RNA–Protein interactions for RNA: ENST00000443711.2

USP40-206, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-206ENST00000443711 A0A096LPF7 62 aa10.98□□□□□ -0.65
USP40-206ENST00000443711 GAGE12JA6NER3 117 aa10.98□□□□□ -0.65
USP40-206ENST00000443711 SRIP30626 198 aa10.98□□□□□ -0.65
USP40-206ENST00000443711 GAGE1Q13065 139 aa10.98□□□□□ -0.65
USP40-206ENST00000443711 GAGE4Q13068 117 aa10.98□□□□□ -0.65
USP40-206ENST00000443711 GAGE5Q13069 117 aa10.98□□□□□ -0.65
USP40-206ENST00000443711 GAGE13Q4V321 117 aa10.98□□□□□ -0.65
USP40-206ENST00000443711 NEXN-AS1Q8NBZ9 246 aa10.98□□□□□ -0.65
USP40-206ENST00000443711 ZNRF2Q8NHG8 242 aa10.98□□□□□ -0.65
USP40-206ENST00000443711 NIT2Q9NQR4 276 aa10.98□□□□□ -0.65
USP40-206ENST00000443711 Q9UF83 564 aa10.98□□□□□ -0.65
USP40-206ENST00000443711 TNFRSF18Q9Y5U5 241 aa10.98□□□□□ -0.65
USP40-206ENST00000443711 TRBV7-3A0A075B6L6 115 aa10.97□□□□□ -0.65
USP40-206ENST00000443711 HLA-DQA1P01909 254 aa10.97□□□□□ -0.65
USP40-206ENST00000443711 MT-ND6P03923 174 aa10.97□□□□□ -0.65
USP40-206ENST00000443711 CKS2P33552 79 aa10.97□□□□□ -0.65
USP40-206ENST00000443711 NEGR1Q7Z3B1 354 aa10.97□□□□□ -0.65
USP40-206ENST00000443711 SCO1O75880 301 aa10.96□□□□□ -0.65
USP40-206ENST00000443711 PPP1R17O96001 155 aa10.96□□□□□ -0.65
USP40-206ENST00000443711 PPBPP02775 128 aa10.96□□□□□ -0.65
USP40-206ENST00000443711 ATP6V0E2Q8NHE4 81 aa10.96□□□□□ -0.65
USP40-206ENST00000443711 TENM2Q9NT68 2774 aa10.95□□□□□ -0.66
USP40-206ENST00000443711 SMKR1H3BMG3 65 aa10.95□□□□□ -0.66
USP40-206ENST00000443711 APCSP02743 223 aa10.95□□□□□ -0.66
USP40-206ENST00000443711 LINC00694P0DN24 101 aa10.95□□□□□ -0.66
USP40-206ENST00000443711 UBE2D3P61077 147 aa10.95□□□□□ -0.66
USP40-206ENST00000443711 UBE2D2P62837 147 aa10.95□□□□□ -0.66
USP40-206ENST00000443711 OR10J3Q5JRS4 329 aa10.95□□□□□ -0.66
USP40-206ENST00000443711 RPL39LQ96EH5 51 aaKnown RBP10.95□□□□□ -0.66
USP40-206ENST00000443711 D6R8Y8 96 aa10.94□□□□□ -0.66
USP40-206ENST00000443711 GAS8-AS1O95177 125 aa10.94□□□□□ -0.66
USP40-206ENST00000443711 NCR2O95944 276 aa10.94□□□□□ -0.66
USP40-206ENST00000443711 ORMDL3Q8N138 153 aa10.94□□□□□ -0.66
USP40-206ENST00000443711 SREK1IP1Q8N9Q2 155 aaPredicted RBP10.94□□□□□ -0.66
USP40-206ENST00000443711 DYNC2H1Q8NCM8 4307 aaKnown RBP10.93□□□□□ -0.66
USP40-206ENST00000443711 TRBV6-5A0A0K0K1A5 114 aa10.93□□□□□ -0.66
USP40-206ENST00000443711 MRPL18Q9H0U6 180 aaKnown RBP10.93□□□□□ -0.66
USP40-206ENST00000443711 ST20Q9HBF5 79 aa10.93□□□□□ -0.66
USP40-206ENST00000443711 TRAPPC1Q9Y5R8 145 aa10.93□□□□□ -0.66
USP40-206ENST00000443711 CSMD3Q7Z407 3707 aa10.93□□□□□ -0.66
USP40-206ENST00000443711 RPS10P46783 165 aaKnown RBP10.92□□□□□ -0.66
USP40-206ENST00000443711 CCL18P55774 89 aa10.92□□□□□ -0.66
USP40-206ENST00000443711 FABP9Q0Z7S8 132 aa10.92□□□□□ -0.66
USP40-206ENST00000443711 LYPD5Q6UWN5 251 aa10.92□□□□□ -0.66
USP40-206ENST00000443711 DAZ4Q86SG3 579 aaKnown RBP10.92□□□□□ -0.66
USP40-206ENST00000443711 NRACQ8N912 160 aa10.92□□□□□ -0.66
USP40-206ENST00000443711 PRELID3AQ96N28 172 aa10.92□□□□□ -0.66
USP40-206ENST00000443711 DAZ3Q9NR90 486 aaKnown RBP10.92□□□□□ -0.66
USP40-206ENST00000443711 COLCA2A8K830 154 aa10.91□□□□□ -0.66
USP40-206ENST00000443711 PHOX2AO14813 284 aa10.91□□□□□ -0.66
USP40-206ENST00000443711 TNFRSF6BO95407 300 aa10.91□□□□□ -0.66
USP40-206ENST00000443711 TIRAPP58753 221 aa10.91□□□□□ -0.66
USP40-206ENST00000443711 ESRGQ1W209 222 aa10.91□□□□□ -0.66
USP40-206ENST00000443711 KIAA1644Q3SXP7 199 aa10.91□□□□□ -0.66
USP40-206ENST00000443711 GTSF1LQ9H1H1 148 aa10.91□□□□□ -0.66
USP40-206ENST00000443711 LAMTOR2Q9Y2Q5 125 aa10.91□□□□□ -0.66
USP40-206ENST00000443711 SDHAF1A6NFY7 115 aa10.9□□□□□ -0.66
USP40-206ENST00000443711 C20orf78Q9BR46 151 aa10.9□□□□□ -0.66
USP40-206ENST00000443711 IGHV3-38A0A0C4DH36 116 aa10.89□□□□□ -0.67
USP40-206ENST00000443711 NPYP01303 97 aa10.89□□□□□ -0.67
USP40-206ENST00000443711 POLR2KP53803 58 aaKnown RBP10.89□□□□□ -0.67
USP40-206ENST00000443711 SUMO2P61956 95 aaKnown RBP10.89□□□□□ -0.67
USP40-206ENST00000443711 TMEM97Q5BJF2 176 aa10.89□□□□□ -0.67
USP40-206ENST00000443711 UBE2DNLQ8IWF7 75 aa10.89□□□□□ -0.67
USP40-206ENST00000443711 VCYO14598 125 aa10.88□□□□□ -0.67
USP40-206ENST00000443711 RAB5AP20339 215 aa10.88□□□□□ -0.67
USP40-206ENST00000443711 PMCHP20382 165 aa10.88□□□□□ -0.67
USP40-206ENST00000443711 TMEM70Q9BUB7 260 aa10.88□□□□□ -0.67
USP40-206ENST00000443711 I3L3M4 83 aa10.87□□□□□ -0.67
USP40-206ENST00000443711 RPL32P62910 135 aaKnown RBP10.87□□□□□ -0.67
USP40-206ENST00000443711 COTL1Q14019 142 aa10.87□□□□□ -0.67
USP40-206ENST00000443711 LELP1Q5T871 98 aa10.87□□□□□ -0.67
USP40-206ENST00000443711 LGALS9CQ6DKI2 356 aa10.87□□□□□ -0.67
USP40-206ENST00000443711 ALKBH7Q9BT30 221 aaPredicted RBP10.87□□□□□ -0.67
USP40-206ENST00000443711 MRPS16Q9Y3D3 137 aaKnown RBP10.87□□□□□ -0.67
USP40-206ENST00000443711 LINC00588Q9Y4M8 146 aa10.87□□□□□ -0.67
USP40-206ENST00000443711 STARD9Q9P2P6 4700 aa10.87□□□□□ -0.67
USP40-206ENST00000443711 TRBV27A0A0K0K1C4 114 aa10.86□□□□□ -0.67
USP40-206ENST00000443711 MAP1LC3AQ9H492 121 aa10.86□□□□□ -0.67
USP40-206ENST00000443711 TRBV6-8A0A0A6YYG3 113 aa10.85□□□□□ -0.67
USP40-206ENST00000443711 TRAV8-6A0A0B4J262 113 aa10.85□□□□□ -0.67
USP40-206ENST00000443711 PRSS47A8MTI9 375 aa10.85□□□□□ -0.67
USP40-206ENST00000443711 SMIM2Q9BVW6 85 aa10.85□□□□□ -0.67
USP40-206ENST00000443711 KIR2DL4Q99706 377 aa10.84□□□□□ -0.67
USP40-206ENST00000443711 TRBV25-1A0A075B6N4 114 aa10.83□□□□□ -0.68
USP40-206ENST00000443711 IGHV1-24A0A0C4DH33 117 aa10.83□□□□□ -0.68
USP40-206ENST00000443711 LOC389332A0A1B0GUA5 103 aa10.83□□□□□ -0.68
USP40-206ENST00000443711 LY6G6CO95867 125 aa10.83□□□□□ -0.68
USP40-206ENST00000443711 TRGC2P03986 189 aa10.83□□□□□ -0.68
USP40-206ENST00000443711 NTM-AS1Q6ZSK4 140 aa10.83□□□□□ -0.68
USP40-206ENST00000443711 DEFB104AQ8WTQ1 72 aa10.83□□□□□ -0.68
USP40-206ENST00000443711 LINC00476Q8WZB0 136 aa10.83□□□□□ -0.68
USP40-206ENST00000443711 UPK3BQ9BT76 320 aa10.83□□□□□ -0.68
USP40-206ENST00000443711 TCAPO15273 167 aa10.82□□□□□ -0.68
USP40-206ENST00000443711 TSHBP01222 138 aa10.82□□□□□ -0.68
USP40-206ENST00000443711 FCER1GP30273 86 aa10.82□□□□□ -0.68
USP40-206ENST00000443711 AMTP48728 403 aa10.82□□□□□ -0.68
USP40-206ENST00000443711 IQCJQ1A5X6 159 aa10.82□□□□□ -0.68
USP40-206ENST00000443711 Q8N8P6 123 aa10.82□□□□□ -0.68
USP40-206ENST00000443711 NXT2Q9NPJ8 142 aaKnown RBP10.81□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 54.7 ms