS4 329 aa10.49□□□□□ -0.73
NPHP4-205ENST00000466897 LYPD5Q6UWN5 251 aa10.49□□□□□ -0.73
NPHP4-205ENST00000466897 ORMDL3Q8N138 153 aa10.49□□□□□ -0.73
NPHP4-205ENST00000466897 NRACQ8N912 160 aa10.49□□□□□ -0.73
NPHP4-205ENST00000466897 SREK1IP1Q8N9Q2 155 aaPredicted RBP10.49□□□□□ -0.73
NPHP4-205ENST00000466897 GTSF1LQ9H1H1 148 aa10.49□□□□□ -0.73
NPHP4-205ENST00000466897 LAMTOR2Q9Y2Q5 125 aa10.49□□□□□ -0.73
NPHP4-205ENST00000466897 RPS10P46783 165 aaKnown RBP10.48□□□□□ -0.73
NPHP4-205ENST00000466897 ESRGQ1W209 222 aa10.48□□□□□ -0.73
NPHP4-205ENST00000466897 RPL39LQ96EH5 51 aaKnown RBP10.48□□□□□ -0.73
NPHP4-205ENST00000466897 UPK3BQ9BT76 320 aa10.48□□□□□ -0.73
NPHP4-205ENST00000466897 D6R8Y8 96 aa10.47□□□□□ -0.73
NPHP4-205ENST00000466897 GAS8-AS1O95177 125 aa10.47□□□□□ -0.73
NPHP4-205ENST00000466897 TMEM97Q5BJF2 176 aa10.47□□□□□ -0.73
NPHP4-205ENST00000466897 C20orf78Q9BR46 151 aa10.47□□□□□ -0.73
NPHP4-205ENST00000466897 MRPS16Q9Y3D3 137 aaKnown RBP10.47□□□□□ -0.73
NPHP4-205ENST00000466897 SMKR1H3BMG3 65 aa10.46□□□□□ -0.73
NPHP4-205ENST00000466897 NCR2O95944 276 aa10.46□□□□□ -0.73
NPHP4-205ENST00000466897 APCSP02743 223 aa10.46□□□□□ -0.73
NPHP4-205ENST00000466897 RPL32P62910 135 aaKnown RBP10.46□□□□□ -0.73
NPHP4-205ENST00000466897 LINC00476Q8WZB0 136 aa10.46□□□□□ -0.73
NPHP4-205ENST00000466897 ST20Q9HBF5 79 aa10.46□□□□□ -0.73
NPHP4-205ENST00000466897 LINC00588Q9Y4M8 146 aa10.46□□□□□ -0.73
NPHP4-205ENST00000466897 TRBV27A0A0K0K1C4 114 aa10.45□□□□□ -0.74
NPHP4-205ENST00000466897 SDHAF1A6NFY7 115 aa10.45□□□□□ -0.74
NPHP4-205ENST00000466897 POLR2KP53803 58 aaKnown RBP10.45□□□□□ -0.74
NPHP4-205ENST00000466897 SUMO2P61956 95 aaKnown RBP10.45□□□□□ -0.74
NPHP4-205ENST00000466897 LELP1Q5T871 98 aa10.45□□□□□ -0.74
NPHP4-205ENST00000466897 MRPL18Q9H0U6 180 aaKnown RBP10.45□□□□□ -0.74
NPHP4-205ENST00000466897 PRSS47A8MTI9 375 aa10.44□□□□□ -0.74
NPHP4-205ENST00000466897 TNFRSF6BO95407 300 aa10.44□□□□□ -0.74
NPHP4-205ENST00000466897 PRELID3AQ96N28 172 aa10.44□□□□□ -0.74
NPHP4-205ENST00000466897 TMEM70Q9BUB7 260 aa10.44□□□□□ -0.74
NPHP4-205ENST00000466897 KMT2CQ8NEZ4 4911 aaKnown RBP10.44□□□□□ -0.74
NPHP4-205ENST00000466897 COLCA2A8K830 154 aa10.43□□□□□ -0.74
NPHP4-205ENST00000466897 NPYP01303 97 aa10.43□□□□□ -0.74
NPHP4-205ENST00000466897 UBE2DNLQ8IWF7 75 aa10.43□□□□□ -0.74
NPHP4-205ENST00000466897 TRAPPC1Q9Y5R8 145 aa10.43□□□□□ -0.74
NPHP4-205ENST00000466897 TRBV6-8A0A0A6YYG3 113 aa10.42□□□□□ -0.74
NPHP4-205ENST00000466897 I3L3M4 83 aa10.42□□□□□ -0.74
NPHP4-205ENST00000466897 VCYO14598 125 aa10.42□□□□□ -0.74
NPHP4-205ENST00000466897 SCO1O75880 301 aa10.42□□□□□ -0.74
NPHP4-205ENST00000466897 LYSTQ99698 3801 aa10.42□□□□□ -0.74
NPHP4-205ENST00000466897 ALMS1Q8TCU4 4167 aa10.41□□□□□ -0.74
NPHP4-205ENST00000466897 TRAV8-6A0A0B4J262 113 aa10.41□□□□□ -0.74
NPHP4-205ENST00000466897 IGHV3-38A0A0C4DH36 116 aa10.41□□□□□ -0.74
NPHP4-205ENST00000466897 LCE6AA0A183 80 aa10.41□□□□□ -0.74
NPHP4-205ENST00000466897 TCAPO15273 167 aa10.41□□□□□ -0.74
NPHP4-205ENST00000466897 FABP9Q0Z7S8 132 aa10.41□□□□□ -0.74
NPHP4-205ENST00000466897 COTL1Q14019 142 aa10.41□□□□□ -0.74
NPHP4-205ENST00000466897 IQCJQ1A5X6 159 aa10.41□□□□□ -0.74
NPHP4-205ENST00000466897 NTM-AS1Q6ZSK4 140 aa10.41□□□□□ -0.74
NPHP4-205ENST00000466897 SMIM2Q9BVW6 85 aa10.41□□□□□ -0.74
NPHP4-205ENST00000466897 VPS13DQ5THJ4 4388 aa10.4□□□□□ -0.74
NPHP4-205ENST00000466897 TRBV25-1A0A075B6N4 114 aa10.4□□□□□ -0.74
NPHP4-205ENST00000466897 RAB5AP20339 215 aa10.4□□□□□ -0.74
NPHP4-205ENST00000466897 KIAA1644Q3SXP7 199 aa10.4□□□□□ -0.74
NPHP4-205ENST00000466897 ALKBH7Q9BT30 221 aaPredicted RBP10.4□□□□□ -0.74
NPHP4-205ENST00000466897 MAP1LC3AQ9H492 121 aa10.4□□□□□ -0.74
NPHP4-205ENST00000466897 IGHV1-24A0A0C4DH33 117 aa10.39□□□□□ -0.75
NPHP4-205ENST00000466897 LY6G6CO95867 125 aa10.39□□□□□ -0.75
NPHP4-205ENST00000466897 PMCHP20382 165 aa10.39□□□□□ -0.75
NPHP4-205ENST00000466897 KIR2DL4Q99706 377 aa10.39□□□□□ -0.75
NPHP4-205ENST00000466897 DNAH1Q9P2D7 4330 aa10.39□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 98.6 ms