RNA–Protein interactions for RNA: ENST00000463066.1

HLA-DPA1-245, Transcript of major histocompatibility complex, class II, DP alpha 1, humanhuman

Gene HLA-DPA1, Length 580 nt, Biotype processed transcript, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DPA1-245ENST00000463066 IGHV3-30P01768 117 aa11.3□□□□□ -0.6
HLA-DPA1-245ENST00000463066 IGHV3-33P01772 117 aa11.3□□□□□ -0.6
HLA-DPA1-245ENST00000463066 DNAH10OSP0CZ25 163 aa11.3□□□□□ -0.6
HLA-DPA1-245ENST00000463066 IGHV3-30-3P0DP02 117 aa11.3□□□□□ -0.6
HLA-DPA1-245ENST00000463066 IGHV3-30-5P0DP03 117 aa11.3□□□□□ -0.6
HLA-DPA1-245ENST00000463066 TTC32Q5I0X7 151 aa11.3□□□□□ -0.6
HLA-DPA1-245ENST00000463066 C6orf223Q8N319 242 aa11.3□□□□□ -0.6
HLA-DPA1-245ENST00000463066 FAT2Q9NYQ8 4349 aa11.29□□□□□ -0.6
HLA-DPA1-245ENST00000463066 TRAV8-6A0A0B4J262 113 aa11.29□□□□□ -0.6
HLA-DPA1-245ENST00000463066 SMIM27A0A1W2PRY6 76 aa11.29□□□□□ -0.6
HLA-DPA1-245ENST00000463066 TMEM218A2RU14 115 aa11.29□□□□□ -0.6
HLA-DPA1-245ENST00000463066 GATD1Q8NB37 220 aa11.29□□□□□ -0.6
HLA-DPA1-245ENST00000463066 DEFB104AQ8WTQ1 72 aa11.29□□□□□ -0.6
HLA-DPA1-245ENST00000463066 BORCS7Q96B45 105 aa11.29□□□□□ -0.6
HLA-DPA1-245ENST00000463066 LINC00862A6NCI5 91 aa11.28□□□□□ -0.6
HLA-DPA1-245ENST00000463066 GAS8-AS1O95177 125 aa11.28□□□□□ -0.6
HLA-DPA1-245ENST00000463066 RASL11AQ6T310 242 aa11.28□□□□□ -0.6
HLA-DPA1-245ENST00000463066 UQCC3Q6UW78 93 aa11.28□□□□□ -0.6
HLA-DPA1-245ENST00000463066 NAT8BQ9UHF3 227 aa11.28□□□□□ -0.6
HLA-DPA1-245ENST00000463066 FRAS1Q86XX4 4008 aa11.28□□□□□ -0.6
HLA-DPA1-245ENST00000463066 PRSS29PA6NIE9 313 aa11.27□□□□□ -0.61
HLA-DPA1-245ENST00000463066 RPL39LQ96EH5 51 aaKnown RBP11.27□□□□□ -0.61
HLA-DPA1-245ENST00000463066 RNF185Q96GF1 192 aa11.27□□□□□ -0.61
HLA-DPA1-245ENST00000463066 H7C1H1 209 aa11.26□□□□□ -0.61
HLA-DPA1-245ENST00000463066 TNP2Q05952 138 aa11.26□□□□□ -0.61
HLA-DPA1-245ENST00000463066 RIGQ13278 110 aa11.26□□□□□ -0.61
HLA-DPA1-245ENST00000463066 LINC01556Q5JQF7 62 aa11.26□□□□□ -0.61
HLA-DPA1-245ENST00000463066 NTM-AS1Q6ZSK4 140 aa11.26□□□□□ -0.61
HLA-DPA1-245ENST00000463066 SMIM15Q7Z3B0 74 aa11.26□□□□□ -0.61
HLA-DPA1-245ENST00000463066 BIRC6Q9NR09 4857 aa11.25□□□□□ -0.61
HLA-DPA1-245ENST00000463066 A0A087WWC5 75 aa11.25□□□□□ -0.61
HLA-DPA1-245ENST00000463066 F8W036 122 aa11.25□□□□□ -0.61
HLA-DPA1-245ENST00000463066 PNRC1Q12796 327 aaPredicted RBP11.25□□□□□ -0.61
HLA-DPA1-245ENST00000463066 MRPL54Q6P161 138 aaKnown RBP11.25□□□□□ -0.61
HLA-DPA1-245ENST00000463066 LINC00336Q6ZUF6 198 aa11.25□□□□□ -0.61
HLA-DPA1-245ENST00000463066 AMN1Q8IY45 258 aa11.25□□□□□ -0.61
HLA-DPA1-245ENST00000463066 DNAJC30Q96LL9 226 aa11.25□□□□□ -0.61
HLA-DPA1-245ENST00000463066 TMEM191AQ9H0A3 160 aa11.25□□□□□ -0.61
HLA-DPA1-245ENST00000463066 NIT2Q9NQR4 276 aa11.25□□□□□ -0.61
HLA-DPA1-245ENST00000463066 CAMPP49913 170 aa11.24□□□□□ -0.61
HLA-DPA1-245ENST00000463066 Q6ZRN7 208 aaPredicted RBP11.24□□□□□ -0.61
HLA-DPA1-245ENST00000463066 TRBV6-8A0A0A6YYG3 113 aa11.23□□□□□ -0.61
HLA-DPA1-245ENST00000463066 A0A1B0GVY2 172 aa11.23□□□□□ -0.61
HLA-DPA1-245ENST00000463066 SMKR1H3BMG3 65 aa11.23□□□□□ -0.61
HLA-DPA1-245ENST00000463066 RAB4AP20338 218 aa11.23□□□□□ -0.61
HLA-DPA1-245ENST00000463066 DAZ4Q86SG3 579 aaKnown RBP11.23□□□□□ -0.61
HLA-DPA1-245ENST00000463066 NIT1Q86X76 327 aa11.23□□□□□ -0.61
HLA-DPA1-245ENST00000463066 DAZ3Q9NR90 486 aaKnown RBP11.23□□□□□ -0.61
HLA-DPA1-245ENST00000463066 TRAV9-2A0A087WT02 112 aa11.22□□□□□ -0.61
HLA-DPA1-245ENST00000463066 PPP1R2P9O14990 202 aa11.22□□□□□ -0.61
HLA-DPA1-245ENST00000463066 NCR2O95944 276 aa11.22□□□□□ -0.61
HLA-DPA1-245ENST00000463066 MT-ND4LP03901 98 aa11.22□□□□□ -0.61
HLA-DPA1-245ENST00000463066 A0A1B0GXF2 115 aa11.21□□□□□ -0.61
HLA-DPA1-245ENST00000463066 RPS10P46783 165 aaKnown RBP11.21□□□□□ -0.61
HLA-DPA1-245ENST00000463066 Q9HAA7 133 aa11.21□□□□□ -0.61
HLA-DPA1-245ENST00000463066 IBA57-AS1B1ANH7 110 aa11.2□□□□□ -0.62
HLA-DPA1-245ENST00000463066 ANAPC16Q96DE5 110 aa11.2□□□□□ -0.62
HLA-DPA1-245ENST00000463066 CHCHD5Q9BSY4 110 aa11.2□□□□□ -0.62
HLA-DPA1-245ENST00000463066 SEC11CQ9BY50 192 aa11.2□□□□□ -0.62
HLA-DPA1-245ENST00000463066 GAGE6Q13070 117 aa11.19□□□□□ -0.62
HLA-DPA1-245ENST00000463066 C10orf126Q8N4M7 172 aa11.19□□□□□ -0.62
HLA-DPA1-245ENST00000463066 DNAH11Q96DT5 4516 aa11.19□□□□□ -0.62
HLA-DPA1-245ENST00000463066 TMEM262E9PQX1 116 aa11.18□□□□□ -0.62
HLA-DPA1-245ENST00000463066 HBBP68871 147 aa11.18□□□□□ -0.62
HLA-DPA1-245ENST00000463066 MRPL51Q4U2R6 128 aaKnown RBP11.18□□□□□ -0.62
HLA-DPA1-245ENST00000463066 MPV17L2Q567V2 206 aa11.18□□□□□ -0.62
HLA-DPA1-245ENST00000463066 FAM104BQ5XKR9 115 aa11.18□□□□□ -0.62
HLA-DPA1-245ENST00000463066 SREK1IP1Q8N9Q2 155 aaPredicted RBP11.18□□□□□ -0.62
HLA-DPA1-245ENST00000463066 IGHV1-24A0A0C4DH33 117 aa11.17□□□□□ -0.62
HLA-DPA1-245ENST00000463066 SDHAF1A6NFY7 115 aa11.17□□□□□ -0.62
HLA-DPA1-245ENST00000463066 BTF3P20290 206 aaKnown RBP11.17□□□□□ -0.62
HLA-DPA1-245ENST00000463066 IQCJQ1A5X6 159 aa11.17□□□□□ -0.62
HLA-DPA1-245ENST00000463066 C10orf91Q5T1B1 145 aa11.17□□□□□ -0.62
HLA-DPA1-245ENST00000463066 Q8N976 141 aa11.17□□□□□ -0.62
HLA-DPA1-245ENST00000463066 FRZBQ92765 325 aa11.17□□□□□ -0.62
HLA-DPA1-245ENST00000463066 MRAP2Q96G30 205 aa11.17□□□□□ -0.62
HLA-DPA1-245ENST00000463066 KLK12Q9UKR0 248 aa11.17□□□□□ -0.62
HLA-DPA1-245ENST00000463066 HECTD4Q9Y4D8 3996 aa11.16□□□□□ -0.62
HLA-DPA1-245ENST00000463066 TRBV25-1A0A075B6N4 114 aa11.16□□□□□ -0.62
HLA-DPA1-245ENST00000463066 A0A087WX48 190 aa11.16□□□□□ -0.62
HLA-DPA1-245ENST00000463066 TRBV6-5A0A0K0K1A5 114 aa11.16□□□□□ -0.62
HLA-DPA1-245ENST00000463066 A0A1B0GW15 77 aa11.16□□□□□ -0.62
HLA-DPA1-245ENST00000463066 K7EP13 123 aa11.16□□□□□ -0.62
HLA-DPA1-245ENST00000463066 TMEM97Q5BJF2 176 aa11.16□□□□□ -0.62
HLA-DPA1-245ENST00000463066 ATRAIDQ6UW56 229 aa11.16□□□□□ -0.62
HLA-DPA1-245ENST00000463066 NRACQ8N912 160 aa11.16□□□□□ -0.62
HLA-DPA1-245ENST00000463066 URGCP-MRPS24S4R325 110 aa11.16□□□□□ -0.62
HLA-DPA1-245ENST00000463066 DYNC1H1Q14204 4646 aaKnown RBP11.16□□□□□ -0.62
HLA-DPA1-245ENST00000463066 COTL1Q14019 142 aa11.15□□□□□ -0.62
HLA-DPA1-245ENST00000463066 KCNIP4Q6PIL6 250 aa11.15□□□□□ -0.62
HLA-DPA1-245ENST00000463066 ST20Q9HBF5 79 aa11.15□□□□□ -0.62
HLA-DPA1-245ENST00000463066 CARHSP1Q9Y2V2 147 aaKnown RBP11.15□□□□□ -0.62
HLA-DPA1-245ENST00000463066 PKD1P98161 4303 aa11.15□□□□□ -0.62
HLA-DPA1-245ENST00000463066 AMTP48728 403 aa11.14□□□□□ -0.63
HLA-DPA1-245ENST00000463066 RBX1P62877 108 aa11.14□□□□□ -0.63
HLA-DPA1-245ENST00000463066 NFE4Q86UQ8 179 aa11.14□□□□□ -0.63
HLA-DPA1-245ENST00000463066 TMEM243Q9BU79 118 aa11.14□□□□□ -0.63
HLA-DPA1-245ENST00000463066 TMEM70Q9BUB7 260 aa11.14□□□□□ -0.63
HLA-DPA1-245ENST00000463066 TMEM242Q9NWH2 141 aa11.14□□□□□ -0.63
HLA-DPA1-245ENST00000463066 C7orf77A4D0Y5 90 aa11.13□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 57.4 ms