RNA–Protein interactions for RNA: ENST00000461819.5

CCDC28B-203, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 5

Gene CCDC28B, Length 780 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-203ENST00000461819 SREK1IP1Q8N9Q2 155 aaPredicted RBP15.59■□□□□ 0.09
CCDC28B-203ENST00000461819 NUP35Q8NFH5 326 aa15.59■□□□□ 0.09
CCDC28B-203ENST00000461819 M0QY20 66 aa15.58■□□□□ 0.08
CCDC28B-203ENST00000461819 TNFRSF18Q9Y5U5 241 aa15.58■□□□□ 0.08
CCDC28B-203ENST00000461819 TRAV9-2A0A087WT02 112 aa15.57■□□□□ 0.08
CCDC28B-203ENST00000461819 IGHV3-38A0A0C4DH36 116 aa15.57■□□□□ 0.08
CCDC28B-203ENST00000461819 SMIM27A0A1W2PRY6 76 aa15.57■□□□□ 0.08
CCDC28B-203ENST00000461819 DNAH10OSP0CZ25 163 aa15.57■□□□□ 0.08
CCDC28B-203ENST00000461819 RIGQ13278 110 aa15.57■□□□□ 0.08
CCDC28B-203ENST00000461819 RASL11AQ6T310 242 aa15.57■□□□□ 0.08
CCDC28B-203ENST00000461819 C6orf223Q8N319 242 aa15.57■□□□□ 0.08
CCDC28B-203ENST00000461819 PPP1R2P9O14990 202 aa15.56■□□□□ 0.08
CCDC28B-203ENST00000461819 DNAJC30Q96LL9 226 aa15.56■□□□□ 0.08
CCDC28B-203ENST00000461819 TMEM218A2RU14 115 aa15.55■□□□□ 0.08
CCDC28B-203ENST00000461819 F8W036 122 aa15.55■□□□□ 0.08
CCDC28B-203ENST00000461819 RTL8CO15255 209 aa15.55■□□□□ 0.08
CCDC28B-203ENST00000461819 LINC00336Q6ZUF6 198 aa15.55■□□□□ 0.08
CCDC28B-203ENST00000461819 TRAV26-2A0A0B4J265 109 aa15.53■□□□□ 0.08
CCDC28B-203ENST00000461819 LINC00862A6NCI5 91 aa15.53■□□□□ 0.08
CCDC28B-203ENST00000461819 MT-ND4LP03901 98 aa15.53■□□□□ 0.08
CCDC28B-203ENST00000461819 ADCYAP1P18509 176 aa15.53■□□□□ 0.08
CCDC28B-203ENST00000461819 LINC01556Q5JQF7 62 aa15.53■□□□□ 0.08
CCDC28B-203ENST00000461819 DAZ4Q86SG3 579 aaKnown RBP15.53■□□□□ 0.08
CCDC28B-203ENST00000461819 NIT2Q9NQR4 276 aa15.53■□□□□ 0.08
CCDC28B-203ENST00000461819 DAZ3Q9NR90 486 aaKnown RBP15.53■□□□□ 0.08
CCDC28B-203ENST00000461819 K7EP13 123 aa15.52■□□□□ 0.08
CCDC28B-203ENST00000461819 IGHV3-30P01768 117 aa15.52■□□□□ 0.08
CCDC28B-203ENST00000461819 IGHV3-33P01772 117 aa15.52■□□□□ 0.08
CCDC28B-203ENST00000461819 IGHV3-30-3P0DP02 117 aa15.52■□□□□ 0.08
CCDC28B-203ENST00000461819 IGHV3-30-5P0DP03 117 aa15.52■□□□□ 0.08
CCDC28B-203ENST00000461819 C10orf126Q8N4M7 172 aa15.52■□□□□ 0.08
CCDC28B-203ENST00000461819 GATD1Q8NB37 220 aa15.52■□□□□ 0.08
CCDC28B-203ENST00000461819 TMEM191AQ9H0A3 160 aa15.52■□□□□ 0.08
CCDC28B-203ENST00000461819 ANAPC16Q96DE5 110 aa15.51■□□□□ 0.07
CCDC28B-203ENST00000461819 PRSS29PA6NIE9 313 aa15.5■□□□□ 0.07
CCDC28B-203ENST00000461819 BTF3P20290 206 aaKnown RBP15.5■□□□□ 0.07
CCDC28B-203ENST00000461819 TMEM97Q5BJF2 176 aa15.5■□□□□ 0.07
CCDC28B-203ENST00000461819 DNAH17Q9UFH2 4485 aa15.5■□□□□ 0.07
CCDC28B-203ENST00000461819 TRBV6-8A0A0A6YYG3 113 aa15.49■□□□□ 0.07
CCDC28B-203ENST00000461819 FRZBQ92765 325 aa15.49■□□□□ 0.07
CCDC28B-203ENST00000461819 SEC11CQ9BY50 192 aa15.49■□□□□ 0.07
CCDC28B-203ENST00000461819 URGCP-MRPS24S4R325 110 aa15.49■□□□□ 0.07
CCDC28B-203ENST00000461819 EPPK1P58107 5090 aaKnown RBP15.49■□□□□ 0.07
CCDC28B-203ENST00000461819 A0A1B0GW15 77 aa15.48■□□□□ 0.07
CCDC28B-203ENST00000461819 CAMPP49913 170 aa15.48■□□□□ 0.07
CCDC28B-203ENST00000461819 MRPL54Q6P161 138 aaKnown RBP15.48■□□□□ 0.07
CCDC28B-203ENST00000461819 AMN1Q8IY45 258 aa15.48■□□□□ 0.07
CCDC28B-203ENST00000461819 RPL39LQ96EH5 51 aaKnown RBP15.48■□□□□ 0.07
CCDC28B-203ENST00000461819 FAT2Q9NYQ8 4349 aa15.48■□□□□ 0.07
CCDC28B-203ENST00000461819 KCNIP4Q6PIL6 250 aa15.47■□□□□ 0.07
CCDC28B-203ENST00000461819 S100A8P05109 93 aa15.46■□□□□ 0.07
CCDC28B-203ENST00000461819 Q8N3U1 123 aa15.46■□□□□ 0.07
CCDC28B-203ENST00000461819 TRBV25-1A0A075B6N4 114 aa15.45■□□□□ 0.06
CCDC28B-203ENST00000461819 RAB4AP20338 218 aa15.45■□□□□ 0.06
CCDC28B-203ENST00000461819 HBBP68871 147 aa15.45■□□□□ 0.06
CCDC28B-203ENST00000461819 NIT1Q86X76 327 aa15.45■□□□□ 0.06
CCDC28B-203ENST00000461819 MRAP2Q96G30 205 aa15.45■□□□□ 0.06
CCDC28B-203ENST00000461819 RNF185Q96GF1 192 aa15.45■□□□□ 0.06
CCDC28B-203ENST00000461819 CHCHD5Q9BSY4 110 aa15.45■□□□□ 0.06
CCDC28B-203ENST00000461819 A0A087WX48 190 aa15.44■□□□□ 0.06
CCDC28B-203ENST00000461819 NTM-AS1Q6ZSK4 140 aa15.44■□□□□ 0.06
CCDC28B-203ENST00000461819 NFE4Q86UQ8 179 aa15.44■□□□□ 0.06
CCDC28B-203ENST00000461819 TMEM262E9PQX1 116 aa15.43■□□□□ 0.06
CCDC28B-203ENST00000461819 IGHV1-24A0A0C4DH33 117 aa15.42■□□□□ 0.06
CCDC28B-203ENST00000461819 IBA57-AS1B1ANH7 110 aa15.42■□□□□ 0.06
CCDC28B-203ENST00000461819 COTL1Q14019 142 aa15.42■□□□□ 0.06
CCDC28B-203ENST00000461819 ATP5L2Q7Z4Y8 100 aa15.42■□□□□ 0.06
CCDC28B-203ENST00000461819 HECTD4Q9Y4D8 3996 aa15.42■□□□□ 0.06
CCDC28B-203ENST00000461819 A0A1B0GXF2 115 aa15.41■□□□□ 0.06
CCDC28B-203ENST00000461819 PKIAP61925 76 aa15.41■□□□□ 0.06
CCDC28B-203ENST00000461819 TNP2Q05952 138 aa15.41■□□□□ 0.06
CCDC28B-203ENST00000461819 FAM104BQ5XKR9 115 aa15.41■□□□□ 0.06
CCDC28B-203ENST00000461819 DEFB104AQ8WTQ1 72 aa15.41■□□□□ 0.06
CCDC28B-203ENST00000461819 CHCHD7Q9BUK0 85 aa15.41■□□□□ 0.06
CCDC28B-203ENST00000461819 Q9HAA7 133 aa15.41■□□□□ 0.06
CCDC28B-203ENST00000461819 SDHAF1A6NFY7 115 aa15.4■□□□□ 0.06
CCDC28B-203ENST00000461819 GAS8-AS1O95177 125 aa15.4■□□□□ 0.06
CCDC28B-203ENST00000461819 NCR2O95944 276 aa15.4■□□□□ 0.06
CCDC28B-203ENST00000461819 LAGE3Q14657 143 aa15.4■□□□□ 0.06
CCDC28B-203ENST00000461819 IQCJQ1A5X6 159 aa15.4■□□□□ 0.06
CCDC28B-203ENST00000461819 CTDSP1Q9GZU7 261 aa15.4■□□□□ 0.06
CCDC28B-203ENST00000461819 ST20Q9HBF5 79 aa15.4■□□□□ 0.06
CCDC28B-203ENST00000461819 TRBV6-5A0A0K0K1A5 114 aa15.39■□□□□ 0.05
CCDC28B-203ENST00000461819 SMKR1H3BMG3 65 aa15.39■□□□□ 0.05
CCDC28B-203ENST00000461819 C10orf91Q5T1B1 145 aa15.39■□□□□ 0.05
CCDC28B-203ENST00000461819 CARHSP1Q9Y2V2 147 aaKnown RBP15.39■□□□□ 0.05
CCDC28B-203ENST00000461819 RPS10P46783 165 aaKnown RBP15.38■□□□□ 0.05
CCDC28B-203ENST00000461819 AMTP48728 403 aa15.38■□□□□ 0.05
CCDC28B-203ENST00000461819 MRPL51Q4U2R6 128 aaKnown RBP15.38■□□□□ 0.05
CCDC28B-203ENST00000461819 Q6ZRN7 208 aaPredicted RBP15.38■□□□□ 0.05
CCDC28B-203ENST00000461819 BTF3L4Q96K17 158 aa15.38■□□□□ 0.05
CCDC28B-203ENST00000461819 TMEM243Q9BU79 118 aa15.38■□□□□ 0.05
CCDC28B-203ENST00000461819 PPP1R17O96001 155 aa15.37■□□□□ 0.05
CCDC28B-203ENST00000461819 GAGE6Q13070 117 aa15.37■□□□□ 0.05
CCDC28B-203ENST00000461819 ELOBQ15370 118 aa15.37■□□□□ 0.05
CCDC28B-203ENST00000461819 MPV17L2Q567V2 206 aa15.37■□□□□ 0.05
CCDC28B-203ENST00000461819 KLK12Q9UKR0 248 aa15.37■□□□□ 0.05
CCDC28B-203ENST00000461819 PMCHP20382 165 aa15.36■□□□□ 0.05
CCDC28B-203ENST00000461819 IMMP2LQ96T52 175 aa15.36■□□□□ 0.05
CCDC28B-203ENST00000461819 TRAV8-3A0A0A6YYJ7 113 aa15.35■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 76.7 ms