RNA–Protein interactions for RNA: ENST00000433762.1

COL6A3-207, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best)

Gene COL6A3, Length 2,379 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-207ENST00000433762 SPINK13Q1W4C9 94 aa10.08□□□□□ -0.8
COL6A3-207ENST00000433762 Q8N2B8 174 aa10.08□□□□□ -0.8
COL6A3-207ENST00000433762 ASH1LQ9NR48 2969 aaKnown RBP10.08□□□□□ -0.8
COL6A3-207ENST00000433762 TRBV20-1A0A075B6N2 111 aa10.07□□□□□ -0.8
COL6A3-207ENST00000433762 P0DMU3 169 aa10.07□□□□□ -0.8
COL6A3-207ENST00000433762 FAM231AP0DMU4 169 aa10.07□□□□□ -0.8
COL6A3-207ENST00000433762 FAM231CP0DMU5 169 aa10.07□□□□□ -0.8
COL6A3-207ENST00000433762 TMEM170BQ5T4T1 132 aa10.07□□□□□ -0.8
COL6A3-207ENST00000433762 NDUFA11Q86Y39 141 aa10.07□□□□□ -0.8
COL6A3-207ENST00000433762 TRAV12-2A0A075B6T6 113 aa10.07□□□□□ -0.8
COL6A3-207ENST00000433762 TSPAN13O95857 204 aa10.07□□□□□ -0.8
COL6A3-207ENST00000433762 LGALS3P17931 250 aaKnown RBP10.07□□□□□ -0.8
COL6A3-207ENST00000433762 KLHL30-AS1Q8NEE0 82 aa10.07□□□□□ -0.8
COL6A3-207ENST00000433762 SPATA25Q9BR10 227 aa10.07□□□□□ -0.8
COL6A3-207ENST00000433762 A8MWV9 139 aa10.06□□□□□ -0.8
COL6A3-207ENST00000433762 LRRK2Q5S007 2527 aa10.06□□□□□ -0.8
COL6A3-207ENST00000433762 CFAP126Q5VTH2 177 aa10.06□□□□□ -0.8
COL6A3-207ENST00000433762 C10orf99Q6UWK7 81 aa10.06□□□□□ -0.8
COL6A3-207ENST00000433762 TSPEAR-AS2P59090 65 aa10.05□□□□□ -0.8
COL6A3-207ENST00000433762 SELENOKQ9Y6D0 94 aa10.05□□□□□ -0.8
COL6A3-207ENST00000433762 TGFAP01135 160 aa10.04□□□□□ -0.8
COL6A3-207ENST00000433762 TCTEX1D4Q5JR98 221 aa10.04□□□□□ -0.8
COL6A3-207ENST00000433762 C10orf126Q8N4M7 172 aa10.04□□□□□ -0.8
COL6A3-207ENST00000433762 WFDC12Q8WWY7 111 aa10.04□□□□□ -0.8
COL6A3-207ENST00000433762 CLUHP3Q96NS8 147 aa10.04□□□□□ -0.8
COL6A3-207ENST00000433762 COL12A1Q99715 3063 aa10.04□□□□□ -0.8
COL6A3-207ENST00000433762 IGLV4-3A0A075B6K6 122 aa10.04□□□□□ -0.8
COL6A3-207ENST00000433762 RHODO00212 210 aa10.04□□□□□ -0.8
COL6A3-207ENST00000433762 ZNF22P17026 224 aaPredicted RBP10.04□□□□□ -0.8
COL6A3-207ENST00000433762 VCX2Q9H322 139 aa10.04□□□□□ -0.8
COL6A3-207ENST00000433762 PEMTQ9UBM1 199 aa10.04□□□□□ -0.8
COL6A3-207ENST00000433762 M0QXV9 152 aa10.03□□□□□ -0.8
COL6A3-207ENST00000433762 M0R2P5 195 aa10.03□□□□□ -0.8
COL6A3-207ENST00000433762 IGKV3-20P01619 116 aa10.03□□□□□ -0.8
COL6A3-207ENST00000433762 ETDBQ3ZM63 59 aa10.03□□□□□ -0.8
COL6A3-207ENST00000433762 DNAJC30Q96LL9 226 aa10.03□□□□□ -0.8
COL6A3-207ENST00000433762 C1QTNF4Q9BXJ3 329 aa10.03□□□□□ -0.8
COL6A3-207ENST00000433762 A0A0B4J2C4 111 aa10.02□□□□□ -0.8
COL6A3-207ENST00000433762 TMEM238C9JI98 176 aa10.02□□□□□ -0.8
COL6A3-207ENST00000433762 H3BMM0 161 aa10.02□□□□□ -0.8
COL6A3-207ENST00000433762 EMP1P54849 157 aa10.02□□□□□ -0.8
COL6A3-207ENST00000433762 MRPS36P82909 103 aaKnown RBP10.02□□□□□ -0.8
COL6A3-207ENST00000433762 ZNF415Q09FC8 603 aa10.02□□□□□ -0.8
COL6A3-207ENST00000433762 SBSPONQ8IVN8 264 aa10.02□□□□□ -0.8
COL6A3-207ENST00000433762 SIGMAR1Q99720 223 aa10.02□□□□□ -0.8
COL6A3-207ENST00000433762 SPANXA1Q9NS26 97 aa10.02□□□□□ -0.8
COL6A3-207ENST00000433762 PRO1854Q9UHT4 67 aa10.02□□□□□ -0.8
COL6A3-207ENST00000433762 UTP20O75691 2785 aaKnown RBP10.02□□□□□ -0.81
COL6A3-207ENST00000433762 GAGE12HA6NDE8 117 aa10.02□□□□□ -0.81
COL6A3-207ENST00000433762 CFC1BP0CG36 223 aa10.02□□□□□ -0.81
COL6A3-207ENST00000433762 CFC1P0CG37 223 aa10.02□□□□□ -0.81
COL6A3-207ENST00000433762 PRRC2AP48634 2157 aaKnown RBP10.01□□□□□ -0.81
COL6A3-207ENST00000433762 IGHV4-31P0DP07 118 aa10.01□□□□□ -0.81
COL6A3-207ENST00000433762 LRRC75A-AS1Q8N1F1 130 aa10.01□□□□□ -0.81
COL6A3-207ENST00000433762 DUX5Q96PT3 197 aa10.01□□□□□ -0.81
COL6A3-207ENST00000433762 SPXQ9BT56 116 aa10.01□□□□□ -0.81
COL6A3-207ENST00000433762 TRAV16A0A0A6YYK6 109 aaPredicted RBP10.01□□□□□ -0.81
COL6A3-207ENST00000433762 C4orf3Q8WVX3 66 aa10.01□□□□□ -0.81
COL6A3-207ENST00000433762 BEX4Q9NWD9 120 aaPredicted RBP10.01□□□□□ -0.81
COL6A3-207ENST00000433762 RBMY1A1P0DJD3 496 aaKnown RBP10□□□□□ -0.81
COL6A3-207ENST00000433762 RBMY1CP0DJD4 496 aa10□□□□□ -0.81
COL6A3-207ENST00000433762 RBMY1FQ15415 496 aaKnown RBP10□□□□□ -0.81
COL6A3-207ENST00000433762 DOPEY2Q9Y3R5 2298 aa10□□□□□ -0.81
COL6A3-207ENST00000433762 APOMO95445 188 aa10□□□□□ -0.81
COL6A3-207ENST00000433762 SH2D6Q7Z4S9 175 aa10□□□□□ -0.81
COL6A3-207ENST00000433762 TSSC4Q9Y5U2 329 aaPredicted RBP10□□□□□ -0.81
COL6A3-207ENST00000433762 DEFB131AP59861 70 aa9.99□□□□□ -0.81
COL6A3-207ENST00000433762 FOXI1Q12951 378 aa9.99□□□□□ -0.81
COL6A3-207ENST00000433762 BEAN1Q3B7T3 259 aa9.99□□□□□ -0.81
COL6A3-207ENST00000433762 TMEM86BQ8N661 226 aa9.99□□□□□ -0.81
COL6A3-207ENST00000433762 TNFRSF18Q9Y5U5 241 aa9.99□□□□□ -0.81
COL6A3-207ENST00000433762 CR1P17927 2039 aa9.99□□□□□ -0.81
COL6A3-207ENST00000433762 CSPG4Q6UVK1 2322 aa9.99□□□□□ -0.81
COL6A3-207ENST00000433762 LOC107984156A0A0G2JMH3 177 aa9.99□□□□□ -0.81
COL6A3-207ENST00000433762 ARL17AQ8IVW1 177 aa9.99□□□□□ -0.81
COL6A3-207ENST00000433762 RNF183Q96D59 192 aa9.99□□□□□ -0.81
COL6A3-207ENST00000433762 TINCRA0A1B0GVN0 87 aa9.98□□□□□ -0.81
COL6A3-207ENST00000433762 CD28P10747 220 aa9.98□□□□□ -0.81
COL6A3-207ENST00000433762 SMCPP49901 116 aaPredicted RBP9.98□□□□□ -0.81
COL6A3-207ENST00000433762 LINC01600Q96MT4 127 aa9.98□□□□□ -0.81
COL6A3-207ENST00000433762 USP9YO00507 2555 aaPredicted RBP9.98□□□□□ -0.81
COL6A3-207ENST00000433762 NACAE9PAV3 2078 aa9.98□□□□□ -0.81
COL6A3-207ENST00000433762 A0A0J9YXV3 536 aa9.97□□□□□ -0.81
COL6A3-207ENST00000433762 PSMB2P49721 201 aa9.97□□□□□ -0.81
COL6A3-207ENST00000433762 TEN1Q86WV5 123 aa9.97□□□□□ -0.81
COL6A3-207ENST00000433762 TEX29Q8N6K0 151 aa9.97□□□□□ -0.81
COL6A3-207ENST00000433762 NRGNQ92686 78 aa9.97□□□□□ -0.81
COL6A3-207ENST00000433762 DUX3Q96PT4 197 aa9.97□□□□□ -0.81
COL6A3-207ENST00000433762 TRAV25A0A0B4J276 109 aa9.97□□□□□ -0.81
COL6A3-207ENST00000433762 KNCNA6PVL3 124 aa9.97□□□□□ -0.81
COL6A3-207ENST00000433762 IGHV3-53P01767 116 aa9.97□□□□□ -0.81
COL6A3-207ENST00000433762 TMEM263Q8WUH6 116 aaKnown RBP9.97□□□□□ -0.81
COL6A3-207ENST00000433762 PPDPFLQ8WWR9 84 aa9.97□□□□□ -0.81
COL6A3-207ENST00000433762 FAM104AQ969W3 186 aa9.97□□□□□ -0.81
COL6A3-207ENST00000433762 RAX2Q96IS3 184 aa9.97□□□□□ -0.81
COL6A3-207ENST00000433762 OPRPNQ99935 248 aaPredicted RBP9.97□□□□□ -0.81
COL6A3-207ENST00000433762 TIMM21Q9BVV7 248 aa9.97□□□□□ -0.81
COL6A3-207ENST00000433762 TENM4Q6N022 2769 aa9.96□□□□□ -0.81
COL6A3-207ENST00000433762 RBMY1BA6NDE4 496 aaKnown RBP9.96□□□□□ -0.81
COL6A3-207ENST00000433762 RBMY1EA6NEQ0 496 aaKnown RBP9.96□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms