RNA–Protein interactions for RNA: ENST00000463837.5

CCDC88B-204, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 5,235 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-204ENST00000463837 PRB1P04280 392 aa14.52□□□□□ -0.09
CCDC88B-204ENST00000463837 BLCAPP62952 87 aa14.51□□□□□ -0.09
CCDC88B-204ENST00000463837 Q6ZUT4 128 aa14.51□□□□□ -0.09
CCDC88B-204ENST00000463837 C2orf16Q68DN1 1984 aa14.51□□□□□ -0.09
CCDC88B-204ENST00000463837 MRPL23Q16540 153 aaKnown RBP14.51□□□□□ -0.09
CCDC88B-204ENST00000463837 hADV29S1A0JD25 119 aa14.51□□□□□ -0.09
CCDC88B-204ENST00000463837 NEXN-AS1Q8NBZ9 246 aa14.51□□□□□ -0.09
CCDC88B-204ENST00000463837 SIRPDQ9H106 197 aa14.5□□□□□ -0.09
CCDC88B-204ENST00000463837 TRBV7-3A0A075B6L6 115 aa14.5□□□□□ -0.09
CCDC88B-204ENST00000463837 IGHG2P01859 326 aa14.5□□□□□ -0.09
CCDC88B-204ENST00000463837 Q6ZQT7 251 aa14.5□□□□□ -0.09
CCDC88B-204ENST00000463837 FSTL3O95633 263 aa14.5□□□□□ -0.09
CCDC88B-204ENST00000463837 MIAQ16674 131 aa14.5□□□□□ -0.09
CCDC88B-204ENST00000463837 C1orf229Q6ZS94 237 aaPredicted RBP14.5□□□□□ -0.09
CCDC88B-204ENST00000463837 ADORA2A-AS1P86434 159 aa14.49□□□□□ -0.09
CCDC88B-204ENST00000463837 A0A0J9YY99 117 aa14.49□□□□□ -0.09
CCDC88B-204ENST00000463837 ODF3Q96PU9 254 aa14.49□□□□□ -0.09
CCDC88B-204ENST00000463837 PKIGQ9Y2B9 76 aa14.49□□□□□ -0.09
CCDC88B-204ENST00000463837 CRYGBP07316 175 aa14.49□□□□□ -0.09
CCDC88B-204ENST00000463837 IGHV3-30-3P0DP02 117 aa14.49□□□□□ -0.09
CCDC88B-204ENST00000463837 ODF3BA8MYP8 253 aa14.49□□□□□ -0.09
CCDC88B-204ENST00000463837 LINC00643Q86TS7 51 aa14.49□□□□□ -0.09
CCDC88B-204ENST00000463837 OPRPNQ99935 248 aaPredicted RBP14.49□□□□□ -0.09
CCDC88B-204ENST00000463837 NACAE9PAV3 2078 aa14.49□□□□□ -0.09
CCDC88B-204ENST00000463837 A0A1W2PNU3 283 aaPredicted RBP14.49□□□□□ -0.09
CCDC88B-204ENST00000463837 IGHV4-38-2P0DP08 117 aa14.49□□□□□ -0.09
CCDC88B-204ENST00000463837 FBXL19-AS1Q494R0 122 aa14.48□□□□□ -0.09
CCDC88B-204ENST00000463837 SLURP1P55000 103 aa14.48□□□□□ -0.09
CCDC88B-204ENST00000463837 IGHV4-4A0A075B6R2 117 aa14.47□□□□□ -0.09
CCDC88B-204ENST00000463837 HIST2H2BCQ6DN03 193 aa14.47□□□□□ -0.09
CCDC88B-204ENST00000463837 A0A0J9YX75 114 aa14.46□□□□□ -0.09
CCDC88B-204ENST00000463837 DEFB105AQ8NG35 78 aa14.46□□□□□ -0.09
CCDC88B-204ENST00000463837 ZFP36P26651 326 aaKnown RBP14.45□□□□□ -0.1
CCDC88B-204ENST00000463837 CXCL5P42830 114 aa14.45□□□□□ -0.1
CCDC88B-204ENST00000463837 RNF183Q96D59 192 aa14.45□□□□□ -0.1
CCDC88B-204ENST00000463837 SPG11Q96JI7 2443 aa14.45□□□□□ -0.1
CCDC88B-204ENST00000463837 CCDC140Q96MF4 163 aa14.45□□□□□ -0.1
CCDC88B-204ENST00000463837 A0A0J9YXY3 114 aa14.44□□□□□ -0.1
CCDC88B-204ENST00000463837 CUL9Q8IWT3 2517 aa14.44□□□□□ -0.1
CCDC88B-204ENST00000463837 COX7A2LO14548 114 aa14.44□□□□□ -0.1
CCDC88B-204ENST00000463837 MT-ATP8P03928 68 aa14.44□□□□□ -0.1
CCDC88B-204ENST00000463837 LECT2O14960 151 aa14.44□□□□□ -0.1
CCDC88B-204ENST00000463837 NFE4Q86UQ8 179 aa14.44□□□□□ -0.1
CCDC88B-204ENST00000463837 PSMB8P28062 276 aa14.43□□□□□ -0.1
CCDC88B-204ENST00000463837 CACNA1AO00555 2505 aa14.43□□□□□ -0.1
CCDC88B-204ENST00000463837 IGLV10-54A0A075B6I4 117 aa14.43□□□□□ -0.1
CCDC88B-204ENST00000463837 TRBV10-1A0A0K0K1A3 114 aa14.43□□□□□ -0.1
CCDC88B-204ENST00000463837 WISP2O76076 250 aa14.43□□□□□ -0.1
CCDC88B-204ENST00000463837 SPART-AS1P0CW21 52 aa14.43□□□□□ -0.1
CCDC88B-204ENST00000463837 IGHV4OR15-8A0A075B7B6 117 aa14.42□□□□□ -0.1
CCDC88B-204ENST00000463837 A0A087WW49 117 aa14.42□□□□□ -0.1
CCDC88B-204ENST00000463837 CRIP1P50238 77 aa14.42□□□□□ -0.1
CCDC88B-204ENST00000463837 NUP210LQ5VU65 1888 aa14.42□□□□□ -0.1
CCDC88B-204ENST00000463837 HIVEP2P31629 2446 aa14.42□□□□□ -0.1
CCDC88B-204ENST00000463837 IGKV2D-24A0A075B6R9 120 aa14.42□□□□□ -0.1
CCDC88B-204ENST00000463837 NDUFV3P56181 108 aaKnown RBP14.42□□□□□ -0.1
CCDC88B-204ENST00000463837 UNQ9165/PRO28630Q6UXU0 137 aa14.42□□□□□ -0.1
CCDC88B-204ENST00000463837 C2orf91Q6ZV80 131 aa14.42□□□□□ -0.1
CCDC88B-204ENST00000463837 RNF185Q96GF1 192 aa14.42□□□□□ -0.1
CCDC88B-204ENST00000463837 IGLV2-11P01706 119 aa14.41□□□□□ -0.1
CCDC88B-204ENST00000463837 TMEM61Q8N0U2 210 aa14.41□□□□□ -0.1
CCDC88B-204ENST00000463837 DSCAML1Q8TD84 2053 aa14.41□□□□□ -0.1
CCDC88B-204ENST00000463837 P0DMU3 169 aa14.41□□□□□ -0.1
CCDC88B-204ENST00000463837 FAM231AP0DMU4 169 aa14.41□□□□□ -0.1
CCDC88B-204ENST00000463837 FAM231CP0DMU5 169 aa14.41□□□□□ -0.1
CCDC88B-204ENST00000463837 C1orf43Q9BWL3 253 aa14.41□□□□□ -0.1
CCDC88B-204ENST00000463837 FUSP35637 526 aaKnown RBP eCLIP14.4□□□□□ -0.1
CCDC88B-204ENST00000463837 GYPEP15421 78 aa14.4□□□□□ -0.1
CCDC88B-204ENST00000463837 CCL18P55774 89 aa14.4□□□□□ -0.1
CCDC88B-204ENST00000463837 MUC22E2RYF6 1773 aaPredicted RBP14.4□□□□□ -0.1
CCDC88B-204ENST00000463837 IGKV2D-26A0A0A0MRZ7 120 aa14.39□□□□□ -0.11
CCDC88B-204ENST00000463837 CEMP1Q6PRD7 247 aaPredicted RBP14.39□□□□□ -0.11
CCDC88B-204ENST00000463837 TNCP24821 2201 aa14.39□□□□□ -0.11
CCDC88B-204ENST00000463837 A6NDX4 124 aa14.39□□□□□ -0.11
CCDC88B-204ENST00000463837 TMEM256-PLSCR3K7ERE1 68 aa14.39□□□□□ -0.11
CCDC88B-204ENST00000463837 PDE6GP18545 87 aa14.38□□□□□ -0.11
CCDC88B-204ENST00000463837 TMEM223A0PJW6 202 aa14.38□□□□□ -0.11
CCDC88B-204ENST00000463837 MIR7-3HGQ8N6C7 128 aa14.38□□□□□ -0.11
CCDC88B-204ENST00000463837 MAPKAPK5-AS1Q8N8E1 139 aa14.38□□□□□ -0.11
CCDC88B-204ENST00000463837 EBI3Q14213 229 aa14.38□□□□□ -0.11
CCDC88B-204ENST00000463837 Q9HAA7 133 aa14.38□□□□□ -0.11
CCDC88B-204ENST00000463837 TRBV12-3P01733 135 aa14.37□□□□□ -0.11
CCDC88B-204ENST00000463837 IGHV4-28A0A0C4DH34 117 aa14.37□□□□□ -0.11
CCDC88B-204ENST00000463837 LY6LH3BQJ8 138 aa14.37□□□□□ -0.11
CCDC88B-204ENST00000463837 UBE2BP63146 152 aa14.37□□□□□ -0.11
CCDC88B-204ENST00000463837 HIST2H2BDQ6DRA6 164 aa14.37□□□□□ -0.11
CCDC88B-204ENST00000463837 TRBV30A0A0K0K1B3 111 aa14.36□□□□□ -0.11
CCDC88B-204ENST00000463837 CLPSL1A2RUU4 121 aa14.36□□□□□ -0.11
CCDC88B-204ENST00000463837 TEX49A0A1B0GTD5 131 aa14.36□□□□□ -0.11
CCDC88B-204ENST00000463837 TECTAO75443 2155 aa14.35□□□□□ -0.11
CCDC88B-204ENST00000463837 ZFAND3Q9H8U3 227 aa14.35□□□□□ -0.11
CCDC88B-204ENST00000463837 IGF1P05019 195 aa14.35□□□□□ -0.11
CCDC88B-204ENST00000463837 C4orf3Q8WVX3 66 aa14.35□□□□□ -0.11
CCDC88B-204ENST00000463837 NRGNQ92686 78 aa14.35□□□□□ -0.11
CCDC88B-204ENST00000463837 ZNF22P17026 224 aaPredicted RBP14.34□□□□□ -0.11
CCDC88B-204ENST00000463837 LINC00310P59036 64 aa14.34□□□□□ -0.11
CCDC88B-204ENST00000463837 ANKHD1Q8IWZ3 2542 aaKnown RBP14.34□□□□□ -0.11
CCDC88B-204ENST00000463837 PLXNB1O43157 2135 aa14.34□□□□□ -0.11
CCDC88B-204ENST00000463837 NCR3O14931 201 aa14.34□□□□□ -0.11
CCDC88B-204ENST00000463837 UQCRQO14949 82 aa14.34□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 68.2 ms