RNA–Protein interactions for RNA: ENST00000444458.5

CCDC88A-208, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 4,236 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-208ENST00000444458 NCKAP5O14513 1909 aa1.43□□□□□ -2.18
CCDC88A-208ENST00000444458 KIAA2026Q5HYC2 2103 aa1.42□□□□□ -2.18
CCDC88A-208ENST00000444458 IGLV10-54A0A075B6I4 117 aa1.42□□□□□ -2.18
CCDC88A-208ENST00000444458 PRB1P04280 392 aa1.42□□□□□ -2.18
CCDC88A-208ENST00000444458 CCL4P13236 92 aa1.42□□□□□ -2.18
CCDC88A-208ENST00000444458 DSCR4P56555 118 aaPredicted RBP1.42□□□□□ -2.18
CCDC88A-208ENST00000444458 ROMO1P60602 79 aa1.42□□□□□ -2.18
CCDC88A-208ENST00000444458 ZNF791Q3KP31 576 aaPredicted RBP1.42□□□□□ -2.18
CCDC88A-208ENST00000444458 IGFL3Q6UXB1 125 aa1.42□□□□□ -2.18
CCDC88A-208ENST00000444458 C9orf62Q8N4C0 152 aa1.42□□□□□ -2.18
CCDC88A-208ENST00000444458 TOGARAM1Q9Y4F4 1720 aa1.42□□□□□ -2.18
CCDC88A-208ENST00000444458 PRKDCP78527 4128 aaKnown RBP1.42□□□□□ -2.18
CCDC88A-208ENST00000444458 SPINK14Q6IE38 97 aa1.42□□□□□ -2.18
CCDC88A-208ENST00000444458 TMEM106BQ9NUM4 274 aa1.42□□□□□ -2.18
CCDC88A-208ENST00000444458 NUP98P52948 1817 aa1.42□□□□□ -2.18
CCDC88A-208ENST00000444458 CXCL8P10145 99 aa1.42□□□□□ -2.18
CCDC88A-208ENST00000444458 C20orf166-AS1Q96NR2 134 aa1.42□□□□□ -2.18
CCDC88A-208ENST00000444458 PCSK5Q92824 1860 aa1.42□□□□□ -2.18
CCDC88A-208ENST00000444458 SCN3AQ9NY46 2000 aa1.42□□□□□ -2.18
CCDC88A-208ENST00000444458 E7EUB6 86 aa1.42□□□□□ -2.18
CCDC88A-208ENST00000444458 GNGT2O14610 69 aa1.42□□□□□ -2.18
CCDC88A-208ENST00000444458 ADCYAP1P18509 176 aa1.42□□□□□ -2.18
CCDC88A-208ENST00000444458 DCDP81605 110 aaKnown RBP1.42□□□□□ -2.18
CCDC88A-208ENST00000444458 RBM3P98179 157 aaKnown RBP1.42□□□□□ -2.18
CCDC88A-208ENST00000444458 ELOBQ15370 118 aa1.42□□□□□ -2.18
CCDC88A-208ENST00000444458 BET1LQ9NYM9 111 aa1.42□□□□□ -2.18
CCDC88A-208ENST00000444458 PRR14LQ5THK1 2151 aa1.42□□□□□ -2.18
CCDC88A-208ENST00000444458 GREB1Q4ZG55 1949 aa1.42□□□□□ -2.18
CCDC88A-208ENST00000444458 MUC21A0A0G2JKD1 596 aa1.41□□□□□ -2.18
CCDC88A-208ENST00000444458 F8W1H4 67 aa1.41□□□□□ -2.18
CCDC88A-208ENST00000444458 IGLV1-51P01701 117 aa1.41□□□□□ -2.18
CCDC88A-208ENST00000444458 IL7P13232 177 aa1.41□□□□□ -2.18
CCDC88A-208ENST00000444458 IQCJQ1A5X6 159 aa1.41□□□□□ -2.18
CCDC88A-208ENST00000444458 SH2D6Q7Z4S9 175 aa1.41□□□□□ -2.18
CCDC88A-208ENST00000444458 SPTSSBQ8NFR3 76 aa1.41□□□□□ -2.18
CCDC88A-208ENST00000444458 LSM10Q969L4 123 aaKnown RBP1.41□□□□□ -2.18
CCDC88A-208ENST00000444458 TANC2Q9HCD6 1990 aa1.41□□□□□ -2.18
CCDC88A-208ENST00000444458 TRPM6Q9BX84 2022 aa1.41□□□□□ -2.18
CCDC88A-208ENST00000444458 ASH1LQ9NR48 2969 aaKnown RBP1.41□□□□□ -2.18
CCDC88A-208ENST00000444458 B4DSR2 109 aa1.41□□□□□ -2.18
CCDC88A-208ENST00000444458 GAS8-AS1O95177 125 aa1.41□□□□□ -2.18
CCDC88A-208ENST00000444458 MT3P25713 68 aa1.41□□□□□ -2.18
CCDC88A-208ENST00000444458 ATP5EP56381 51 aaPredicted RBP1.41□□□□□ -2.18
CCDC88A-208ENST00000444458 UBE2L3P68036 154 aaKnown RBP1.41□□□□□ -2.18
CCDC88A-208ENST00000444458 DEFB113Q30KQ7 82 aa1.41□□□□□ -2.18
CCDC88A-208ENST00000444458 DSCR8Q96T75 97 aa1.41□□□□□ -2.18
CCDC88A-208ENST00000444458 A0A0G2JMZ2 1700 aa1.41□□□□□ -2.18
CCDC88A-208ENST00000444458 LCTP09848 1927 aa1.41□□□□□ -2.18
CCDC88A-208ENST00000444458 Q6ZS92 163 aa1.41□□□□□ -2.18
CCDC88A-208ENST00000444458 Q8N2B8 174 aa1.41□□□□□ -2.18
CCDC88A-208ENST00000444458 FAM19A2Q8N3H0 131 aa1.41□□□□□ -2.18
CCDC88A-208ENST00000444458 MYOZ3Q8TDC0 251 aa1.41□□□□□ -2.18
CCDC88A-208ENST00000444458 BRWD1Q9NSI6 2320 aa1.41□□□□□ -2.18
CCDC88A-208ENST00000444458 UBE2L5PA0A1B0GUS4 154 aa1.4□□□□□ -2.18
CCDC88A-208ENST00000444458 IGLV6-57P01721 117 aa1.4□□□□□ -2.18
CCDC88A-208ENST00000444458 HRES1P13985 223 aa1.4□□□□□ -2.18
CCDC88A-208ENST00000444458 MIFP14174 115 aa1.4□□□□□ -2.18
CCDC88A-208ENST00000444458 FOXI2Q6ZQN5 318 aa1.4□□□□□ -2.18
CCDC88A-208ENST00000444458 Q6ZTI0 123 aa1.4□□□□□ -2.18
CCDC88A-208ENST00000444458 C4orf3Q8WVX3 66 aa1.4□□□□□ -2.18
CCDC88A-208ENST00000444458 ODF3BA8MYP8 253 aa1.4□□□□□ -2.19
CCDC88A-208ENST00000444458 UBE2G1P62253 170 aa1.4□□□□□ -2.19
CCDC88A-208ENST00000444458 MIR22HGQ0VDD5 57 aa1.4□□□□□ -2.19
CCDC88A-208ENST00000444458 EIF4EBP1Q13541 118 aaPredicted RBP1.4□□□□□ -2.19
CCDC88A-208ENST00000444458 FAM74A1Q5RGS3 127 aa1.4□□□□□ -2.19
CCDC88A-208ENST00000444458 LYPD1Q8N2G4 141 aa1.4□□□□□ -2.19
CCDC88A-208ENST00000444458 TMEM141Q96I45 108 aa1.4□□□□□ -2.19
CCDC88A-208ENST00000444458 NDUFA12Q9UI09 145 aa1.4□□□□□ -2.19
CCDC88A-208ENST00000444458 FOCADQ5VW36 1801 aa1.4□□□□□ -2.19
CCDC88A-208ENST00000444458 ARAP2Q8WZ64 1704 aa1.4□□□□□ -2.19
CCDC88A-208ENST00000444458 IBA57-AS1B1ANH7 110 aa1.4□□□□□ -2.19
CCDC88A-208ENST00000444458 PITX3O75364 302 aa1.4□□□□□ -2.19
CCDC88A-208ENST00000444458 KRTDAPP60985 99 aa1.4□□□□□ -2.19
CCDC88A-208ENST00000444458 PMCHL2Q9BQD1 86 aa1.4□□□□□ -2.19
CCDC88A-208ENST00000444458 Q9BRP9 147 aa1.4□□□□□ -2.19
CCDC88A-208ENST00000444458 PSORS1C2Q9UIG4 136 aa1.4□□□□□ -2.19
CCDC88A-208ENST00000444458 MYH13Q9UKX3 1938 aa1.4□□□□□ -2.19
CCDC88A-208ENST00000444458 TRAV12-1A0A0B4J245 112 aa1.39□□□□□ -2.19
CCDC88A-208ENST00000444458 IGKV2-24A0A0C4DH68 120 aa1.39□□□□□ -2.19
CCDC88A-208ENST00000444458 SSSCA1O60232 199 aa1.39□□□□□ -2.19
CCDC88A-208ENST00000444458 GNG11P61952 73 aa1.39□□□□□ -2.19
CCDC88A-208ENST00000444458 INSL4Q14641 139 aa1.39□□□□□ -2.19
CCDC88A-208ENST00000444458 SMAD5-AS1Q9Y6J3 95 aa1.39□□□□□ -2.19
CCDC88A-208ENST00000444458 SIPA1L3O60292 1781 aaPredicted RBP1.39□□□□□ -2.19
CCDC88A-208ENST00000444458 EDC4Q6P2E9 1401 aaKnown RBP1.39□□□□□ -2.19
CCDC88A-208ENST00000444458 IGKV3D-11A0A0A0MRZ8 115 aa1.39□□□□□ -2.19
CCDC88A-208ENST00000444458 A0A1W2PNM2 257 aa1.39□□□□□ -2.19
CCDC88A-208ENST00000444458 A6NN06 94 aa1.39□□□□□ -2.19
CCDC88A-208ENST00000444458 H3BRM9 83 aa1.39□□□□□ -2.19
CCDC88A-208ENST00000444458 CBLN1P23435 193 aa1.39□□□□□ -2.19
CCDC88A-208ENST00000444458 C5orf38Q86SI9 138 aa1.39□□□□□ -2.19
CCDC88A-208ENST00000444458 OR10AG1Q8NH19 301 aa1.39□□□□□ -2.19
CCDC88A-208ENST00000444458 MYH6P13533 1939 aa1.39□□□□□ -2.19
CCDC88A-208ENST00000444458 CACNA1DQ01668 2161 aa1.39□□□□□ -2.19
CCDC88A-208ENST00000444458 MYO9BQ13459 2157 aa1.39□□□□□ -2.19
CCDC88A-208ENST00000444458 ASXL3Q9C0F0 2248 aa1.39□□□□□ -2.19
CCDC88A-208ENST00000444458 COL6A3P12111 3177 aa1.39□□□□□ -2.19
CCDC88A-208ENST00000444458 AHNAKQ09666 5890 aaKnown RBP1.39□□□□□ -2.19
CCDC88A-208ENST00000444458 TMEM30CPA0ZSE6 113 aa1.39□□□□□ -2.19
CCDC88A-208ENST00000444458 TFF1P04155 84 aa1.39□□□□□ -2.19
Retrieved 100 of 20,778 RNA–protein pairs in 95.1 ms